Wall clock time and date at job start Tue Mar 31 2020 20:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35794 * 117.00343 * 2 1 4 4 C 1.38837 * 119.92515 * 0.02562 * 3 2 1 5 5 C 1.37792 * 120.14589 * 179.97438 * 4 3 2 6 6 C 1.39697 * 120.00774 * 359.97230 * 5 4 3 7 7 C 1.47608 * 120.07585 * 179.97438 * 6 5 4 8 8 O 1.21585 * 120.00595 * 180.02562 * 7 6 5 9 9 N 1.34779 * 119.99876 * 0.02562 * 7 6 5 10 10 C 1.46499 * 120.00337 * 179.97438 * 9 7 6 11 11 C 1.53003 * 110.63854 * 300.70190 * 10 9 7 12 12 C 1.55154 * 110.72257 * 177.55820 * 10 9 7 13 13 C 1.55389 * 101.36835 * 277.04362 * 12 10 9 14 14 N 1.47424 * 104.87151 * 323.01653 * 13 12 10 15 15 C 1.36939 * 125.64807 * 204.09461 * 14 13 12 16 16 H 1.07995 * 119.99676 * 180.02562 * 15 14 13 17 17 C 1.38806 * 119.99862 * 0.04354 * 15 14 13 18 18 N 1.31624 * 119.99895 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00223 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46759 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47265 * 119.99549 * 19 17 15 22 22 H 1.48498 * 109.47631 * 240.00105 * 19 17 15 23 23 C 1.47026 * 108.70443 * 24.13434 * 14 13 12 24 24 C 1.39731 * 119.85830 * 0.02562 * 6 5 4 25 25 C 1.38150 * 119.84794 * 359.76301 * 24 6 5 26 26 O 1.36004 * 120.00273 * 180.23105 * 25 24 6 27 27 C 1.42897 * 116.99646 * 0.25983 * 26 25 24 28 28 H 1.09001 * 109.47103 * 300.00227 * 1 2 3 29 29 H 1.09004 * 109.47054 * 59.99731 * 1 2 3 30 30 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 31 31 H 1.07992 * 119.92926 * 359.96957 * 4 3 2 32 32 H 1.08000 * 119.99719 * 179.97438 * 5 4 3 33 33 H 0.97009 * 119.99921 * 359.97438 * 9 7 6 34 34 H 1.09002 * 109.47027 * 59.29975 * 11 10 9 35 35 H 1.09000 * 109.46814 * 179.29459 * 11 10 9 36 36 H 1.08999 * 109.47114 * 299.29691 * 11 10 9 37 37 H 1.09003 * 111.00503 * 35.21612 * 12 10 9 38 38 H 1.09000 * 111.00446 * 159.05828 * 12 10 9 39 39 H 1.08998 * 110.34486 * 204.16412 * 13 12 10 40 40 H 1.08999 * 110.34822 * 81.87019 * 13 12 10 41 41 H 0.97001 * 119.99707 * 180.02562 * 18 17 15 42 42 H 1.09005 * 109.88230 * 239.52197 * 23 14 13 43 43 H 1.08998 * 110.01323 * 118.43367 * 23 14 13 44 44 H 1.07996 * 120.07715 * 179.97438 * 24 6 5 45 45 H 1.08999 * 109.47269 * 299.99663 * 27 26 25 46 46 H 1.08999 * 109.47678 * 60.00135 * 27 26 25 47 47 H 1.09003 * 109.46866 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0456 1.2099 0.0000 4 6 1.2880 2.3733 0.0005 5 6 1.9089 3.6034 0.0011 6 6 3.3037 3.6820 0.0017 7 6 3.9704 4.9990 0.0017 8 8 5.1844 5.0659 0.0017 9 7 3.2333 6.1274 0.0016 10 6 3.8949 7.4345 0.0022 11 6 4.7902 7.5852 1.2337 12 6 2.8493 8.5791 -0.0598 13 6 2.5631 8.6502 -1.5855 14 7 3.8654 8.3937 -2.2271 15 6 4.2282 8.7952 -3.4850 16 1 5.2101 8.5561 -3.8658 17 6 3.3341 9.5097 -4.2703 18 7 2.1377 9.8017 -3.8057 19 14 3.8292 10.0580 -5.9860 20 1 5.2159 9.6079 -6.2686 21 1 2.9032 9.4624 -6.9826 22 1 3.7620 11.5391 -6.0711 23 6 4.7098 7.6345 -1.2930 24 6 4.0664 2.5113 0.0012 25 6 3.4377 1.2811 0.0050 26 8 4.1771 0.1396 0.0093 27 6 5.5984 0.2873 0.0153 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2097 2.3142 0.0005 32 1 1.3172 4.5069 0.0011 33 1 2.2647 6.0741 0.0012 34 1 5.5434 6.7972 1.2341 35 1 5.2819 8.5577 1.2086 36 1 4.1833 7.5081 2.1358 37 1 1.9501 8.3174 0.4979 38 1 3.2732 9.5156 0.3027 39 1 2.1952 9.6398 -1.8563 40 1 1.8418 7.8849 -1.8719 41 1 1.5128 10.3007 -4.3547 42 1 5.6192 8.1949 -1.0760 43 1 4.9652 6.6663 -1.7237 44 1 5.1449 2.5679 0.0012 45 1 5.9105 0.8350 -0.8739 46 1 5.9029 0.8367 0.9061 47 1 6.0659 -0.6974 0.0187 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046812501.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:51 Heat of formation + Delta-G solvation = -45.037708 kcal Electronic energy + Delta-G solvation = -29340.708358 eV Core-core repulsion = 25297.727553 eV Total energy + Delta-G solvation = -4042.980805 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.90130 -39.79490 -38.68095 -37.54563 -36.45494 -34.03594 -32.08765 -30.70269 -30.55772 -29.72826 -28.64266 -27.52999 -27.38507 -25.66386 -24.00889 -23.32406 -22.29019 -20.85046 -20.32251 -19.03531 -18.91350 -17.71497 -16.96746 -16.83777 -16.31341 -16.27777 -15.49330 -15.46019 -15.00040 -14.70775 -14.66106 -14.63849 -14.23345 -13.69274 -13.35103 -13.15407 -12.91186 -12.82294 -12.68083 -12.36220 -12.23808 -12.00628 -11.72442 -11.58066 -11.56769 -11.41224 -11.35514 -11.13874 -10.92215 -10.86247 -10.40463 -10.34248 -10.04908 -9.95113 -9.66281 -9.31670 -8.97763 -8.66116 -8.62152 -8.03901 -6.79823 -5.64251 -3.04388 0.77824 1.13633 2.93549 2.96741 3.05990 3.39964 3.41550 3.47040 3.49486 3.81562 4.50522 4.51686 4.67905 4.73756 4.87724 4.89126 4.93319 5.04996 5.07786 5.12395 5.19238 5.21796 5.36946 5.40218 5.44410 5.50691 5.57959 5.73961 5.82024 5.96089 6.06345 6.13926 6.18735 6.23661 6.33132 6.37028 6.45942 6.53076 6.71513 6.78465 6.85139 7.15069 7.31444 7.45406 7.65123 7.80230 7.87209 8.36177 8.51061 9.24494 9.85127 10.49933 11.40174 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013260 B = 0.002945 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.078535 B = 9505.338184 C = 9903.251255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.304 6.304 3 C 0.120 3.880 4 C -0.181 4.181 5 C -0.078 4.078 6 C -0.126 4.126 7 C 0.562 3.438 8 O -0.537 6.537 9 N -0.701 5.701 10 C 0.159 3.841 11 C -0.151 4.151 12 C -0.147 4.147 13 C 0.153 3.847 14 N -0.604 5.604 15 C -0.216 4.216 16 H 0.077 0.923 17 C -0.014 4.014 18 N -0.925 5.925 19 Si 0.914 3.086 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.291 1.291 23 C 0.137 3.863 24 C -0.114 4.114 25 C 0.089 3.911 26 O -0.307 6.307 27 C 0.024 3.976 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.100 0.900 31 H 0.141 0.859 32 H 0.133 0.867 33 H 0.396 0.604 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.049 0.951 37 H 0.062 0.938 38 H 0.077 0.923 39 H 0.108 0.892 40 H 0.010 0.990 41 H 0.250 0.750 42 H 0.030 0.970 43 H 0.033 0.967 44 H 0.149 0.851 45 H 0.058 0.942 46 H 0.057 0.943 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.182 -16.988 12.545 21.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.217 6.217 3 C 0.074 3.926 4 C -0.200 4.200 5 C -0.097 4.097 6 C -0.129 4.129 7 C 0.349 3.651 8 O -0.415 6.415 9 N -0.352 5.352 10 C 0.074 3.926 11 C -0.209 4.209 12 C -0.186 4.186 13 C 0.028 3.972 14 N -0.330 5.330 15 C -0.344 4.344 16 H 0.095 0.905 17 C -0.208 4.208 18 N -0.574 5.574 19 Si 0.745 3.255 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.218 1.218 23 C 0.011 3.989 24 C -0.134 4.134 25 C 0.043 3.957 26 O -0.221 6.221 27 C -0.071 4.071 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.119 0.881 31 H 0.159 0.841 32 H 0.151 0.849 33 H 0.232 0.768 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.096 0.904 39 H 0.126 0.874 40 H 0.028 0.972 41 H 0.061 0.939 42 H 0.048 0.952 43 H 0.051 0.949 44 H 0.167 0.833 45 H 0.077 0.923 46 H 0.075 0.925 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.358 -17.195 12.352 21.303 hybrid contribution -0.413 0.501 -1.002 1.194 sum -2.771 -16.694 11.350 20.376 Atomic orbital electron populations 1.23122 0.78321 1.04111 1.01533 1.86134 1.21243 1.25925 1.88437 1.18457 0.89123 0.85261 0.99763 1.20982 1.00198 0.91108 1.07687 1.21055 0.93331 0.97629 0.97703 1.19751 0.93390 0.93490 1.06283 1.17988 0.86973 0.83665 0.76491 1.90724 1.13409 1.87355 1.50016 1.45902 1.09814 1.05340 1.74164 1.21373 0.93819 0.81641 0.95814 1.22054 1.00031 1.02829 0.95985 1.23446 0.96930 0.96655 1.01606 1.22020 0.87377 1.03032 0.84749 1.44506 1.11888 1.63102 1.13505 1.19145 0.98704 1.27607 0.88950 0.90496 1.24756 0.96127 1.01165 0.98796 1.69785 1.06396 1.45225 1.36007 0.85998 0.77569 0.78060 0.83920 1.20541 1.21836 1.21767 1.21598 0.93176 0.95497 0.88660 1.21154 1.01240 0.89598 1.01373 1.18065 0.88228 0.86066 1.03310 1.86155 1.18940 1.27745 1.89231 1.23115 0.78327 1.03888 1.01800 0.92494 0.92386 0.88130 0.84123 0.84912 0.76835 0.90781 0.91739 0.93162 0.91893 0.90445 0.87416 0.97203 0.93891 0.95174 0.94930 0.83307 0.92326 0.92463 0.88136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 101.05 0.99 1.16 16 2 O -0.30 -3.48 10.26 -33.76 -0.35 -3.83 16 3 C 0.12 1.48 6.71 -38.93 -0.26 1.21 16 4 C -0.18 -1.92 9.01 -39.52 -0.36 -2.28 16 5 C -0.08 -0.92 9.53 -39.20 -0.37 -1.29 16 6 C -0.13 -1.79 5.87 -104.97 -0.62 -2.41 16 7 C 0.56 9.44 6.98 -12.44 -0.09 9.35 16 8 O -0.54 -10.44 13.28 5.29 0.07 -10.37 16 9 N -0.70 -11.30 5.09 -46.91 -0.24 -11.54 16 10 C 0.16 2.86 0.80 -129.99 -0.10 2.76 16 11 C -0.15 -2.39 8.41 37.16 0.31 -2.08 16 12 C -0.15 -2.65 6.11 -24.32 -0.15 -2.80 16 13 C 0.15 3.61 5.88 -2.27 -0.01 3.60 16 14 N -0.60 -15.71 3.40 -169.77 -0.58 -16.29 16 15 C -0.22 -6.14 10.27 -15.06 -0.15 -6.30 16 16 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 17 C -0.01 -0.38 5.49 -17.43 -0.10 -0.48 16 18 N -0.92 -26.78 10.09 55.49 0.56 -26.22 16 19 Si 0.91 22.38 29.55 -169.99 -5.02 17.35 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 23 C 0.14 3.09 6.16 -3.06 -0.02 3.07 16 24 C -0.11 -1.56 8.58 -39.06 -0.33 -1.89 16 25 C 0.09 1.17 6.69 -39.18 -0.26 0.91 16 26 O -0.31 -3.87 10.28 -34.41 -0.35 -4.22 16 27 C 0.02 0.21 9.81 101.05 0.99 1.20 16 28 H 0.06 0.31 7.65 -51.93 -0.40 -0.08 16 29 H 0.06 0.35 7.65 -51.93 -0.40 -0.05 16 30 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.14 1.08 6.27 -52.49 -0.33 0.75 16 32 H 0.13 1.30 6.39 -52.49 -0.34 0.97 16 33 H 0.40 5.46 6.50 -40.82 -0.27 5.19 16 34 H 0.07 1.27 6.20 -51.93 -0.32 0.95 16 35 H 0.06 0.98 8.12 -51.93 -0.42 0.56 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.94 8.06 -51.93 -0.42 0.53 16 38 H 0.08 1.37 8.05 -51.93 -0.42 0.95 16 39 H 0.11 2.87 5.87 -51.93 -0.30 2.56 16 40 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 41 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 42 H 0.03 0.69 7.80 -51.93 -0.41 0.29 16 43 H 0.03 0.80 6.67 -51.93 -0.35 0.45 16 44 H 0.15 1.97 5.87 -52.49 -0.31 1.67 16 45 H 0.06 0.52 7.65 -51.93 -0.40 0.12 16 46 H 0.06 0.47 7.67 -51.93 -0.40 0.07 16 47 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 374.52 15.07 5.64 5.64 Total: -1.00 -34.27 374.52 -7.50 -41.76 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -6.70 Total: 3.96 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: -0.53 Total: 3.74 kcal Atomic # 7 Polarization: -53.79 SS G_CDS: -0.26 Total: -54.04 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -0.63 Total: -18.42 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.27 -7.50 -41.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046812501.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.274 kcal (2) G-P(sol) polarization free energy of solvation -34.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds