Wall clock time and date at job start Tue Mar 31 2020 18:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34519 * 125.78700 * 2 1 4 4 C 1.41376 * 106.83832 * 180.02562 * 3 2 1 5 5 C 1.34519 * 106.84375 * 359.97438 * 4 3 2 6 6 C 1.50699 * 125.79010 * 180.02562 * 5 4 3 7 7 H 1.09004 * 109.47321 * 0.02562 * 6 5 4 8 8 C 1.52997 * 109.47157 * 240.00205 * 6 5 4 9 9 C 1.50696 * 109.47229 * 120.00175 * 6 5 4 10 10 O 1.21282 * 119.99884 * 15.24020 * 9 6 5 11 11 N 1.34775 * 120.00287 * 195.24254 * 9 6 5 12 12 C 1.47130 * 121.06491 * 174.31387 * 11 9 6 13 13 C 1.53229 * 108.72775 * 232.27769 * 12 11 9 14 14 O 1.43121 * 109.34892 * 305.79906 * 13 12 11 15 15 C 1.42370 * 113.99574 * 59.78442 * 14 13 12 16 16 C 1.52925 * 114.29801 * 74.94864 * 15 14 13 17 17 N 1.47175 * 87.83593 * 88.28115 * 16 15 14 18 18 C 1.36933 * 135.99590 * 206.64348 * 17 16 15 19 19 H 1.08004 * 119.99735 * 7.23944 * 18 17 16 20 20 C 1.38812 * 120.00223 * 187.23640 * 18 17 16 21 21 N 1.31618 * 120.00008 * 6.97309 * 20 18 17 22 22 Si 1.86802 * 119.99972 * 186.97171 * 20 18 17 23 23 H 1.48495 * 109.47206 * 265.01964 * 22 20 18 24 24 H 1.48499 * 109.47284 * 25.02072 * 22 20 18 25 25 H 1.48508 * 109.46734 * 145.02098 * 22 20 18 26 26 C 1.47178 * 88.00453 * 26.89936 * 17 16 15 27 27 C 1.47365 * 121.05902 * 354.29290 * 11 9 6 28 28 O 1.34301 * 108.41735 * 0.26378 * 5 4 3 29 29 H 1.09000 * 109.47419 * 89.99843 * 1 2 3 30 30 H 1.09003 * 109.47104 * 209.99870 * 1 2 3 31 31 H 1.08998 * 109.47303 * 329.99757 * 1 2 3 32 32 H 1.07998 * 126.57774 * 0.02562 * 3 2 1 33 33 H 1.07999 * 126.58098 * 179.97438 * 4 3 2 34 34 H 1.09007 * 109.47439 * 63.87693 * 8 6 5 35 35 H 1.08999 * 109.47655 * 183.88000 * 8 6 5 36 36 H 1.08998 * 109.47018 * 303.88162 * 8 6 5 37 37 H 1.08993 * 109.59451 * 112.50035 * 12 11 9 38 38 H 1.08997 * 109.71562 * 352.11897 * 12 11 9 39 39 H 1.08996 * 109.48847 * 185.83887 * 13 12 11 40 40 H 1.08998 * 109.49078 * 65.76196 * 13 12 11 41 41 H 1.08997 * 113.49243 * 333.54186 * 16 15 14 42 42 H 1.08999 * 113.54679 * 203.02742 * 16 15 14 43 43 H 0.96993 * 120.00420 * 179.97438 * 21 20 18 44 44 H 1.08995 * 113.48874 * 87.84366 * 26 17 16 45 45 H 1.09005 * 113.48721 * 218.34847 * 26 17 16 46 46 H 1.09000 * 109.74407 * 12.13490 * 27 11 9 47 47 H 1.08999 * 109.74485 * 251.41309 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6308 0.6321 -0.0006 5 6 3.5814 -0.7122 -0.0004 6 6 4.7706 -1.6378 -0.0003 7 1 5.6886 -1.0500 0.0000 8 6 4.7300 -2.5204 -1.2493 9 6 4.7307 -2.5067 1.2303 10 8 3.7101 -2.5915 1.8800 11 7 5.8292 -3.1896 1.6089 12 6 5.8558 -3.9454 2.8710 13 6 7.0889 -3.5185 3.6742 14 8 8.2587 -3.6707 2.8638 15 6 8.2400 -2.8969 1.6689 16 6 8.4908 -1.4035 1.8824 17 7 9.9299 -1.6837 1.7536 18 6 11.0891 -1.1108 2.2043 19 1 11.0490 -0.2958 2.9120 20 6 12.3156 -1.5774 1.7519 21 7 12.3642 -2.4743 0.7898 22 14 13.8971 -0.9325 2.5083 23 1 14.4188 0.1878 1.6849 24 1 13.6258 -0.4495 3.8861 25 1 14.9040 -2.0231 2.5553 26 6 9.5768 -2.8459 0.9225 27 6 7.0419 -3.2036 0.7718 28 8 2.2924 -1.0894 -0.0055 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5139 32 1 1.9664 2.1204 0.0004 33 1 4.5211 1.2434 -0.0012 34 1 4.8282 -1.8970 -2.1382 35 1 5.5511 -3.2363 -1.2153 36 1 3.7817 -3.0565 -1.2847 37 1 5.9105 -5.0127 2.6569 38 1 4.9541 -3.7335 3.4455 39 1 7.1783 -4.1433 4.5628 40 1 6.9858 -2.4750 3.9717 41 1 8.2036 -1.0520 2.8734 42 1 8.0968 -0.7770 1.0822 43 1 13.2212 -2.8002 0.4733 44 1 9.4745 -2.6078 -0.1362 45 1 10.2093 -3.7156 1.1007 46 1 6.9609 -2.4447 -0.0064 47 1 7.1642 -4.1866 0.3172 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053460494.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:35 Heat of formation + Delta-G solvation = 9.466813 kcal Electronic energy + Delta-G solvation = -29943.478328 eV Core-core repulsion = 25902.861017 eV Total energy + Delta-G solvation = -4040.617311 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.66620 -40.59320 -38.96083 -36.29757 -34.89984 -34.17426 -33.18652 -32.30315 -31.32215 -30.04897 -28.01691 -26.69470 -26.10862 -25.08395 -24.35028 -22.98972 -21.93288 -21.75989 -20.35454 -19.32162 -18.92086 -17.32196 -17.07779 -16.69510 -16.15162 -16.12962 -15.38828 -15.37530 -14.87321 -14.67388 -14.43036 -14.25262 -14.03955 -13.64916 -13.46810 -13.37572 -13.28988 -13.11620 -12.83623 -12.81085 -12.45296 -12.31774 -12.19995 -11.97170 -11.80210 -11.63295 -11.48910 -11.20599 -10.91907 -10.83691 -10.79037 -10.20801 -10.09705 -9.90328 -9.73992 -9.63539 -9.19935 -8.85330 -8.38200 -8.32171 -6.95261 -5.83576 -3.13841 1.63682 2.46958 2.57133 2.80995 2.94433 3.37420 3.43003 3.45220 3.99720 4.30975 4.33891 4.40064 4.71114 4.81156 4.85266 4.89958 4.98256 5.01831 5.07619 5.18046 5.21040 5.22965 5.24396 5.37991 5.43084 5.47582 5.49923 5.53065 5.57659 5.67195 5.76379 5.82366 5.86891 5.94680 5.95269 6.08425 6.21826 6.34955 6.38734 6.43145 6.48205 6.84712 7.04635 7.16186 7.30746 7.42442 7.74127 7.91269 8.08583 8.97943 9.64865 10.55201 11.35613 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.018127 B = 0.002947 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.279792 B = 9500.473420 C =10194.883194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.016 4.016 3 C -0.214 4.214 4 C -0.203 4.203 5 C 0.012 3.988 6 C -0.030 4.030 7 H 0.126 0.874 8 C -0.147 4.147 9 C 0.523 3.477 10 O -0.533 6.533 11 N -0.609 5.609 12 C 0.080 3.920 13 C 0.046 3.954 14 O -0.332 6.332 15 C 0.044 3.956 16 C 0.098 3.902 17 N -0.597 5.597 18 C -0.217 4.217 19 H 0.081 0.919 20 C -0.005 4.005 21 N -0.919 5.919 22 Si 0.913 3.087 23 H -0.289 1.289 24 H -0.280 1.280 25 H -0.289 1.289 26 C 0.181 3.819 27 C 0.092 3.908 28 O -0.155 6.155 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.146 0.854 33 H 0.149 0.851 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.096 0.904 39 H 0.103 0.897 40 H 0.053 0.947 41 H 0.042 0.958 42 H 0.037 0.963 43 H 0.255 0.745 44 H 0.048 0.952 45 H 0.072 0.928 46 H 0.096 0.904 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.309 0.662 -3.564 20.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.066 4.066 3 C -0.233 4.233 4 C -0.222 4.222 5 C -0.039 4.039 6 C -0.052 4.052 7 H 0.143 0.857 8 C -0.205 4.205 9 C 0.310 3.690 10 O -0.409 6.409 11 N -0.343 5.343 12 C -0.042 4.042 13 C -0.032 4.032 14 O -0.250 6.250 15 C 0.002 3.998 16 C -0.029 4.029 17 N -0.322 5.322 18 C -0.345 4.345 19 H 0.099 0.901 20 C -0.202 4.202 21 N -0.565 5.565 22 Si 0.743 3.257 23 H -0.216 1.216 24 H -0.205 1.205 25 H -0.215 1.215 26 C 0.054 3.946 27 C -0.031 4.031 28 O -0.051 6.051 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.105 0.895 32 H 0.164 0.836 33 H 0.167 0.833 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.115 0.885 39 H 0.121 0.879 40 H 0.072 0.928 41 H 0.061 0.939 42 H 0.054 0.946 43 H 0.065 0.935 44 H 0.066 0.934 45 H 0.090 0.910 46 H 0.114 0.886 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -20.421 0.240 -3.116 20.659 hybrid contribution 0.893 0.834 0.267 1.251 sum -19.528 1.075 -2.849 19.764 Atomic orbital electron populations 1.20273 0.85352 1.03983 1.03240 1.22429 0.94010 0.84348 1.05843 1.21500 0.92600 0.99263 1.09958 1.21562 0.98456 0.93492 1.08709 1.21482 0.82733 0.93342 1.06386 1.19917 0.94494 0.95379 0.95369 0.85675 1.21876 1.03688 0.99621 0.95294 1.20337 0.82869 0.79811 0.85939 1.90707 1.30503 1.64284 1.55436 1.48168 1.13587 1.50157 1.22399 1.22277 1.00401 0.96100 0.85466 1.22909 0.84996 1.01442 0.93808 1.88015 1.38425 1.65778 1.32767 1.23404 0.96146 0.93205 0.87047 1.22896 0.87857 0.93302 0.98836 1.45440 0.99303 1.29491 1.57974 1.18886 0.81599 1.14484 1.19481 0.90119 1.24800 0.97497 0.99728 0.98134 1.69814 1.24433 1.33315 1.28977 0.86088 0.83105 0.77796 0.78684 1.21594 1.20517 1.21506 1.21963 0.87064 0.92820 0.92708 1.22459 0.83502 1.03275 0.93872 1.83983 1.15910 1.34564 1.70631 0.90295 0.90580 0.89507 0.83627 0.83346 0.90574 0.90587 0.91433 0.90689 0.88533 0.87946 0.92824 0.93940 0.94557 0.93517 0.93416 0.90954 0.88566 0.90045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.55 10.42 36.01 0.38 -0.18 16 2 C -0.02 -0.19 7.32 -35.62 -0.26 -0.45 16 3 C -0.21 -2.49 10.81 -39.70 -0.43 -2.92 16 4 C -0.20 -2.55 10.78 -39.70 -0.43 -2.98 16 5 C 0.01 0.16 5.35 -35.62 -0.19 -0.03 16 6 C -0.03 -0.37 2.27 -92.93 -0.21 -0.58 16 7 H 0.13 1.35 7.01 -51.93 -0.36 0.99 16 8 C -0.15 -1.45 8.83 37.16 0.33 -1.13 16 9 C 0.52 7.65 6.93 -10.99 -0.08 7.58 16 10 O -0.53 -9.50 15.22 -6.28 -0.10 -9.60 16 11 N -0.61 -8.41 3.03 -172.48 -0.52 -8.93 16 12 C 0.08 1.06 6.57 -3.58 -0.02 1.03 16 13 C 0.05 0.67 6.90 37.28 0.26 0.93 16 14 O -0.33 -6.21 10.55 -35.23 -0.37 -6.58 16 15 C 0.04 0.79 1.29 -90.67 -0.12 0.67 16 16 C 0.10 1.95 7.90 -8.18 -0.06 1.88 16 17 N -0.60 -14.99 3.77 -184.55 -0.69 -15.68 16 18 C -0.22 -6.05 10.73 -15.06 -0.16 -6.21 16 19 H 0.08 2.18 7.84 -52.48 -0.41 1.77 16 20 C 0.00 -0.13 5.49 -17.43 -0.10 -0.22 16 21 N -0.92 -26.73 11.86 55.49 0.66 -26.08 16 22 Si 0.91 21.96 29.56 -169.99 -5.02 16.93 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 26 C 0.18 4.01 6.64 -8.04 -0.05 3.95 16 27 C 0.09 1.25 4.60 -3.68 -0.02 1.24 16 28 O -0.16 -2.25 10.13 -6.11 -0.06 -2.31 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 33 H 0.15 1.60 8.06 -52.49 -0.42 1.18 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.67 6.31 -51.93 -0.33 0.35 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.10 1.28 7.11 -51.93 -0.37 0.91 16 39 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.05 0.81 7.30 -51.93 -0.38 0.43 16 41 H 0.04 0.86 7.36 -51.93 -0.38 0.47 16 42 H 0.04 0.67 7.93 -51.93 -0.41 0.26 16 43 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 44 H 0.05 1.01 8.09 -51.93 -0.42 0.59 16 45 H 0.07 1.82 7.65 -51.93 -0.40 1.42 16 46 H 0.10 1.13 4.88 -51.93 -0.25 0.88 16 47 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 379.31 15.07 5.72 5.72 Total: -1.00 -34.88 379.31 -8.64 -43.52 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -7.08 Total: 0.43 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: -1.17 Total: 2.58 kcal Atomic # 7 Polarization: -50.13 SS G_CDS: -0.56 Total: -50.69 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: -0.53 Total: -18.49 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.88 -8.64 -43.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053460494.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.990 kcal (2) G-P(sol) polarization free energy of solvation -34.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds