Wall clock time and date at job start Tue Mar 31 2020 18:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34519 * 125.78700 * 2 1 4 4 C 1.41376 * 106.83832 * 180.02562 * 3 2 1 5 5 C 1.34519 * 106.84375 * 359.97438 * 4 3 2 6 6 C 1.50699 * 125.79010 * 180.02562 * 5 4 3 7 7 H 1.09004 * 109.47321 * 0.02562 * 6 5 4 8 8 C 1.52997 * 109.47157 * 240.00205 * 6 5 4 9 9 C 1.50696 * 109.47229 * 120.00175 * 6 5 4 10 10 O 1.21282 * 119.99884 * 15.24020 * 9 6 5 11 11 N 1.34775 * 120.00287 * 195.24254 * 9 6 5 12 12 C 1.47130 * 121.06491 * 174.31387 * 11 9 6 13 13 C 1.53229 * 108.72775 * 232.27769 * 12 11 9 14 14 O 1.43121 * 109.34892 * 305.79906 * 13 12 11 15 15 C 1.42370 * 113.99574 * 59.78442 * 14 13 12 16 16 C 1.52925 * 114.29801 * 74.94864 * 15 14 13 17 17 N 1.47175 * 87.83593 * 88.28115 * 16 15 14 18 18 C 1.36933 * 135.99590 * 206.64348 * 17 16 15 19 19 H 1.08004 * 119.99735 * 7.23944 * 18 17 16 20 20 C 1.38812 * 120.00223 * 187.23640 * 18 17 16 21 21 N 1.31618 * 120.00008 * 6.97309 * 20 18 17 22 22 Si 1.86802 * 119.99972 * 186.97171 * 20 18 17 23 23 H 1.48495 * 109.47206 * 265.01964 * 22 20 18 24 24 H 1.48499 * 109.47284 * 25.02072 * 22 20 18 25 25 H 1.48508 * 109.46734 * 145.02098 * 22 20 18 26 26 C 1.47178 * 88.00453 * 26.89936 * 17 16 15 27 27 C 1.47365 * 121.05902 * 354.29290 * 11 9 6 28 28 O 1.34301 * 108.41735 * 0.26378 * 5 4 3 29 29 H 1.09000 * 109.47419 * 89.99843 * 1 2 3 30 30 H 1.09003 * 109.47104 * 209.99870 * 1 2 3 31 31 H 1.08998 * 109.47303 * 329.99757 * 1 2 3 32 32 H 1.07998 * 126.57774 * 0.02562 * 3 2 1 33 33 H 1.07999 * 126.58098 * 179.97438 * 4 3 2 34 34 H 1.09007 * 109.47439 * 63.87693 * 8 6 5 35 35 H 1.08999 * 109.47655 * 183.88000 * 8 6 5 36 36 H 1.08998 * 109.47018 * 303.88162 * 8 6 5 37 37 H 1.08993 * 109.59451 * 112.50035 * 12 11 9 38 38 H 1.08997 * 109.71562 * 352.11897 * 12 11 9 39 39 H 1.08996 * 109.48847 * 185.83887 * 13 12 11 40 40 H 1.08998 * 109.49078 * 65.76196 * 13 12 11 41 41 H 1.08997 * 113.49243 * 333.54186 * 16 15 14 42 42 H 1.08999 * 113.54679 * 203.02742 * 16 15 14 43 43 H 0.96993 * 120.00420 * 179.97438 * 21 20 18 44 44 H 1.08995 * 113.48874 * 87.84366 * 26 17 16 45 45 H 1.09005 * 113.48721 * 218.34847 * 26 17 16 46 46 H 1.09000 * 109.74407 * 12.13490 * 27 11 9 47 47 H 1.08999 * 109.74485 * 251.41309 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6308 0.6321 -0.0006 5 6 3.5814 -0.7122 -0.0004 6 6 4.7706 -1.6378 -0.0003 7 1 5.6886 -1.0500 0.0000 8 6 4.7300 -2.5204 -1.2493 9 6 4.7307 -2.5067 1.2303 10 8 3.7101 -2.5915 1.8800 11 7 5.8292 -3.1896 1.6089 12 6 5.8558 -3.9454 2.8710 13 6 7.0889 -3.5185 3.6742 14 8 8.2587 -3.6707 2.8638 15 6 8.2400 -2.8969 1.6689 16 6 8.4908 -1.4035 1.8824 17 7 9.9299 -1.6837 1.7536 18 6 11.0891 -1.1108 2.2043 19 1 11.0490 -0.2958 2.9120 20 6 12.3156 -1.5774 1.7519 21 7 12.3642 -2.4743 0.7898 22 14 13.8971 -0.9325 2.5083 23 1 14.4188 0.1878 1.6849 24 1 13.6258 -0.4495 3.8861 25 1 14.9040 -2.0231 2.5553 26 6 9.5768 -2.8459 0.9225 27 6 7.0419 -3.2036 0.7718 28 8 2.2924 -1.0894 -0.0055 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5139 32 1 1.9664 2.1204 0.0004 33 1 4.5211 1.2434 -0.0012 34 1 4.8282 -1.8970 -2.1382 35 1 5.5511 -3.2363 -1.2153 36 1 3.7817 -3.0565 -1.2847 37 1 5.9105 -5.0127 2.6569 38 1 4.9541 -3.7335 3.4455 39 1 7.1783 -4.1433 4.5628 40 1 6.9858 -2.4750 3.9717 41 1 8.2036 -1.0520 2.8734 42 1 8.0968 -0.7770 1.0822 43 1 13.2212 -2.8002 0.4733 44 1 9.4745 -2.6078 -0.1362 45 1 10.2093 -3.7156 1.1007 46 1 6.9609 -2.4447 -0.0064 47 1 7.1642 -4.1866 0.3172 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053460494.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:34 Heat of formation + Delta-G solvation = -12.747672 kcal Electronic energy + Delta-G solvation = -29944.441621 eV Core-core repulsion = 25902.861017 eV Total energy + Delta-G solvation = -4041.580604 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.57945 -41.87095 -40.31008 -37.79160 -36.07039 -35.20279 -34.26019 -34.06665 -32.16228 -31.38871 -29.49489 -27.78119 -27.38458 -26.68727 -25.41903 -24.39311 -23.32081 -22.71377 -21.37371 -20.62759 -20.11688 -18.81875 -18.35326 -18.03297 -17.33584 -17.07039 -17.03769 -16.48833 -16.36822 -15.93364 -15.76377 -15.37323 -15.29923 -15.02462 -14.88210 -14.44151 -14.13801 -14.06545 -13.94763 -13.72457 -13.70065 -13.39255 -13.29167 -13.09636 -12.89167 -12.84579 -12.76409 -12.63908 -12.49408 -12.46331 -12.13259 -11.95897 -11.69780 -11.43478 -10.95090 -10.88406 -10.72922 -10.71222 -9.61283 -9.21386 -8.92138 -7.93457 -5.23587 0.72124 1.42387 1.46073 1.47737 1.56686 1.60735 1.83066 2.01566 2.46620 2.65398 3.26459 3.30842 3.35553 3.46248 3.59949 3.77627 3.87472 3.91003 3.99051 4.12681 4.15266 4.17951 4.25285 4.43496 4.52509 4.56581 4.62404 4.67460 4.69925 4.71578 4.75240 4.77800 4.83373 4.86419 4.90681 4.92533 5.05902 5.15958 5.16937 5.21245 5.25058 5.31503 5.47305 5.65295 5.90083 6.19029 6.26898 6.36519 6.90176 6.97189 7.58392 8.57347 9.25607 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.018127 B = 0.002947 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.279792 B = 9500.473420 C =10194.883194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.028 4.028 3 C -0.226 4.226 4 C -0.211 4.211 5 C -0.013 4.013 6 C -0.029 4.029 7 H 0.140 0.860 8 C -0.143 4.143 9 C 0.523 3.477 10 O -0.569 6.569 11 N -0.607 5.607 12 C 0.083 3.917 13 C 0.047 3.953 14 O -0.363 6.363 15 C 0.069 3.931 16 C 0.098 3.902 17 N -0.632 5.632 18 C -0.229 4.229 19 H 0.079 0.921 20 C -0.061 4.061 21 N -0.948 5.948 22 Si 0.976 3.024 23 H -0.284 1.284 24 H -0.272 1.272 25 H -0.293 1.293 26 C 0.178 3.822 27 C 0.102 3.898 28 O -0.180 6.180 29 H 0.097 0.903 30 H 0.073 0.927 31 H 0.107 0.893 32 H 0.169 0.831 33 H 0.162 0.838 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.056 0.944 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.126 0.874 40 H 0.044 0.956 41 H 0.036 0.964 42 H 0.063 0.937 43 H 0.251 0.749 44 H 0.058 0.942 45 H 0.033 0.967 46 H 0.120 0.880 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.608 1.295 -4.021 22.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.078 4.078 3 C -0.244 4.244 4 C -0.231 4.231 5 C -0.063 4.063 6 C -0.050 4.050 7 H 0.158 0.842 8 C -0.200 4.200 9 C 0.312 3.688 10 O -0.448 6.448 11 N -0.340 5.340 12 C -0.039 4.039 13 C -0.030 4.030 14 O -0.281 6.281 15 C 0.027 3.973 16 C -0.028 4.028 17 N -0.358 5.358 18 C -0.357 4.357 19 H 0.097 0.903 20 C -0.254 4.254 21 N -0.597 5.597 22 Si 0.804 3.196 23 H -0.210 1.210 24 H -0.197 1.197 25 H -0.219 1.219 26 C 0.052 3.948 27 C -0.021 4.021 28 O -0.077 6.077 29 H 0.115 0.885 30 H 0.092 0.908 31 H 0.125 0.875 32 H 0.186 0.814 33 H 0.180 0.820 34 H 0.111 0.889 35 H 0.107 0.893 36 H 0.075 0.925 37 H 0.109 0.891 38 H 0.115 0.885 39 H 0.143 0.857 40 H 0.062 0.938 41 H 0.055 0.945 42 H 0.081 0.919 43 H 0.059 0.941 44 H 0.076 0.924 45 H 0.051 0.949 46 H 0.138 0.862 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -21.749 0.883 -3.568 22.057 hybrid contribution 1.206 0.663 0.473 1.456 sum -20.542 1.545 -3.094 20.832 Atomic orbital electron populations 1.20462 0.82755 1.04874 1.04676 1.23255 0.95671 0.83955 1.04931 1.21858 0.92290 1.00395 1.09906 1.21891 0.99506 0.93501 1.08154 1.21795 0.82920 0.94033 1.07571 1.20014 0.94725 0.95296 0.94924 0.84209 1.21888 1.03624 0.99680 0.94824 1.20775 0.82290 0.79468 0.86261 1.90690 1.31824 1.65456 1.56786 1.48199 1.13369 1.49917 1.22537 1.22278 0.99526 0.96886 0.85227 1.23085 0.84157 1.01511 0.94208 1.87964 1.40777 1.65856 1.33537 1.23007 0.95689 0.91584 0.87060 1.23088 0.85083 0.95316 0.99275 1.45753 1.00603 1.30782 1.58634 1.19205 0.83173 1.14137 1.19230 0.90330 1.25577 1.00406 1.00481 0.98984 1.69966 1.24623 1.34722 1.30355 0.85105 0.79238 0.77040 0.78191 1.21034 1.19707 1.21924 1.21951 0.88778 0.90570 0.93467 1.22421 0.81323 1.05298 0.93050 1.83969 1.16589 1.35921 1.71197 0.88494 0.90783 0.87466 0.81396 0.82029 0.88922 0.89298 0.92496 0.89132 0.88493 0.85660 0.93797 0.94546 0.91945 0.94058 0.92410 0.94851 0.86218 0.87999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.97 10.42 71.24 0.74 -0.23 16 2 C -0.03 -0.63 7.32 24.83 0.18 -0.45 16 3 C -0.23 -4.89 10.81 22.19 0.24 -4.65 16 4 C -0.21 -5.02 10.78 22.19 0.24 -4.78 16 5 C -0.01 -0.33 5.35 24.83 0.13 -0.20 16 6 C -0.03 -0.64 2.27 -12.29 -0.03 -0.67 16 7 H 0.14 2.63 7.01 -2.38 -0.02 2.62 16 8 C -0.14 -2.49 8.83 71.98 0.64 -1.85 16 9 C 0.52 14.47 6.93 87.66 0.61 15.08 16 10 O -0.57 -19.88 15.22 8.28 0.13 -19.76 16 11 N -0.61 -15.47 3.03 -817.99 -2.48 -17.95 16 12 C 0.08 2.04 6.57 86.34 0.57 2.61 16 13 C 0.05 1.31 6.90 72.06 0.50 1.80 16 14 O -0.36 -13.29 10.55 -148.98 -1.57 -14.86 16 15 C 0.07 2.37 1.29 -10.82 -0.01 2.36 16 16 C 0.10 3.79 7.90 83.33 0.66 4.45 16 17 N -0.63 -31.85 3.77 -738.68 -2.78 -34.63 16 18 C -0.23 -12.89 10.73 84.03 0.90 -11.99 16 19 H 0.08 4.29 7.84 -2.91 -0.02 4.27 16 20 C -0.06 -3.45 5.49 84.86 0.47 -2.98 16 21 N -0.95 -56.24 11.86 21.65 0.26 -55.98 16 22 Si 0.98 45.61 29.56 68.60 2.03 47.64 16 23 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 24 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 25 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 26 C 0.18 7.91 6.64 83.42 0.55 8.47 16 27 C 0.10 2.51 4.60 86.14 0.40 2.90 16 28 O -0.18 -5.11 10.13 8.88 0.09 -5.02 16 29 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.07 1.03 8.14 -2.39 -0.02 1.02 16 31 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.17 2.68 8.06 -2.91 -0.02 2.66 16 33 H 0.16 3.21 8.06 -2.91 -0.02 3.18 16 34 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 35 H 0.09 1.29 6.31 -2.39 -0.02 1.28 16 36 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.10 2.43 7.11 -2.39 -0.02 2.41 16 39 H 0.13 2.83 8.14 -2.39 -0.02 2.81 16 40 H 0.04 1.29 7.30 -2.39 -0.02 1.28 16 41 H 0.04 1.44 7.36 -2.39 -0.02 1.42 16 42 H 0.06 2.13 7.93 -2.39 -0.02 2.11 16 43 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 44 H 0.06 2.42 8.09 -2.39 -0.02 2.40 16 45 H 0.03 1.72 7.65 -2.38 -0.02 1.70 16 46 H 0.12 2.39 4.88 -2.39 -0.01 2.38 16 47 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -77.22 379.31 3.42 -73.80 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 0.97 Total: 16.88 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: 6.78 Total: 9.88 kcal Atomic # 7 Polarization: -103.56 SS G_CDS: -5.00 Total: -108.56 kcal Atomic # 8 Polarization: -38.28 SS G_CDS: -1.36 Total: -39.64 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -77.22 3.42 -73.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053460494.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.052 kcal (2) G-P(sol) polarization free energy of solvation -77.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds