Wall clock time and date at job start Tue Mar 31 2020 20:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35794 * 117.00343 * 2 1 4 4 C 1.38837 * 119.92515 * 0.02562 * 3 2 1 5 5 C 1.37792 * 120.14589 * 179.97438 * 4 3 2 6 6 C 1.39697 * 120.00774 * 359.97230 * 5 4 3 7 7 C 1.47608 * 120.07585 * 179.97438 * 6 5 4 8 8 O 1.21585 * 120.00595 * 180.02562 * 7 6 5 9 9 N 1.34779 * 119.99876 * 0.02562 * 7 6 5 10 10 C 1.46499 * 120.00337 * 179.97438 * 9 7 6 11 11 C 1.53003 * 110.63854 * 300.70190 * 10 9 7 12 12 C 1.55154 * 110.72257 * 177.55820 * 10 9 7 13 13 C 1.55389 * 101.36835 * 277.04362 * 12 10 9 14 14 N 1.47424 * 104.87151 * 323.01653 * 13 12 10 15 15 C 1.36939 * 125.64807 * 204.09461 * 14 13 12 16 16 H 1.07995 * 119.99676 * 180.02562 * 15 14 13 17 17 C 1.38806 * 119.99862 * 0.04354 * 15 14 13 18 18 N 1.31624 * 119.99895 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00223 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46759 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47265 * 119.99549 * 19 17 15 22 22 H 1.48498 * 109.47631 * 240.00105 * 19 17 15 23 23 C 1.47026 * 108.70443 * 24.13434 * 14 13 12 24 24 C 1.39731 * 119.85830 * 0.02562 * 6 5 4 25 25 C 1.38150 * 119.84794 * 359.76301 * 24 6 5 26 26 O 1.36004 * 120.00273 * 180.23105 * 25 24 6 27 27 C 1.42897 * 116.99646 * 0.25983 * 26 25 24 28 28 H 1.09001 * 109.47103 * 300.00227 * 1 2 3 29 29 H 1.09004 * 109.47054 * 59.99731 * 1 2 3 30 30 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 31 31 H 1.07992 * 119.92926 * 359.96957 * 4 3 2 32 32 H 1.08000 * 119.99719 * 179.97438 * 5 4 3 33 33 H 0.97009 * 119.99921 * 359.97438 * 9 7 6 34 34 H 1.09002 * 109.47027 * 59.29975 * 11 10 9 35 35 H 1.09000 * 109.46814 * 179.29459 * 11 10 9 36 36 H 1.08999 * 109.47114 * 299.29691 * 11 10 9 37 37 H 1.09003 * 111.00503 * 35.21612 * 12 10 9 38 38 H 1.09000 * 111.00446 * 159.05828 * 12 10 9 39 39 H 1.08998 * 110.34486 * 204.16412 * 13 12 10 40 40 H 1.08999 * 110.34822 * 81.87019 * 13 12 10 41 41 H 0.97001 * 119.99707 * 180.02562 * 18 17 15 42 42 H 1.09005 * 109.88230 * 239.52197 * 23 14 13 43 43 H 1.08998 * 110.01323 * 118.43367 * 23 14 13 44 44 H 1.07996 * 120.07715 * 179.97438 * 24 6 5 45 45 H 1.08999 * 109.47269 * 299.99663 * 27 26 25 46 46 H 1.08999 * 109.47678 * 60.00135 * 27 26 25 47 47 H 1.09003 * 109.46866 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0456 1.2099 0.0000 4 6 1.2880 2.3733 0.0005 5 6 1.9089 3.6034 0.0011 6 6 3.3037 3.6820 0.0017 7 6 3.9704 4.9990 0.0017 8 8 5.1844 5.0659 0.0017 9 7 3.2333 6.1274 0.0016 10 6 3.8949 7.4345 0.0022 11 6 4.7902 7.5852 1.2337 12 6 2.8493 8.5791 -0.0598 13 6 2.5631 8.6502 -1.5855 14 7 3.8654 8.3937 -2.2271 15 6 4.2282 8.7952 -3.4850 16 1 5.2101 8.5561 -3.8658 17 6 3.3341 9.5097 -4.2703 18 7 2.1377 9.8017 -3.8057 19 14 3.8292 10.0580 -5.9860 20 1 5.2159 9.6079 -6.2686 21 1 2.9032 9.4624 -6.9826 22 1 3.7620 11.5391 -6.0711 23 6 4.7098 7.6345 -1.2930 24 6 4.0664 2.5113 0.0012 25 6 3.4377 1.2811 0.0050 26 8 4.1771 0.1396 0.0093 27 6 5.5984 0.2873 0.0153 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2097 2.3142 0.0005 32 1 1.3172 4.5069 0.0011 33 1 2.2647 6.0741 0.0012 34 1 5.5434 6.7972 1.2341 35 1 5.2819 8.5577 1.2086 36 1 4.1833 7.5081 2.1358 37 1 1.9501 8.3174 0.4979 38 1 3.2732 9.5156 0.3027 39 1 2.1952 9.6398 -1.8563 40 1 1.8418 7.8849 -1.8719 41 1 1.5128 10.3007 -4.3547 42 1 5.6192 8.1949 -1.0760 43 1 4.9652 6.6663 -1.7237 44 1 5.1449 2.5679 0.0012 45 1 5.9105 0.8350 -0.8739 46 1 5.9029 0.8367 0.9061 47 1 6.0659 -0.6974 0.0187 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046812501.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:50 Heat of formation + Delta-G solvation = -68.075338 kcal Electronic energy + Delta-G solvation = -29341.707344 eV Core-core repulsion = 25297.727553 eV Total energy + Delta-G solvation = -4043.979791 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.89720 -41.05817 -39.51961 -39.00163 -37.53379 -35.76552 -33.75388 -32.11298 -31.51137 -31.00473 -30.29066 -28.26534 -28.12256 -27.54462 -25.53249 -24.61158 -23.19763 -22.32168 -21.88357 -20.48068 -19.90113 -18.98548 -18.56301 -17.80840 -17.45296 -17.12673 -17.03313 -16.64285 -16.20198 -16.00405 -15.83615 -15.58589 -15.53272 -15.47113 -14.75734 -14.33349 -14.11269 -14.04508 -13.80717 -13.66558 -13.48596 -13.30935 -13.12080 -13.04389 -12.83859 -12.78404 -12.41020 -12.14740 -12.13393 -12.09272 -12.02655 -11.99530 -11.94909 -11.68880 -11.54302 -10.76268 -10.73763 -10.08078 -9.87856 -8.96968 -8.88001 -7.78987 -5.22240 -0.23635 0.21986 1.45262 1.45472 1.56203 1.79943 2.09711 2.25070 2.27143 2.48071 2.74418 3.30259 3.53972 3.68888 3.71422 3.76564 3.89639 4.02118 4.03291 4.15942 4.18126 4.33836 4.34179 4.42413 4.44537 4.57078 4.63392 4.67689 4.69153 4.77444 4.79550 4.85262 4.89300 4.91540 5.02625 5.09093 5.09855 5.19382 5.35648 5.42669 5.44497 5.61691 5.68443 5.80979 5.99168 6.31508 6.47112 6.59306 7.11407 7.24496 7.77096 8.40578 9.22398 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013260 B = 0.002945 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.078535 B = 9505.338184 C = 9903.251255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.323 6.323 3 C 0.119 3.881 4 C -0.173 4.173 5 C -0.072 4.072 6 C -0.149 4.149 7 C 0.559 3.441 8 O -0.571 6.571 9 N -0.696 5.696 10 C 0.170 3.830 11 C -0.142 4.142 12 C -0.127 4.127 13 C 0.155 3.845 14 N -0.623 5.623 15 C -0.241 4.241 16 H 0.068 0.932 17 C -0.060 4.060 18 N -0.942 5.942 19 Si 0.977 3.023 20 H -0.274 1.274 21 H -0.290 1.290 22 H -0.286 1.286 23 C 0.137 3.863 24 C -0.122 4.122 25 C 0.073 3.927 26 O -0.322 6.322 27 C 0.018 3.982 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.119 0.881 31 H 0.176 0.824 32 H 0.155 0.845 33 H 0.409 0.591 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.104 0.896 38 H 0.085 0.915 39 H 0.077 0.923 40 H -0.006 1.006 41 H 0.249 0.751 42 H 0.022 0.978 43 H 0.006 0.994 44 H 0.142 0.858 45 H 0.054 0.946 46 H 0.061 0.939 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.937 -17.634 13.616 22.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.236 6.236 3 C 0.072 3.928 4 C -0.191 4.191 5 C -0.091 4.091 6 C -0.152 4.152 7 C 0.348 3.652 8 O -0.452 6.452 9 N -0.348 5.348 10 C 0.083 3.917 11 C -0.200 4.200 12 C -0.166 4.166 13 C 0.030 3.970 14 N -0.349 5.349 15 C -0.371 4.371 16 H 0.086 0.914 17 C -0.253 4.253 18 N -0.592 5.592 19 Si 0.805 3.195 20 H -0.199 1.199 21 H -0.217 1.217 22 H -0.213 1.213 23 C 0.010 3.990 24 C -0.142 4.142 25 C 0.028 3.972 26 O -0.236 6.236 27 C -0.076 4.076 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.137 0.863 31 H 0.193 0.807 32 H 0.172 0.828 33 H 0.247 0.753 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.122 0.878 38 H 0.103 0.897 39 H 0.095 0.905 40 H 0.012 0.988 41 H 0.059 0.941 42 H 0.040 0.960 43 H 0.024 0.976 44 H 0.160 0.840 45 H 0.073 0.927 46 H 0.079 0.921 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.137 -17.857 13.446 22.733 hybrid contribution 0.100 0.586 -1.371 1.494 sum -4.037 -17.270 12.076 21.456 Atomic orbital electron populations 1.23478 0.75886 1.05942 1.02829 1.86121 1.23800 1.25629 1.88074 1.18707 0.89051 0.86251 0.98777 1.21319 1.01778 0.89888 1.06136 1.21301 0.92291 0.99077 0.96392 1.19631 0.94595 0.92064 1.08953 1.18397 0.86670 0.84600 0.75502 1.90701 1.15004 1.87920 1.51620 1.45789 1.10459 1.04542 1.73981 1.21195 0.93643 0.82617 0.94242 1.21975 0.99625 1.02569 0.95833 1.23302 0.98585 0.97074 0.97616 1.21857 0.86085 1.00583 0.88461 1.44782 1.13239 1.63447 1.13446 1.19390 0.98727 1.28304 0.90633 0.91391 1.25522 0.96245 1.01246 1.02252 1.70010 1.06933 1.45325 1.36922 0.85033 0.77389 0.77530 0.79500 1.19930 1.21685 1.21265 1.21669 0.93511 0.93444 0.90339 1.21122 1.01082 0.89986 1.01967 1.18253 0.89108 0.85951 1.03917 1.86128 1.20425 1.27795 1.89285 1.23328 0.76938 1.05511 1.01832 0.90786 0.91344 0.86267 0.80670 0.82790 0.75314 0.92316 0.91187 0.90263 0.87795 0.89677 0.90510 0.98756 0.94150 0.96023 0.97617 0.84017 0.92710 0.92054 0.85598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.81 113.37 1.11 1.24 16 2 O -0.32 -6.78 10.26 -77.23 -0.79 -7.58 16 3 C 0.12 2.74 6.71 22.69 0.15 2.89 16 4 C -0.17 -3.21 9.01 22.31 0.20 -3.01 16 5 C -0.07 -1.54 9.53 22.52 0.21 -1.33 16 6 C -0.15 -4.19 5.87 -20.09 -0.12 -4.31 16 7 C 0.56 18.82 6.98 86.72 0.61 19.42 16 8 O -0.57 -22.91 13.28 -3.98 -0.05 -22.96 16 9 N -0.70 -21.63 5.09 -420.60 -2.14 -23.77 16 10 C 0.17 5.92 0.80 4.79 0.00 5.93 16 11 C -0.14 -4.26 8.41 71.98 0.61 -3.65 16 12 C -0.13 -4.31 6.11 32.15 0.20 -4.12 16 13 C 0.15 7.32 5.88 87.02 0.51 7.83 16 14 N -0.62 -33.13 3.40 -691.03 -2.35 -35.48 16 15 C -0.24 -14.12 10.27 84.03 0.86 -13.25 16 16 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 17 C -0.06 -3.43 5.49 84.86 0.47 -2.96 16 18 N -0.94 -55.23 10.09 21.65 0.22 -55.01 16 19 Si 0.98 46.45 29.55 68.60 2.03 48.48 16 20 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 21 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 22 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 23 C 0.14 6.30 6.16 86.73 0.53 6.84 16 24 C -0.12 -3.39 8.58 22.61 0.19 -3.20 16 25 C 0.07 1.92 6.69 22.53 0.15 2.07 16 26 O -0.32 -8.11 10.28 -79.57 -0.82 -8.92 16 27 C 0.02 0.33 9.81 113.37 1.11 1.44 16 28 H 0.07 0.55 7.65 -2.39 -0.02 0.53 16 29 H 0.07 0.60 7.65 -2.38 -0.02 0.58 16 30 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.18 1.95 6.27 -2.91 -0.02 1.93 16 32 H 0.15 2.56 6.39 -2.91 -0.02 2.54 16 33 H 0.41 10.36 6.50 -92.70 -0.60 9.76 16 34 H 0.06 1.98 6.20 -2.39 -0.01 1.96 16 35 H 0.07 2.01 8.12 -2.39 -0.02 1.99 16 36 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.10 2.71 8.06 -2.39 -0.02 2.69 16 38 H 0.08 2.80 8.05 -2.39 -0.02 2.79 16 39 H 0.08 4.14 5.87 -2.39 -0.01 4.13 16 40 H -0.01 -0.27 8.14 -2.39 -0.02 -0.29 16 41 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 42 H 0.02 1.03 7.80 -2.38 -0.02 1.01 16 43 H 0.01 0.30 6.67 -2.39 -0.02 0.28 16 44 H 0.14 3.99 5.87 -2.91 -0.02 3.97 16 45 H 0.05 1.01 7.65 -2.39 -0.02 0.99 16 46 H 0.06 1.04 7.67 -2.39 -0.02 1.02 16 47 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -76.92 374.52 3.30 -73.63 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: 0.40 Total: 19.78 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: 6.80 Total: 11.84 kcal Atomic # 7 Polarization: -109.99 SS G_CDS: -4.27 Total: -114.26 kcal Atomic # 8 Polarization: -37.80 SS G_CDS: -1.66 Total: -39.46 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Total: -76.92 3.30 -73.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046812501.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.550 kcal (2) G-P(sol) polarization free energy of solvation -76.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds