Wall clock time and date at job start Tue Mar 31 2020 20:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35805 * 117.00139 * 2 1 4 4 C 1.38833 * 119.92500 * 359.97438 * 3 2 1 5 5 C 1.37790 * 120.15217 * 179.97438 * 4 3 2 6 6 C 1.39705 * 120.00121 * 0.02562 * 5 4 3 7 7 C 1.47604 * 120.07261 * 180.02562 * 6 5 4 8 8 O 1.21584 * 120.00219 * 180.02562 * 7 6 5 9 9 N 1.34778 * 119.99952 * 0.02562 * 7 6 5 10 10 C 1.46497 * 120.00122 * 180.02562 * 9 7 6 11 11 C 1.53000 * 110.78328 * 56.75907 * 10 9 7 12 12 C 1.55158 * 110.72102 * 180.02562 * 10 9 7 13 13 C 1.54909 * 101.61642 * 82.87626 * 12 10 9 14 14 N 1.47423 * 104.83351 * 36.99324 * 13 12 10 15 15 C 1.36936 * 125.64594 * 155.90840 * 14 13 12 16 16 H 1.08007 * 120.00033 * 179.97438 * 15 14 13 17 17 C 1.38813 * 120.00281 * 359.97114 * 15 14 13 18 18 N 1.31616 * 120.00050 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99983 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47406 * 59.99989 * 19 17 15 21 21 H 1.48499 * 109.47231 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47250 * 299.99992 * 19 17 15 23 23 C 1.47016 * 108.70440 * 335.86643 * 14 13 12 24 24 C 1.39739 * 119.85600 * 0.28211 * 6 5 4 25 25 C 1.38139 * 119.84629 * 359.42301 * 24 6 5 26 26 O 1.36006 * 119.99796 * 180.29357 * 25 24 6 27 27 C 1.42899 * 116.99976 * 0.28342 * 26 25 24 28 28 H 1.09001 * 109.47209 * 60.00062 * 1 2 3 29 29 H 1.08998 * 109.46891 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46886 * 299.99887 * 1 2 3 31 31 H 1.08004 * 119.92538 * 359.97438 * 4 3 2 32 32 H 1.07996 * 120.00058 * 180.02562 * 5 4 3 33 33 H 0.96999 * 119.99903 * 359.97438 * 9 7 6 34 34 H 1.09001 * 109.47041 * 183.24556 * 11 10 9 35 35 H 1.09005 * 109.47043 * 303.24051 * 11 10 9 36 36 H 1.08994 * 109.46599 * 63.24007 * 11 10 9 37 37 H 1.09002 * 111.00366 * 324.78145 * 12 10 9 38 38 H 1.09002 * 111.00429 * 200.97207 * 12 10 9 39 39 H 1.09000 * 110.36449 * 155.82966 * 13 12 10 40 40 H 1.09002 * 110.36898 * 278.14897 * 13 12 10 41 41 H 0.96996 * 120.00056 * 180.02562 * 18 17 15 42 42 H 1.09000 * 109.88531 * 120.47268 * 23 14 13 43 43 H 1.08996 * 109.88671 * 241.49081 * 23 14 13 44 44 H 1.07994 * 120.07031 * 179.71691 * 24 6 5 45 45 H 1.09000 * 109.47077 * 299.99678 * 27 26 25 46 46 H 1.08999 * 109.47212 * 59.99652 * 27 26 25 47 47 H 1.09008 * 109.47115 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2100 0.0000 4 6 1.2879 2.3734 -0.0005 5 6 1.9086 3.6036 0.0000 6 6 3.3035 3.6822 0.0005 7 6 3.9700 4.9992 0.0017 8 8 5.1840 5.0661 0.0017 9 7 3.2329 6.1275 0.0027 10 6 3.8945 7.4346 0.0033 11 6 4.8387 7.5657 -1.1934 12 6 2.8475 8.5798 0.0051 13 6 2.4994 8.6817 1.5111 14 7 3.7742 8.4384 2.2105 15 6 4.0855 8.8654 3.4738 16 1 5.0510 8.6343 3.8993 17 6 3.1605 9.5953 4.2075 18 7 1.9838 9.8766 3.6891 19 14 3.5855 10.1783 5.9305 20 1 4.7769 11.0630 5.8739 21 1 2.4366 10.9301 6.4962 22 1 3.8807 9.0049 6.7914 23 6 4.6554 7.6606 1.3274 24 6 4.0663 2.5114 -0.0054 25 6 3.4376 1.2813 0.0002 26 8 4.1771 0.1398 0.0005 27 6 5.5984 0.2875 0.0010 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2095 2.3141 -0.0014 32 1 1.3169 4.5070 0.0000 33 1 2.2644 6.0741 0.0023 34 1 5.3616 8.5207 -1.1407 35 1 5.5645 6.7526 -1.1744 36 1 4.2628 7.5172 -2.1175 37 1 1.9699 8.3077 -0.5812 38 1 3.2849 9.5096 -0.3587 39 1 2.1215 9.6766 1.7466 40 1 1.7663 7.9224 1.7834 41 1 1.3375 10.3869 4.2017 42 1 5.5733 8.2166 1.1363 43 1 4.8920 6.7025 1.7902 44 1 5.1447 2.5682 -0.0097 45 1 5.9070 0.8362 -0.8889 46 1 5.9063 0.8362 0.8911 47 1 6.0660 -0.6971 0.0016 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046812500.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:47 Heat of formation + Delta-G solvation = -44.704989 kcal Electronic energy + Delta-G solvation = -29326.997631 eV Core-core repulsion = 25284.031254 eV Total energy + Delta-G solvation = -4042.966377 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.90372 -39.79901 -38.68256 -37.56019 -36.46559 -34.03008 -32.09433 -30.71130 -30.55865 -29.72481 -28.66783 -27.53001 -27.38683 -25.66221 -24.00424 -23.32696 -22.29106 -20.84721 -20.30842 -19.04747 -18.91735 -17.71966 -16.97263 -16.83857 -16.31472 -16.28794 -15.49232 -15.46209 -15.00194 -14.70878 -14.65666 -14.63569 -14.23882 -13.70853 -13.35577 -13.15969 -12.91106 -12.82984 -12.68456 -12.36327 -12.25241 -11.98173 -11.72200 -11.58309 -11.56837 -11.41379 -11.35585 -11.14089 -10.93116 -10.83200 -10.41003 -10.32765 -10.10980 -9.96451 -9.65242 -9.30415 -8.98001 -8.66718 -8.61335 -8.04101 -6.80254 -5.64114 -3.04331 0.77470 1.13475 2.93056 2.96618 3.05716 3.40037 3.42589 3.46171 3.47767 3.81081 4.50541 4.51623 4.67760 4.73512 4.87679 4.89151 4.93025 5.04670 5.07612 5.12245 5.19407 5.21827 5.36597 5.40417 5.44160 5.50461 5.58449 5.74097 5.82017 5.96252 6.07491 6.13872 6.19187 6.23433 6.33301 6.38091 6.46550 6.53682 6.72348 6.78252 6.84123 7.14439 7.31228 7.45036 7.64155 7.80078 7.87236 8.36197 8.50541 9.24374 9.85079 10.49977 11.40254 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013351 B = 0.002934 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.681404 B = 9540.072320 C = 9982.903574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.304 6.304 3 C 0.120 3.880 4 C -0.181 4.181 5 C -0.078 4.078 6 C -0.126 4.126 7 C 0.562 3.438 8 O -0.537 6.537 9 N -0.701 5.701 10 C 0.159 3.841 11 C -0.152 4.152 12 C -0.147 4.147 13 C 0.153 3.847 14 N -0.604 5.604 15 C -0.218 4.218 16 H 0.076 0.924 17 C -0.012 4.012 18 N -0.925 5.925 19 Si 0.914 3.086 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.286 1.286 23 C 0.138 3.862 24 C -0.114 4.114 25 C 0.089 3.911 26 O -0.307 6.307 27 C 0.024 3.976 28 H 0.057 0.943 29 H 0.100 0.900 30 H 0.058 0.942 31 H 0.141 0.859 32 H 0.133 0.867 33 H 0.397 0.603 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.049 0.951 37 H 0.062 0.938 38 H 0.077 0.923 39 H 0.108 0.892 40 H 0.010 0.990 41 H 0.252 0.748 42 H 0.030 0.970 43 H 0.031 0.969 44 H 0.149 0.851 45 H 0.057 0.943 46 H 0.058 0.942 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.737 -17.201 -12.282 21.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.217 6.217 3 C 0.074 3.926 4 C -0.200 4.200 5 C -0.097 4.097 6 C -0.129 4.129 7 C 0.349 3.651 8 O -0.416 6.416 9 N -0.352 5.352 10 C 0.074 3.926 11 C -0.210 4.210 12 C -0.186 4.186 13 C 0.028 3.972 14 N -0.330 5.330 15 C -0.346 4.346 16 H 0.094 0.906 17 C -0.207 4.207 18 N -0.574 5.574 19 Si 0.745 3.255 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.213 1.213 23 C 0.011 3.989 24 C -0.134 4.134 25 C 0.043 3.957 26 O -0.221 6.221 27 C -0.071 4.071 28 H 0.075 0.925 29 H 0.119 0.881 30 H 0.076 0.924 31 H 0.159 0.841 32 H 0.151 0.849 33 H 0.232 0.768 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.096 0.904 39 H 0.126 0.874 40 H 0.028 0.972 41 H 0.062 0.938 42 H 0.048 0.952 43 H 0.048 0.952 44 H 0.167 0.833 45 H 0.075 0.925 46 H 0.077 0.923 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.940 -17.396 -12.093 21.275 hybrid contribution -0.430 0.517 1.015 1.218 sum -2.370 -16.878 -11.078 20.328 Atomic orbital electron populations 1.23120 0.78319 1.04113 1.01537 1.86136 1.21246 1.25918 1.88438 1.18457 0.89124 0.85262 0.99757 1.20985 1.00208 0.91106 1.07669 1.21060 0.93334 0.97638 0.97676 1.19753 0.93390 0.93484 1.06303 1.17990 0.86964 0.83672 0.76488 1.90714 1.13420 1.87331 1.50099 1.45894 1.09843 1.05333 1.74099 1.21376 0.93735 0.81601 0.95922 1.22071 0.99773 1.03089 0.96113 1.23366 0.97009 0.96669 1.01535 1.21939 0.87719 1.03127 0.84439 1.44490 1.12730 1.61972 1.13784 1.19053 0.99426 1.27054 0.89099 0.90611 1.24751 0.96141 1.01053 0.98794 1.69759 1.06424 1.44721 1.36533 0.86149 0.77042 0.78412 0.83900 1.21166 1.21593 1.21290 1.21610 0.93111 0.95178 0.89009 1.21152 1.01233 0.89597 1.01395 1.18061 0.88227 0.86066 1.03308 1.86155 1.18936 1.27748 1.89234 1.23116 0.78329 1.03887 1.01796 0.92489 0.88130 0.92385 0.84116 0.84899 0.76796 0.91752 0.90464 0.93194 0.91912 0.90445 0.87412 0.97223 0.93774 0.95166 0.95150 0.83308 0.92458 0.92336 0.88135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 101.05 0.99 1.16 16 2 O -0.30 -3.48 10.27 -33.79 -0.35 -3.83 16 3 C 0.12 1.47 6.71 -38.93 -0.26 1.21 16 4 C -0.18 -1.92 9.01 -39.52 -0.36 -2.28 16 5 C -0.08 -0.92 9.53 -39.20 -0.37 -1.29 16 6 C -0.13 -1.79 5.87 -104.97 -0.62 -2.41 16 7 C 0.56 9.41 6.99 -12.44 -0.09 9.32 16 8 O -0.54 -10.39 13.32 5.29 0.07 -10.32 16 9 N -0.70 -11.31 5.10 -46.89 -0.24 -11.55 16 10 C 0.16 2.87 0.81 -129.95 -0.11 2.77 16 11 C -0.15 -2.43 8.44 37.16 0.31 -2.11 16 12 C -0.15 -2.65 6.07 -24.58 -0.15 -2.80 16 13 C 0.15 3.60 5.87 -2.53 -0.01 3.58 16 14 N -0.60 -15.69 3.39 -170.04 -0.58 -16.27 16 15 C -0.22 -6.20 10.27 -15.06 -0.15 -6.36 16 16 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 17 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 18 N -0.93 -26.75 10.09 55.49 0.56 -26.19 16 19 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 C 0.14 3.10 6.19 -3.04 -0.02 3.08 16 24 C -0.11 -1.55 8.58 -39.06 -0.33 -1.89 16 25 C 0.09 1.17 6.69 -39.19 -0.26 0.91 16 26 O -0.31 -3.86 10.28 -34.42 -0.35 -4.21 16 27 C 0.02 0.21 9.81 101.05 0.99 1.20 16 28 H 0.06 0.31 7.65 -51.93 -0.40 -0.08 16 29 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.35 7.65 -51.93 -0.40 -0.05 16 31 H 0.14 1.08 6.27 -52.48 -0.33 0.75 16 32 H 0.13 1.31 6.39 -52.49 -0.34 0.98 16 33 H 0.40 5.50 6.51 -40.82 -0.27 5.24 16 34 H 0.06 0.99 8.06 -51.93 -0.42 0.57 16 35 H 0.08 1.33 5.97 -51.93 -0.31 1.02 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.95 8.07 -51.93 -0.42 0.53 16 38 H 0.08 1.37 8.05 -51.93 -0.42 0.96 16 39 H 0.11 2.87 5.88 -51.93 -0.31 2.56 16 40 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 42 H 0.03 0.69 7.76 -51.93 -0.40 0.29 16 43 H 0.03 0.75 6.91 -51.93 -0.36 0.39 16 44 H 0.15 1.96 5.87 -52.49 -0.31 1.65 16 45 H 0.06 0.47 7.65 -51.93 -0.40 0.07 16 46 H 0.06 0.51 7.67 -51.93 -0.40 0.12 16 47 H 0.10 0.65 8.14 -51.92 -0.42 0.23 16 LS Contribution 374.51 15.07 5.64 5.64 Total: -1.00 -34.14 374.51 -7.50 -41.64 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -6.70 Total: 4.11 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: -0.53 Total: 3.65 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: -0.26 Total: -54.01 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: -0.63 Total: -18.35 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.14 -7.50 -41.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046812500.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.062 kcal (2) G-P(sol) polarization free energy of solvation -34.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds