Wall clock time and date at job start Tue Mar 31 2020 20:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35988 * 116.99729 * 2 1 4 4 C 1.38965 * 119.90802 * 359.97438 * 3 2 1 5 5 C 1.38033 * 120.33838 * 180.02562 * 4 3 2 6 6 C 1.38676 * 120.14260 * 359.72134 * 5 4 3 7 7 O 1.35731 * 120.09304 * 180.27980 * 6 5 4 8 8 C 1.42897 * 117.00041 * 0.29630 * 7 6 5 9 9 C 1.40083 * 119.81457 * 0.57285 * 6 5 4 10 10 C 1.47543 * 120.16721 * 179.69944 * 9 6 5 11 11 O 1.21584 * 120.00106 * 359.73023 * 10 9 6 12 12 N 1.34774 * 119.99835 * 179.73087 * 10 9 6 13 13 C 1.46501 * 119.99732 * 180.02562 * 12 10 9 14 14 C 1.52995 * 110.78169 * 298.21030 * 13 12 10 15 15 C 1.55405 * 110.69436 * 174.82160 * 13 12 10 16 16 C 1.54914 * 101.66697 * 277.04903 * 15 13 12 17 17 N 1.47426 * 104.82992 * 323.07703 * 16 15 13 18 18 C 1.36936 * 125.64583 * 204.09666 * 17 16 15 19 19 H 1.07997 * 119.99931 * 180.02562 * 18 17 16 20 20 C 1.38819 * 120.00094 * 0.03301 * 18 17 16 21 21 N 1.31618 * 119.99956 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99883 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47088 * 60.00291 * 22 20 18 24 24 H 1.48494 * 109.47009 * 180.02562 * 22 20 18 25 25 H 1.48492 * 109.47347 * 300.00261 * 22 20 18 26 26 C 1.47018 * 108.70517 * 24.12623 * 17 16 15 27 27 C 1.38242 * 119.90668 * 180.02562 * 3 2 1 28 28 H 1.08990 * 109.47094 * 60.00357 * 1 2 3 29 29 H 1.09005 * 109.46734 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47285 * 299.99758 * 1 2 3 31 31 H 1.08005 * 119.82841 * 0.02562 * 4 3 2 32 32 H 1.07999 * 119.92715 * 179.97438 * 5 4 3 33 33 H 1.09005 * 109.47635 * 180.02562 * 8 7 6 34 34 H 1.09004 * 109.47235 * 300.00306 * 8 7 6 35 35 H 1.09002 * 109.47555 * 60.00246 * 8 7 6 36 36 H 0.97000 * 120.00280 * 359.97438 * 12 10 9 37 37 H 1.08999 * 109.47083 * 181.78659 * 14 13 12 38 38 H 1.09002 * 109.47293 * 301.78668 * 14 13 12 39 39 H 1.09000 * 109.47062 * 61.78763 * 14 13 12 40 40 H 1.09000 * 110.89538 * 158.97708 * 15 13 12 41 41 H 1.09000 * 111.06973 * 35.19551 * 15 13 12 42 42 H 1.08999 * 110.37121 * 204.23438 * 16 15 13 43 43 H 1.09003 * 110.36718 * 81.91343 * 16 15 13 44 44 H 0.96998 * 120.00119 * 179.97438 * 21 20 18 45 45 H 1.09002 * 109.88241 * 118.36067 * 26 17 16 46 46 H 1.09000 * 109.88049 * 239.37196 * 26 17 16 47 47 H 1.07995 * 120.07143 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2876 2.3759 -0.0005 5 6 1.9049 3.6105 -0.0011 6 6 3.2890 3.6970 0.0048 7 8 3.8949 4.9115 0.0100 8 6 3.0453 6.0604 0.0157 9 6 4.0599 2.5274 -0.0010 10 6 5.5330 2.6104 -0.0015 11 8 6.0808 3.6959 -0.0020 12 7 6.2715 1.4830 -0.0015 13 6 7.7341 1.5654 -0.0015 14 6 8.2381 2.2711 -1.2620 15 6 8.3639 0.1508 0.1297 16 6 8.3130 -0.0740 1.6616 17 7 8.5977 1.2489 2.2467 18 6 9.1094 1.4753 3.4965 19 1 9.2823 2.4865 3.8341 20 6 9.4059 0.4052 4.3295 21 7 9.1957 -0.8272 3.9178 22 14 10.1033 0.7141 6.0346 23 1 9.1420 1.5266 6.8228 24 1 10.3323 -0.5840 6.7184 25 1 11.3904 1.4454 5.9180 26 6 8.2405 2.2848 1.2665 27 6 3.4270 1.2819 -0.0005 28 1 -0.3633 0.5137 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 0.2093 2.3144 -0.0005 32 1 1.3087 4.5110 -0.0019 33 1 3.6555 6.9637 0.0190 34 1 2.4156 6.0511 -0.8740 35 1 2.4166 6.0431 0.9059 36 1 5.8345 0.6169 -0.0008 37 1 9.3278 2.2925 -1.2553 38 1 7.8907 1.7323 -2.1436 39 1 7.8548 3.2912 -1.2851 40 1 9.3923 0.1480 -0.2316 41 1 7.7658 -0.5946 -0.3946 42 1 9.0727 -0.7944 1.9648 43 1 7.3228 -0.4166 1.9620 44 1 9.4033 -1.5750 4.4996 45 1 7.4537 2.9218 1.6704 46 1 9.1174 2.8860 1.0263 47 1 4.0149 0.3759 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046826408.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:59 Heat of formation + Delta-G solvation = -41.140457 kcal Electronic energy + Delta-G solvation = -29718.579132 eV Core-core repulsion = 25675.767325 eV Total energy + Delta-G solvation = -4042.811807 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.82247 -39.53084 -39.01559 -37.12398 -36.25025 -33.90371 -32.30434 -31.10947 -29.95912 -29.66471 -28.56606 -27.55275 -27.04493 -25.58248 -24.15416 -23.35989 -22.19396 -20.77339 -20.23704 -18.86578 -18.65050 -17.74918 -16.94159 -16.80018 -16.20928 -16.05360 -15.66548 -15.37686 -14.90744 -14.73442 -14.57448 -14.42320 -13.87556 -13.62970 -13.23648 -13.02417 -13.00214 -12.84915 -12.61093 -12.49246 -12.12146 -11.91655 -11.75347 -11.72476 -11.61870 -11.45446 -11.11292 -10.86734 -10.78086 -10.57621 -10.28603 -10.25498 -10.04543 -9.82990 -9.57352 -9.25558 -9.15422 -8.56248 -8.47964 -7.88655 -6.71642 -5.56814 -2.96572 0.70944 1.27044 3.02707 3.03525 3.24728 3.46960 3.50411 3.51997 3.53593 3.88362 4.44051 4.50073 4.57663 4.79143 4.86606 4.88537 4.99662 5.03746 5.09135 5.18543 5.23567 5.29268 5.39318 5.48890 5.52325 5.59042 5.66747 5.68502 5.83766 5.96698 6.03164 6.14773 6.26176 6.27161 6.32605 6.46401 6.55420 6.62255 6.82215 6.96002 7.10537 7.27405 7.34501 7.55060 7.71849 7.89411 7.99695 8.44064 8.68897 9.31895 9.92766 10.58313 11.47514 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011440 B = 0.003405 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2446.949063 B = 8221.980155 C = 8796.731562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.315 6.315 3 C 0.081 3.919 4 C -0.145 4.145 5 C -0.183 4.183 6 C 0.150 3.850 7 O -0.277 6.277 8 C 0.022 3.978 9 C -0.124 4.124 10 C 0.561 3.439 11 O -0.512 6.512 12 N -0.706 5.706 13 C 0.161 3.839 14 C -0.148 4.148 15 C -0.146 4.146 16 C 0.153 3.847 17 N -0.604 5.604 18 C -0.216 4.216 19 H 0.076 0.924 20 C -0.013 4.013 21 N -0.925 5.925 22 Si 0.913 3.087 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.285 1.285 26 C 0.137 3.863 27 C -0.078 4.078 28 H 0.053 0.947 29 H 0.100 0.900 30 H 0.054 0.946 31 H 0.133 0.867 32 H 0.136 0.864 33 H 0.101 0.899 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.395 0.605 37 H 0.063 0.937 38 H 0.049 0.951 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.062 0.938 42 H 0.108 0.892 43 H 0.010 0.990 44 H 0.251 0.749 45 H 0.035 0.965 46 H 0.029 0.971 47 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.881 4.960 -12.767 23.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.229 6.229 3 C 0.036 3.964 4 C -0.164 4.164 5 C -0.202 4.202 6 C 0.102 3.898 7 O -0.188 6.188 8 C -0.073 4.073 9 C -0.128 4.128 10 C 0.347 3.653 11 O -0.388 6.388 12 N -0.357 5.357 13 C 0.075 3.925 14 C -0.207 4.207 15 C -0.185 4.185 16 C 0.028 3.972 17 N -0.330 5.330 18 C -0.344 4.344 19 H 0.094 0.906 20 C -0.208 4.208 21 N -0.575 5.575 22 Si 0.744 3.256 23 H -0.213 1.213 24 H -0.216 1.216 25 H -0.212 1.212 26 C 0.010 3.990 27 C -0.097 4.097 28 H 0.072 0.928 29 H 0.118 0.882 30 H 0.072 0.928 31 H 0.151 0.849 32 H 0.154 0.846 33 H 0.119 0.881 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.230 0.770 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.081 0.919 42 H 0.125 0.875 43 H 0.028 0.972 44 H 0.062 0.938 45 H 0.053 0.947 46 H 0.047 0.953 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -18.086 5.505 -12.568 22.701 hybrid contribution -0.680 -0.077 1.009 1.219 sum -18.765 5.428 -11.559 22.698 Atomic orbital electron populations 1.23036 0.78618 1.03986 1.01083 1.86115 1.21100 1.26258 1.89422 1.18664 0.91911 0.84439 1.01371 1.21142 1.00072 0.91604 1.03558 1.20986 0.92918 0.98586 1.07704 1.18908 0.90311 0.85558 0.95005 1.86426 1.33937 1.11287 1.87163 1.23122 0.95817 0.87610 1.00770 1.19298 0.93865 0.90654 1.09009 1.17740 0.85572 0.84697 0.77287 1.90788 1.72338 1.27342 1.48337 1.45899 1.06805 1.08151 1.74894 1.21373 0.78141 0.97378 0.95618 1.22020 1.00993 1.01762 0.95887 1.23401 1.00101 0.93443 1.01581 1.21932 1.00231 0.89761 0.85265 1.44494 1.74568 1.00750 1.13201 1.19058 1.33464 0.92850 0.89046 0.90644 1.24742 1.02149 0.95241 0.98668 1.69766 1.54710 0.97261 1.35733 0.86159 0.78898 0.76588 0.83930 1.21344 1.21636 1.21218 1.21597 0.97058 0.91922 0.88401 1.20439 0.91761 0.97046 1.00491 0.92845 0.88206 0.92759 0.84937 0.84626 0.88054 0.92947 0.92835 0.76994 0.91808 0.93178 0.91008 0.90563 0.91940 0.87473 0.97193 0.93840 0.94672 0.95276 0.83969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.31 -3.48 10.49 -19.70 -0.21 -3.69 16 3 C 0.08 0.96 6.68 -39.31 -0.26 0.70 16 4 C -0.14 -1.46 9.02 -39.39 -0.36 -1.82 16 5 C -0.18 -1.98 9.02 -39.49 -0.36 -2.34 16 6 C 0.15 2.14 6.70 -38.73 -0.26 1.88 16 7 O -0.28 -4.15 8.56 -40.82 -0.35 -4.50 16 8 C 0.02 0.21 9.81 101.05 0.99 1.20 16 9 C -0.12 -1.92 5.88 -104.86 -0.62 -2.54 16 10 C 0.56 10.22 6.99 -12.47 -0.09 10.13 16 11 O -0.51 -10.76 12.11 -16.63 -0.20 -10.96 16 12 N -0.71 -12.21 5.10 -46.81 -0.24 -12.44 16 13 C 0.16 3.04 0.81 -129.85 -0.11 2.93 16 14 C -0.15 -2.47 8.42 37.15 0.31 -2.15 16 15 C -0.15 -2.76 6.10 -24.44 -0.15 -2.91 16 16 C 0.15 3.74 5.87 -2.53 -0.01 3.73 16 17 N -0.60 -16.22 3.39 -170.07 -0.58 -16.80 16 18 C -0.22 -6.30 10.27 -15.06 -0.15 -6.45 16 19 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 20 C -0.01 -0.38 5.49 -17.43 -0.10 -0.48 16 21 N -0.93 -27.38 10.09 55.49 0.56 -26.82 16 22 Si 0.91 22.80 29.55 -169.99 -5.02 17.77 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 C 0.14 3.21 6.12 -3.07 -0.02 3.19 16 27 C -0.08 -1.04 9.47 -39.03 -0.37 -1.41 16 28 H 0.05 0.28 7.65 -51.93 -0.40 -0.12 16 29 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.31 7.65 -51.93 -0.40 -0.08 16 31 H 0.13 0.93 6.27 -52.48 -0.33 0.60 16 32 H 0.14 1.07 6.29 -52.49 -0.33 0.74 16 33 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.05 0.38 7.65 -51.93 -0.40 -0.01 16 35 H 0.05 0.42 7.67 -51.93 -0.40 0.03 16 36 H 0.39 5.95 6.50 -40.82 -0.27 5.69 16 37 H 0.06 1.01 8.13 -51.93 -0.42 0.59 16 38 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 1.29 6.46 -51.93 -0.34 0.96 16 40 H 0.08 1.41 8.04 -51.93 -0.42 0.99 16 41 H 0.06 1.00 8.04 -51.93 -0.42 0.58 16 42 H 0.11 2.93 5.87 -51.93 -0.30 2.63 16 43 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 44 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 45 H 0.04 0.90 6.47 -51.93 -0.34 0.57 16 46 H 0.03 0.69 7.82 -51.93 -0.41 0.29 16 47 H 0.14 1.73 6.40 -52.49 -0.34 1.39 16 LS Contribution 372.73 15.07 5.62 5.62 Total: -1.00 -35.36 372.73 -7.70 -43.06 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -6.73 Total: 3.92 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: -0.55 Total: 4.84 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: -0.26 Total: -56.06 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: -0.76 Total: -19.15 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.36 -7.70 -43.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046826408.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.916 kcal (2) G-P(sol) polarization free energy of solvation -35.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds