Wall clock time and date at job start Tue Mar 31 2020 20:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35805 * 117.00139 * 2 1 4 4 C 1.38833 * 119.92500 * 359.97438 * 3 2 1 5 5 C 1.37790 * 120.15217 * 179.97438 * 4 3 2 6 6 C 1.39705 * 120.00121 * 0.02562 * 5 4 3 7 7 C 1.47604 * 120.07261 * 180.02562 * 6 5 4 8 8 O 1.21584 * 120.00219 * 180.02562 * 7 6 5 9 9 N 1.34778 * 119.99952 * 0.02562 * 7 6 5 10 10 C 1.46497 * 120.00122 * 180.02562 * 9 7 6 11 11 C 1.53000 * 110.78328 * 56.75907 * 10 9 7 12 12 C 1.55158 * 110.72102 * 180.02562 * 10 9 7 13 13 C 1.54909 * 101.61642 * 82.87626 * 12 10 9 14 14 N 1.47423 * 104.83351 * 36.99324 * 13 12 10 15 15 C 1.36936 * 125.64594 * 155.90840 * 14 13 12 16 16 H 1.08007 * 120.00033 * 179.97438 * 15 14 13 17 17 C 1.38813 * 120.00281 * 359.97114 * 15 14 13 18 18 N 1.31616 * 120.00050 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99983 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47406 * 59.99989 * 19 17 15 21 21 H 1.48499 * 109.47231 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47250 * 299.99992 * 19 17 15 23 23 C 1.47016 * 108.70440 * 335.86643 * 14 13 12 24 24 C 1.39739 * 119.85600 * 0.28211 * 6 5 4 25 25 C 1.38139 * 119.84629 * 359.42301 * 24 6 5 26 26 O 1.36006 * 119.99796 * 180.29357 * 25 24 6 27 27 C 1.42899 * 116.99976 * 0.28342 * 26 25 24 28 28 H 1.09001 * 109.47209 * 60.00062 * 1 2 3 29 29 H 1.08998 * 109.46891 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46886 * 299.99887 * 1 2 3 31 31 H 1.08004 * 119.92538 * 359.97438 * 4 3 2 32 32 H 1.07996 * 120.00058 * 180.02562 * 5 4 3 33 33 H 0.96999 * 119.99903 * 359.97438 * 9 7 6 34 34 H 1.09001 * 109.47041 * 183.24556 * 11 10 9 35 35 H 1.09005 * 109.47043 * 303.24051 * 11 10 9 36 36 H 1.08994 * 109.46599 * 63.24007 * 11 10 9 37 37 H 1.09002 * 111.00366 * 324.78145 * 12 10 9 38 38 H 1.09002 * 111.00429 * 200.97207 * 12 10 9 39 39 H 1.09000 * 110.36449 * 155.82966 * 13 12 10 40 40 H 1.09002 * 110.36898 * 278.14897 * 13 12 10 41 41 H 0.96996 * 120.00056 * 180.02562 * 18 17 15 42 42 H 1.09000 * 109.88531 * 120.47268 * 23 14 13 43 43 H 1.08996 * 109.88671 * 241.49081 * 23 14 13 44 44 H 1.07994 * 120.07031 * 179.71691 * 24 6 5 45 45 H 1.09000 * 109.47077 * 299.99678 * 27 26 25 46 46 H 1.08999 * 109.47212 * 59.99652 * 27 26 25 47 47 H 1.09008 * 109.47115 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2100 0.0000 4 6 1.2879 2.3734 -0.0005 5 6 1.9086 3.6036 0.0000 6 6 3.3035 3.6822 0.0005 7 6 3.9700 4.9992 0.0017 8 8 5.1840 5.0661 0.0017 9 7 3.2329 6.1275 0.0027 10 6 3.8945 7.4346 0.0033 11 6 4.8387 7.5657 -1.1934 12 6 2.8475 8.5798 0.0051 13 6 2.4994 8.6817 1.5111 14 7 3.7742 8.4384 2.2105 15 6 4.0855 8.8654 3.4738 16 1 5.0510 8.6343 3.8993 17 6 3.1605 9.5953 4.2075 18 7 1.9838 9.8766 3.6891 19 14 3.5855 10.1783 5.9305 20 1 4.7769 11.0630 5.8739 21 1 2.4366 10.9301 6.4962 22 1 3.8807 9.0049 6.7914 23 6 4.6554 7.6606 1.3274 24 6 4.0663 2.5114 -0.0054 25 6 3.4376 1.2813 0.0002 26 8 4.1771 0.1398 0.0005 27 6 5.5984 0.2875 0.0010 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2095 2.3141 -0.0014 32 1 1.3169 4.5070 0.0000 33 1 2.2644 6.0741 0.0023 34 1 5.3616 8.5207 -1.1407 35 1 5.5645 6.7526 -1.1744 36 1 4.2628 7.5172 -2.1175 37 1 1.9699 8.3077 -0.5812 38 1 3.2849 9.5096 -0.3587 39 1 2.1215 9.6766 1.7466 40 1 1.7663 7.9224 1.7834 41 1 1.3375 10.3869 4.2017 42 1 5.5733 8.2166 1.1363 43 1 4.8920 6.7025 1.7902 44 1 5.1447 2.5682 -0.0097 45 1 5.9070 0.8362 -0.8889 46 1 5.9063 0.8362 0.8911 47 1 6.0660 -0.6971 0.0016 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046812500.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:46 Heat of formation + Delta-G solvation = -67.590904 kcal Electronic energy + Delta-G solvation = -29327.990039 eV Core-core repulsion = 25284.031254 eV Total energy + Delta-G solvation = -4043.958785 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.89854 -41.06091 -39.51946 -39.01942 -37.53861 -35.75647 -33.75881 -32.11834 -31.51092 -31.00642 -30.31472 -28.26415 -28.12178 -27.54158 -25.52683 -24.61528 -23.19717 -22.30413 -21.88412 -20.49122 -19.90344 -18.98455 -18.56865 -17.80771 -17.46041 -17.12638 -17.03034 -16.63772 -16.20140 -15.99269 -15.83663 -15.59025 -15.54762 -15.47172 -14.76217 -14.34975 -14.11349 -14.04694 -13.81124 -13.65338 -13.48470 -13.31291 -13.12037 -13.04169 -12.83319 -12.75760 -12.40841 -12.14786 -12.13241 -12.10549 -12.04631 -11.99259 -11.96722 -11.68219 -11.55602 -10.75233 -10.71318 -10.08608 -9.87957 -8.97004 -8.88216 -7.78553 -5.21906 -0.23828 0.21950 1.45251 1.47917 1.54455 1.79569 2.09417 2.24989 2.27159 2.48597 2.74193 3.30511 3.53783 3.68768 3.71385 3.76516 3.89568 4.02298 4.03299 4.15792 4.18378 4.34089 4.34265 4.42394 4.44473 4.57044 4.63910 4.67279 4.69321 4.77363 4.79357 4.85349 4.89235 4.91111 5.02581 5.09032 5.09738 5.19076 5.36603 5.42346 5.44384 5.61507 5.68407 5.80989 5.99187 6.31563 6.47090 6.59211 7.11426 7.23921 7.77276 8.40844 9.22552 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013351 B = 0.002934 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.681404 B = 9540.072320 C = 9982.903574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.323 6.323 3 C 0.119 3.881 4 C -0.173 4.173 5 C -0.072 4.072 6 C -0.149 4.149 7 C 0.560 3.440 8 O -0.571 6.571 9 N -0.696 5.696 10 C 0.170 3.830 11 C -0.143 4.143 12 C -0.127 4.127 13 C 0.155 3.845 14 N -0.623 5.623 15 C -0.245 4.245 16 H 0.068 0.932 17 C -0.059 4.059 18 N -0.942 5.942 19 Si 0.977 3.023 20 H -0.278 1.278 21 H -0.287 1.287 22 H -0.284 1.284 23 C 0.137 3.863 24 C -0.121 4.121 25 C 0.073 3.927 26 O -0.322 6.322 27 C 0.018 3.982 28 H 0.073 0.927 29 H 0.119 0.881 30 H 0.068 0.932 31 H 0.176 0.824 32 H 0.154 0.846 33 H 0.409 0.591 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.078 0.922 37 H 0.103 0.897 38 H 0.084 0.916 39 H 0.077 0.923 40 H -0.005 1.005 41 H 0.249 0.751 42 H 0.022 0.978 43 H 0.004 0.996 44 H 0.143 0.857 45 H 0.061 0.939 46 H 0.054 0.946 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.403 -17.872 -13.324 22.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.236 6.236 3 C 0.072 3.928 4 C -0.191 4.191 5 C -0.091 4.091 6 C -0.152 4.152 7 C 0.349 3.651 8 O -0.452 6.452 9 N -0.348 5.348 10 C 0.083 3.917 11 C -0.202 4.202 12 C -0.166 4.166 13 C 0.030 3.970 14 N -0.349 5.349 15 C -0.374 4.374 16 H 0.086 0.914 17 C -0.252 4.252 18 N -0.592 5.592 19 Si 0.805 3.195 20 H -0.204 1.204 21 H -0.213 1.213 22 H -0.210 1.210 23 C 0.011 3.989 24 C -0.141 4.141 25 C 0.028 3.972 26 O -0.236 6.236 27 C -0.076 4.076 28 H 0.092 0.908 29 H 0.137 0.863 30 H 0.086 0.914 31 H 0.193 0.807 32 H 0.172 0.828 33 H 0.247 0.753 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.097 0.903 37 H 0.121 0.879 38 H 0.103 0.897 39 H 0.095 0.905 40 H 0.013 0.987 41 H 0.059 0.941 42 H 0.040 0.960 43 H 0.022 0.978 44 H 0.160 0.840 45 H 0.080 0.920 46 H 0.073 0.927 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.627 -18.084 -13.156 22.656 hybrid contribution 0.059 0.608 1.373 1.503 sum -3.569 -17.476 -11.783 21.377 Atomic orbital electron populations 1.23475 0.75896 1.05942 1.02821 1.86122 1.23792 1.25624 1.88077 1.18706 0.89063 0.86239 0.98777 1.21317 1.01775 0.89897 1.06141 1.21300 0.92319 0.99059 0.96407 1.19633 0.94573 0.92077 1.08961 1.18394 0.86667 0.84580 0.75500 1.90691 1.14968 1.87886 1.51653 1.45783 1.10464 1.04553 1.73953 1.21198 0.93735 0.82572 0.94155 1.21993 0.99286 1.02746 0.96134 1.23220 0.98479 0.97075 0.97803 1.21776 0.86546 1.00708 0.87963 1.44768 1.14095 1.62322 1.13705 1.19328 0.99522 1.27778 0.90760 0.91373 1.25523 0.96156 1.01167 1.02319 1.69990 1.06891 1.44807 1.37471 0.85178 0.76935 0.77852 0.79495 1.20431 1.21257 1.21005 1.21683 0.93246 0.93162 0.90832 1.21122 1.01096 0.89954 1.01949 1.18249 0.89097 0.85965 1.03901 1.86129 1.20433 1.27792 1.89283 1.23332 0.76926 1.05514 1.01845 0.90797 0.86262 0.91354 0.80698 0.82850 0.75337 0.91289 0.91951 0.90332 0.87871 0.89706 0.90500 0.98719 0.94114 0.95988 0.97826 0.83959 0.92035 0.92696 0.85605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.81 113.37 1.11 1.25 16 2 O -0.32 -6.78 10.27 -77.35 -0.79 -7.57 16 3 C 0.12 2.73 6.71 22.69 0.15 2.89 16 4 C -0.17 -3.22 9.01 22.31 0.20 -3.02 16 5 C -0.07 -1.55 9.53 22.52 0.21 -1.34 16 6 C -0.15 -4.18 5.87 -20.09 -0.12 -4.30 16 7 C 0.56 18.75 6.99 86.72 0.61 19.36 16 8 O -0.57 -22.70 13.32 -3.98 -0.05 -22.75 16 9 N -0.70 -21.69 5.10 -420.52 -2.14 -23.83 16 10 C 0.17 5.95 0.81 4.81 0.00 5.95 16 11 C -0.14 -4.34 8.44 71.98 0.61 -3.73 16 12 C -0.13 -4.33 6.07 31.99 0.19 -4.14 16 13 C 0.15 7.30 5.87 86.86 0.51 7.81 16 14 N -0.62 -33.07 3.39 -691.89 -2.35 -35.42 16 15 C -0.24 -14.29 10.27 84.03 0.86 -13.43 16 16 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 17 C -0.06 -3.35 5.49 84.86 0.47 -2.89 16 18 N -0.94 -55.14 10.09 21.65 0.22 -54.92 16 19 Si 0.98 46.31 29.55 68.60 2.03 48.33 16 20 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 21 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 22 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 23 C 0.14 6.32 6.19 86.75 0.54 6.85 16 24 C -0.12 -3.36 8.58 22.61 0.19 -3.16 16 25 C 0.07 1.92 6.69 22.52 0.15 2.07 16 26 O -0.32 -8.07 10.28 -79.60 -0.82 -8.89 16 27 C 0.02 0.32 9.81 113.37 1.11 1.44 16 28 H 0.07 0.55 7.65 -2.39 -0.02 0.53 16 29 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.07 0.60 7.65 -2.39 -0.02 0.58 16 31 H 0.18 1.96 6.27 -2.91 -0.02 1.94 16 32 H 0.15 2.58 6.39 -2.91 -0.02 2.56 16 33 H 0.41 10.48 6.51 -92.71 -0.60 9.88 16 34 H 0.07 2.01 8.06 -2.39 -0.02 1.99 16 35 H 0.06 2.11 5.97 -2.38 -0.01 2.10 16 36 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.10 2.71 8.07 -2.39 -0.02 2.69 16 38 H 0.08 2.81 8.05 -2.39 -0.02 2.79 16 39 H 0.08 4.14 5.88 -2.39 -0.01 4.13 16 40 H -0.01 -0.25 8.14 -2.39 -0.02 -0.27 16 41 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 42 H 0.02 1.04 7.76 -2.39 -0.02 1.02 16 43 H 0.00 0.19 6.91 -2.39 -0.02 0.17 16 44 H 0.14 3.97 5.87 -2.91 -0.02 3.95 16 45 H 0.06 1.03 7.65 -2.39 -0.02 1.01 16 46 H 0.05 1.00 7.67 -2.39 -0.02 0.98 16 47 H 0.13 1.52 8.14 -2.38 -0.02 1.50 16 Total: -1.00 -76.46 374.51 3.29 -73.16 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: 0.40 Total: 20.28 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: 6.81 Total: 11.60 kcal Atomic # 7 Polarization: -109.90 SS G_CDS: -4.27 Total: -114.17 kcal Atomic # 8 Polarization: -37.54 SS G_CDS: -1.66 Total: -39.21 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.33 kcal Total: -76.46 3.29 -73.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046812500.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.572 kcal (2) G-P(sol) polarization free energy of solvation -76.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds