Wall clock time and date at job start Tue Mar 31 2020 20:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35988 * 116.99729 * 2 1 4 4 C 1.38965 * 119.90802 * 359.97438 * 3 2 1 5 5 C 1.38033 * 120.33838 * 180.02562 * 4 3 2 6 6 C 1.38676 * 120.14260 * 359.72134 * 5 4 3 7 7 O 1.35731 * 120.09304 * 180.27980 * 6 5 4 8 8 C 1.42897 * 117.00041 * 0.29630 * 7 6 5 9 9 C 1.40083 * 119.81457 * 0.57285 * 6 5 4 10 10 C 1.47543 * 120.16721 * 179.69944 * 9 6 5 11 11 O 1.21584 * 120.00106 * 359.73023 * 10 9 6 12 12 N 1.34774 * 119.99835 * 179.73087 * 10 9 6 13 13 C 1.46501 * 119.99732 * 180.02562 * 12 10 9 14 14 C 1.52995 * 110.78169 * 298.21030 * 13 12 10 15 15 C 1.55405 * 110.69436 * 174.82160 * 13 12 10 16 16 C 1.54914 * 101.66697 * 277.04903 * 15 13 12 17 17 N 1.47426 * 104.82992 * 323.07703 * 16 15 13 18 18 C 1.36936 * 125.64583 * 204.09666 * 17 16 15 19 19 H 1.07997 * 119.99931 * 180.02562 * 18 17 16 20 20 C 1.38819 * 120.00094 * 0.03301 * 18 17 16 21 21 N 1.31618 * 119.99956 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99883 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47088 * 60.00291 * 22 20 18 24 24 H 1.48494 * 109.47009 * 180.02562 * 22 20 18 25 25 H 1.48492 * 109.47347 * 300.00261 * 22 20 18 26 26 C 1.47018 * 108.70517 * 24.12623 * 17 16 15 27 27 C 1.38242 * 119.90668 * 180.02562 * 3 2 1 28 28 H 1.08990 * 109.47094 * 60.00357 * 1 2 3 29 29 H 1.09005 * 109.46734 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47285 * 299.99758 * 1 2 3 31 31 H 1.08005 * 119.82841 * 0.02562 * 4 3 2 32 32 H 1.07999 * 119.92715 * 179.97438 * 5 4 3 33 33 H 1.09005 * 109.47635 * 180.02562 * 8 7 6 34 34 H 1.09004 * 109.47235 * 300.00306 * 8 7 6 35 35 H 1.09002 * 109.47555 * 60.00246 * 8 7 6 36 36 H 0.97000 * 120.00280 * 359.97438 * 12 10 9 37 37 H 1.08999 * 109.47083 * 181.78659 * 14 13 12 38 38 H 1.09002 * 109.47293 * 301.78668 * 14 13 12 39 39 H 1.09000 * 109.47062 * 61.78763 * 14 13 12 40 40 H 1.09000 * 110.89538 * 158.97708 * 15 13 12 41 41 H 1.09000 * 111.06973 * 35.19551 * 15 13 12 42 42 H 1.08999 * 110.37121 * 204.23438 * 16 15 13 43 43 H 1.09003 * 110.36718 * 81.91343 * 16 15 13 44 44 H 0.96998 * 120.00119 * 179.97438 * 21 20 18 45 45 H 1.09002 * 109.88241 * 118.36067 * 26 17 16 46 46 H 1.09000 * 109.88049 * 239.37196 * 26 17 16 47 47 H 1.07995 * 120.07143 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2876 2.3759 -0.0005 5 6 1.9049 3.6105 -0.0011 6 6 3.2890 3.6970 0.0048 7 8 3.8949 4.9115 0.0100 8 6 3.0453 6.0604 0.0157 9 6 4.0599 2.5274 -0.0010 10 6 5.5330 2.6104 -0.0015 11 8 6.0808 3.6959 -0.0020 12 7 6.2715 1.4830 -0.0015 13 6 7.7341 1.5654 -0.0015 14 6 8.2381 2.2711 -1.2620 15 6 8.3639 0.1508 0.1297 16 6 8.3130 -0.0740 1.6616 17 7 8.5977 1.2489 2.2467 18 6 9.1094 1.4753 3.4965 19 1 9.2823 2.4865 3.8341 20 6 9.4059 0.4052 4.3295 21 7 9.1957 -0.8272 3.9178 22 14 10.1033 0.7141 6.0346 23 1 9.1420 1.5266 6.8228 24 1 10.3323 -0.5840 6.7184 25 1 11.3904 1.4454 5.9180 26 6 8.2405 2.2848 1.2665 27 6 3.4270 1.2819 -0.0005 28 1 -0.3633 0.5137 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 0.2093 2.3144 -0.0005 32 1 1.3087 4.5110 -0.0019 33 1 3.6555 6.9637 0.0190 34 1 2.4156 6.0511 -0.8740 35 1 2.4166 6.0431 0.9059 36 1 5.8345 0.6169 -0.0008 37 1 9.3278 2.2925 -1.2553 38 1 7.8907 1.7323 -2.1436 39 1 7.8548 3.2912 -1.2851 40 1 9.3923 0.1480 -0.2316 41 1 7.7658 -0.5946 -0.3946 42 1 9.0727 -0.7944 1.9648 43 1 7.3228 -0.4166 1.9620 44 1 9.4033 -1.5750 4.4996 45 1 7.4537 2.9218 1.6704 46 1 9.1174 2.8860 1.0263 47 1 4.0149 0.3759 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046826408.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:58 Heat of formation + Delta-G solvation = -65.143107 kcal Electronic energy + Delta-G solvation = -29719.619965 eV Core-core repulsion = 25675.767325 eV Total energy + Delta-G solvation = -4043.852640 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.86619 -40.80838 -39.94654 -38.70824 -37.21053 -35.70637 -33.84602 -32.57345 -31.28991 -30.75676 -30.30602 -28.24886 -27.76039 -27.53714 -25.60271 -24.81284 -23.15445 -22.30507 -21.82293 -20.39261 -19.73949 -18.87083 -18.60846 -17.81306 -17.40989 -17.01278 -16.88206 -16.62956 -16.42436 -15.86437 -15.84766 -15.58349 -15.52382 -15.11799 -14.53128 -14.30868 -14.22821 -14.03011 -13.74128 -13.69171 -13.42918 -13.32498 -13.21514 -13.06019 -12.81868 -12.75509 -12.50080 -12.44667 -12.10297 -12.03693 -11.97089 -11.88069 -11.67172 -11.51674 -11.35459 -10.74249 -10.62560 -10.24284 -9.94883 -8.88180 -8.79373 -7.77954 -5.21637 -0.27004 0.35134 1.44364 1.47958 1.54501 1.88422 2.14557 2.30913 2.47151 2.49258 2.77229 3.30776 3.53025 3.63972 3.71688 3.72641 4.03620 4.04485 4.07247 4.18775 4.21368 4.35705 4.40512 4.44814 4.46742 4.63944 4.65713 4.66835 4.69134 4.75962 4.81785 4.82154 4.86669 4.93244 5.02747 5.09049 5.12040 5.16786 5.34320 5.39597 5.42561 5.61929 5.71110 5.80758 6.31148 6.33285 6.47779 6.65595 7.11504 7.33337 7.77478 8.41855 9.23359 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011440 B = 0.003405 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2446.949063 B = 8221.980155 C = 8796.731562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.334 6.334 3 C 0.077 3.923 4 C -0.129 4.129 5 C -0.174 4.174 6 C 0.132 3.868 7 O -0.316 6.316 8 C 0.013 3.987 9 C -0.156 4.156 10 C 0.556 3.444 11 O -0.550 6.550 12 N -0.702 5.702 13 C 0.170 3.830 14 C -0.138 4.138 15 C -0.127 4.127 16 C 0.156 3.844 17 N -0.623 5.623 18 C -0.246 4.246 19 H 0.068 0.932 20 C -0.060 4.060 21 N -0.944 5.944 22 Si 0.979 3.021 23 H -0.284 1.284 24 H -0.286 1.286 25 H -0.277 1.277 26 C 0.138 3.862 27 C -0.089 4.089 28 H 0.071 0.929 29 H 0.116 0.884 30 H 0.065 0.935 31 H 0.172 0.828 32 H 0.170 0.830 33 H 0.106 0.894 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.405 0.595 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.054 0.946 40 H 0.086 0.914 41 H 0.100 0.900 42 H 0.078 0.922 43 H -0.010 1.010 44 H 0.249 0.751 45 H 0.006 0.994 46 H 0.022 0.978 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.296 4.792 -13.713 25.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.248 6.248 3 C 0.032 3.968 4 C -0.148 4.148 5 C -0.192 4.192 6 C 0.085 3.915 7 O -0.228 6.228 8 C -0.081 4.081 9 C -0.160 4.160 10 C 0.344 3.656 11 O -0.428 6.428 12 N -0.355 5.355 13 C 0.083 3.917 14 C -0.196 4.196 15 C -0.165 4.165 16 C 0.031 3.969 17 N -0.349 5.349 18 C -0.375 4.375 19 H 0.086 0.914 20 C -0.252 4.252 21 N -0.593 5.593 22 Si 0.807 3.193 23 H -0.210 1.210 24 H -0.212 1.212 25 H -0.203 1.203 26 C 0.012 3.988 27 C -0.109 4.109 28 H 0.090 0.910 29 H 0.134 0.866 30 H 0.084 0.916 31 H 0.189 0.811 32 H 0.187 0.813 33 H 0.124 0.876 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.242 0.758 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.073 0.927 40 H 0.105 0.895 41 H 0.118 0.882 42 H 0.096 0.904 43 H 0.008 0.992 44 H 0.059 0.941 45 H 0.024 0.976 46 H 0.040 0.960 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -20.531 5.323 -13.537 25.161 hybrid contribution -0.072 -0.007 1.338 1.340 sum -20.603 5.316 -12.199 24.527 Atomic orbital electron populations 1.23386 0.76262 1.05695 1.02489 1.86100 1.23570 1.25890 1.89255 1.18757 0.91555 0.85581 1.00911 1.21578 1.01872 0.90465 1.00851 1.21336 0.91553 1.00290 1.06014 1.19197 0.91690 0.85076 0.95579 1.86368 1.36453 1.12604 1.87376 1.23412 0.96030 0.86083 1.02620 1.19173 0.92193 0.92336 1.12309 1.18248 0.86999 0.84128 0.76186 1.90751 1.73388 1.28568 1.50143 1.45832 1.06117 1.08768 1.74769 1.21225 0.79215 0.96854 0.94363 1.21930 1.01410 1.00808 0.95478 1.23257 1.01580 0.94239 0.97472 1.21756 0.97896 0.88184 0.89033 1.44781 1.74436 1.02444 1.13251 1.19349 1.34485 0.92908 0.90728 0.91368 1.25556 1.02399 0.95019 1.02272 1.70004 1.54913 0.97718 1.36658 0.85147 0.78311 0.76562 0.79262 1.20999 1.21169 1.20277 1.21643 0.95858 0.91450 0.89887 1.20453 0.92962 0.96310 1.01133 0.91012 0.86619 0.91600 0.81104 0.81303 0.87569 0.90559 0.91299 0.75759 0.90967 0.90380 0.92663 0.89534 0.88154 0.90380 0.99228 0.94130 0.97640 0.96022 0.83861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.27 16 2 O -0.33 -6.66 10.49 -93.42 -0.98 -7.64 16 3 C 0.08 1.70 6.68 22.44 0.15 1.85 16 4 C -0.13 -2.18 9.02 22.40 0.20 -1.98 16 5 C -0.17 -3.30 9.02 22.33 0.20 -3.10 16 6 C 0.13 3.73 6.70 22.82 0.15 3.89 16 7 O -0.32 -9.57 8.56 -69.58 -0.60 -10.17 16 8 C 0.01 0.22 9.81 113.37 1.11 1.34 16 9 C -0.16 -4.94 5.88 -20.02 -0.12 -5.05 16 10 C 0.56 21.07 6.99 86.70 0.61 21.67 16 11 O -0.55 -24.34 12.11 16.98 0.21 -24.13 16 12 N -0.70 -24.76 5.10 -420.29 -2.14 -26.90 16 13 C 0.17 6.47 0.81 4.88 0.00 6.48 16 14 C -0.14 -4.49 8.42 71.98 0.61 -3.89 16 15 C -0.13 -4.69 6.10 32.08 0.20 -4.49 16 16 C 0.16 7.83 5.87 86.86 0.51 8.34 16 17 N -0.62 -34.77 3.39 -691.97 -2.35 -37.12 16 18 C -0.25 -14.88 10.27 84.04 0.86 -14.01 16 19 H 0.07 4.09 7.83 -2.91 -0.02 4.06 16 20 C -0.06 -3.52 5.49 84.86 0.47 -3.05 16 21 N -0.94 -57.08 10.09 21.65 0.22 -56.86 16 22 Si 0.98 47.58 29.55 68.60 2.03 49.61 16 23 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 24 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 25 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 26 C 0.14 6.76 6.12 86.73 0.53 7.29 16 27 C -0.09 -2.37 9.47 22.63 0.21 -2.16 16 28 H 0.07 0.46 7.65 -2.39 -0.02 0.45 16 29 H 0.12 0.78 8.14 -2.38 -0.02 0.76 16 30 H 0.07 0.51 7.65 -2.39 -0.02 0.50 16 31 H 0.17 1.52 6.27 -2.91 -0.02 1.50 16 32 H 0.17 1.98 6.29 -2.91 -0.02 1.97 16 33 H 0.11 1.68 8.14 -2.38 -0.02 1.66 16 34 H 0.08 0.94 7.65 -2.38 -0.02 0.92 16 35 H 0.07 0.96 7.67 -2.39 -0.02 0.94 16 36 H 0.41 12.32 6.50 -92.71 -0.60 11.72 16 37 H 0.07 2.21 8.13 -2.39 -0.02 2.19 16 38 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.05 2.01 6.46 -2.39 -0.02 1.99 16 40 H 0.09 3.06 8.04 -2.39 -0.02 3.04 16 41 H 0.10 2.97 8.04 -2.39 -0.02 2.95 16 42 H 0.08 4.40 5.87 -2.39 -0.01 4.39 16 43 H -0.01 -0.55 8.14 -2.39 -0.02 -0.56 16 44 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 45 H 0.01 0.31 6.47 -2.39 -0.02 0.29 16 46 H 0.02 1.08 7.82 -2.39 -0.02 1.06 16 47 H 0.14 3.55 6.40 -2.91 -0.02 3.53 16 Total: -1.00 -81.24 372.73 3.59 -77.65 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: 0.40 Total: 21.19 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: 6.81 Total: 14.38 kcal Atomic # 7 Polarization: -116.61 SS G_CDS: -4.27 Total: -120.88 kcal Atomic # 8 Polarization: -40.58 SS G_CDS: -1.37 Total: -41.95 kcal Atomic # 14 Polarization: 47.58 SS G_CDS: 2.03 Total: 49.61 kcal Total: -81.24 3.59 -77.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046826408.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.512 kcal (2) G-P(sol) polarization free energy of solvation -81.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds