Wall clock time and date at job start Tue Mar 31 2020 17:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34512 * 125.78910 * 2 1 4 4 C 1.41376 * 106.84375 * 180.02562 * 3 2 1 5 5 C 1.34523 * 106.84082 * 359.97438 * 4 3 2 6 6 C 1.50700 * 125.79065 * 180.02562 * 5 4 3 7 7 C 1.52996 * 109.47067 * 89.99922 * 6 5 4 8 8 C 1.50710 * 109.46859 * 179.97438 * 7 6 5 9 9 O 1.21280 * 119.99802 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99627 * 179.97438 * 8 7 6 11 11 C 1.47131 * 121.06297 * 359.97438 * 10 8 7 12 12 C 1.53223 * 108.72910 * 127.72396 * 11 10 8 13 13 O 1.43115 * 109.35545 * 54.19200 * 12 11 10 14 14 C 1.42357 * 113.99425 * 300.22452 * 13 12 11 15 15 C 1.52923 * 114.29526 * 285.04832 * 14 13 12 16 16 N 1.47161 * 87.84547 * 271.71962 * 15 14 13 17 17 C 1.36932 * 135.99916 * 153.32713 * 16 15 14 18 18 H 1.08005 * 119.99702 * 9.80860 * 17 16 15 19 19 C 1.38812 * 120.00174 * 189.81274 * 17 16 15 20 20 N 1.31619 * 120.00173 * 203.03262 * 19 17 16 21 21 Si 1.86798 * 119.99881 * 23.03052 * 19 17 16 22 22 H 1.48506 * 109.46911 * 270.00306 * 21 19 17 23 23 H 1.48504 * 109.47325 * 29.99773 * 21 19 17 24 24 H 1.48498 * 109.47550 * 150.00126 * 21 19 17 25 25 C 1.47176 * 87.99852 * 333.58054 * 16 15 14 26 26 C 1.47356 * 121.05713 * 179.97438 * 10 8 7 27 27 O 1.34305 * 125.78962 * 180.34554 * 2 1 3 28 28 H 1.08995 * 109.47128 * 90.00190 * 1 2 3 29 29 H 1.09000 * 109.46492 * 210.00207 * 1 2 3 30 30 H 1.08998 * 109.47133 * 330.00196 * 1 2 3 31 31 H 1.08006 * 126.58195 * 0.02562 * 3 2 1 32 32 H 1.08003 * 126.58368 * 179.97438 * 4 3 2 33 33 H 1.09006 * 109.47049 * 329.99545 * 6 5 4 34 34 H 1.08994 * 109.46751 * 210.00199 * 6 5 4 35 35 H 1.09001 * 109.47238 * 60.00262 * 7 6 5 36 36 H 1.08994 * 109.47561 * 299.99781 * 7 6 5 37 37 H 1.09004 * 109.58915 * 247.49750 * 11 10 8 38 38 H 1.08997 * 109.59426 * 7.94858 * 11 10 8 39 39 H 1.08997 * 109.49358 * 174.15890 * 12 11 10 40 40 H 1.09003 * 109.49228 * 294.22945 * 12 11 10 41 41 H 1.09002 * 113.48695 * 156.97331 * 15 14 13 42 42 H 1.08998 * 113.54452 * 26.47644 * 15 14 13 43 43 H 0.96997 * 119.99623 * 354.66306 * 20 19 17 44 44 H 1.09002 * 113.48842 * 141.17433 * 25 16 15 45 45 H 1.09002 * 113.48977 * 271.67770 * 25 16 15 46 46 H 1.09001 * 109.74547 * 108.59585 * 26 10 8 47 47 H 1.09002 * 109.78852 * 347.89114 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6308 0.6321 -0.0006 5 6 3.5814 -0.7122 -0.0004 6 6 4.7706 -1.6378 -0.0003 7 6 5.1732 -1.9508 1.4422 8 6 6.3621 -2.8770 1.4423 9 8 6.8405 -3.2495 0.3919 10 7 6.8942 -3.2903 2.6095 11 6 6.3335 -2.8515 3.8971 12 6 6.0533 -4.0873 4.7584 13 8 7.2455 -4.8720 4.8641 14 6 7.7500 -5.3297 3.6141 15 6 6.9558 -6.4828 2.9993 16 7 7.8163 -7.4059 3.7563 17 6 7.6958 -8.6714 4.2650 18 1 6.8439 -9.2806 4.0011 19 6 8.6683 -9.1714 5.1200 20 7 8.8227 -10.4717 5.2526 21 14 9.7581 -7.9986 6.0825 22 1 10.9720 -7.6851 5.2866 23 1 9.0117 -6.7453 6.3612 24 1 10.1569 -8.6328 7.3647 25 6 8.8611 -6.3695 3.7322 26 6 8.0561 -4.1962 2.6368 27 8 2.2924 -1.0894 -0.0066 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3632 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.9666 2.1205 0.0004 32 1 4.5212 1.2434 -0.0012 33 1 5.6040 -1.1587 -0.5143 34 1 4.5107 -2.5633 -0.5139 35 1 4.3399 -2.4299 1.9562 36 1 5.4332 -1.0253 1.9559 37 1 7.0489 -2.2056 4.4061 38 1 5.4047 -2.3077 3.7250 39 1 5.7353 -3.7733 5.7526 40 1 5.2661 -4.6825 4.2955 41 1 7.0750 -6.5650 1.9189 42 1 5.9117 -6.5076 3.3113 43 1 8.2079 -11.0803 4.8138 44 1 9.4238 -6.2982 4.6631 45 1 9.5036 -6.4206 2.8532 46 1 8.9398 -3.6517 2.9698 47 1 8.2289 -4.6049 1.6412 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053540986.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:35 Heat of formation + Delta-G solvation = 9.924359 kcal Electronic energy + Delta-G solvation = -28990.724886 eV Core-core repulsion = 24950.127416 eV Total energy + Delta-G solvation = -4040.597471 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 5.61 seconds Orbital eigenvalues (eV) -42.89023 -40.72213 -39.16413 -36.65307 -34.69320 -34.51360 -33.46424 -32.47713 -31.50428 -30.36303 -28.45228 -27.34649 -25.81974 -25.55536 -23.69482 -23.42163 -22.04104 -21.37291 -20.40125 -19.44915 -18.95471 -17.69799 -17.49766 -16.64594 -16.50485 -16.38493 -16.09869 -15.72265 -15.23992 -14.76412 -14.55461 -14.48425 -14.17390 -13.83333 -13.69768 -13.46448 -13.42139 -13.28443 -13.10994 -13.03140 -12.80768 -12.65895 -12.52317 -12.14113 -12.00041 -11.64018 -11.42030 -11.33811 -11.19341 -10.78961 -10.69098 -10.43260 -10.18011 -9.92300 -9.75728 -9.39284 -9.04728 -8.57175 -8.56218 -8.51506 -7.16122 -6.31725 -3.17644 1.38080 2.28080 2.47071 2.53581 2.81745 3.45241 3.58804 3.74885 3.80324 4.11333 4.44241 4.54986 4.58790 4.63448 4.64839 4.72007 4.74171 4.78172 4.83126 4.87389 4.97933 5.03877 5.09180 5.12807 5.19885 5.29478 5.35996 5.43192 5.53505 5.55681 5.60007 5.63543 5.70978 5.73148 5.84168 5.90139 6.06808 6.16797 6.21235 6.23844 6.25139 6.36198 6.49767 6.88864 7.12731 7.21800 7.52046 7.99659 8.27291 8.98745 9.54184 10.39834 11.18714 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.024831 B = 0.002344 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.371394 B =11944.630678 C =12114.823454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.018 4.018 3 C -0.213 4.213 4 C -0.207 4.207 5 C -0.010 4.010 6 C -0.024 4.024 7 C -0.136 4.136 8 C 0.518 3.482 9 O -0.539 6.539 10 N -0.612 5.612 11 C 0.072 3.928 12 C 0.044 3.956 13 O -0.334 6.334 14 C 0.056 3.944 15 C 0.105 3.895 16 N -0.614 5.614 17 C -0.310 4.310 18 H 0.078 0.922 19 C -0.019 4.019 20 N -0.922 5.922 21 Si 1.056 2.944 22 H -0.293 1.293 23 H -0.274 1.274 24 H -0.296 1.296 25 C 0.121 3.879 26 C 0.101 3.899 27 O -0.173 6.173 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.146 0.854 32 H 0.148 0.852 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.080 0.920 38 H 0.092 0.908 39 H 0.105 0.895 40 H 0.056 0.944 41 H 0.048 0.952 42 H 0.045 0.955 43 H 0.262 0.738 44 H 0.059 0.941 45 H 0.059 0.941 46 H 0.076 0.924 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.158 26.861 -7.773 30.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.068 4.068 3 C -0.232 4.232 4 C -0.226 4.226 5 C -0.060 4.060 6 C -0.061 4.061 7 C -0.176 4.176 8 C 0.306 3.694 9 O -0.416 6.416 10 N -0.346 5.346 11 C -0.051 4.051 12 C -0.034 4.034 13 O -0.251 6.251 14 C 0.014 3.986 15 C -0.022 4.022 16 N -0.342 5.342 17 C -0.436 4.436 18 H 0.096 0.904 19 C -0.219 4.219 20 N -0.563 5.563 21 Si 0.888 3.112 22 H -0.221 1.221 23 H -0.200 1.200 24 H -0.224 1.224 25 C -0.005 4.005 26 C -0.022 4.022 27 O -0.070 6.070 28 H 0.099 0.901 29 H 0.095 0.905 30 H 0.106 0.894 31 H 0.164 0.836 32 H 0.165 0.835 33 H 0.121 0.879 34 H 0.109 0.891 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.098 0.902 38 H 0.110 0.890 39 H 0.123 0.877 40 H 0.075 0.925 41 H 0.066 0.934 42 H 0.063 0.937 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.094 0.906 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -11.678 26.098 -7.009 29.438 hybrid contribution -1.466 0.269 -1.173 1.896 sum -13.144 26.367 -8.182 30.576 Atomic orbital electron populations 1.20305 0.85172 1.04062 1.03510 1.22461 0.94035 0.84214 1.06064 1.21563 0.92752 0.99339 1.09518 1.21592 0.98233 0.93847 1.08906 1.22403 0.82987 0.94540 1.06034 1.19850 0.91243 0.98686 0.96361 1.21690 0.97148 1.00174 0.98575 1.20509 0.84485 0.81215 0.83175 1.90716 1.62659 1.57546 1.30652 1.48200 1.32337 1.48251 1.05771 1.22486 1.00019 0.98023 0.84598 1.22925 0.88866 0.90994 1.00583 1.88024 1.41087 1.69149 1.26889 1.23053 0.99040 0.91457 0.85021 1.22848 0.95801 0.87739 0.95816 1.45647 1.10317 1.14586 1.63636 1.19922 1.11445 0.86594 1.25599 0.90425 1.25744 0.99422 0.98715 0.98000 1.70947 1.35206 1.01155 1.49023 0.83887 0.75425 0.75090 0.76780 1.22110 1.20007 1.22384 1.22536 0.92166 0.85323 1.00477 1.22156 0.87563 0.90652 1.01792 1.83981 1.16429 1.35127 1.71488 0.90146 0.90503 0.89381 0.83587 0.83451 0.87912 0.89108 0.88437 0.88358 0.90196 0.88953 0.87692 0.92536 0.93415 0.93691 0.92814 0.92285 0.92316 0.90617 0.87649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.38 10.42 36.01 0.38 0.00 16 2 C -0.02 -0.15 7.32 -35.62 -0.26 -0.42 16 3 C -0.21 -1.78 10.81 -39.71 -0.43 -2.21 16 4 C -0.21 -1.83 10.81 -39.70 -0.43 -2.26 16 5 C -0.01 -0.09 6.58 -35.62 -0.23 -0.33 16 6 C -0.02 -0.22 5.04 -27.89 -0.14 -0.36 16 7 C -0.14 -1.17 4.05 -27.88 -0.11 -1.29 16 8 C 0.52 6.40 7.71 -10.98 -0.08 6.31 16 9 O -0.54 -8.52 15.48 5.56 0.09 -8.43 16 10 N -0.61 -7.59 3.03 -172.49 -0.52 -8.11 16 11 C 0.07 0.70 6.50 -3.58 -0.02 0.67 16 12 C 0.04 0.55 6.90 37.27 0.26 0.81 16 13 O -0.33 -6.05 10.53 -35.23 -0.37 -6.42 16 14 C 0.06 1.02 1.27 -90.97 -0.12 0.91 16 15 C 0.10 2.18 7.91 -8.22 -0.07 2.11 16 16 N -0.61 -15.70 3.58 -184.98 -0.66 -16.36 16 17 C -0.31 -9.19 10.96 -15.06 -0.17 -9.35 16 18 H 0.08 2.43 8.06 -52.48 -0.42 2.00 16 19 C -0.02 -0.57 5.50 -17.43 -0.10 -0.66 16 20 N -0.92 -29.48 13.70 55.49 0.76 -28.72 16 21 Si 1.06 27.25 25.33 -169.99 -4.31 22.95 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 23 H -0.27 -6.78 6.56 56.52 0.37 -6.41 16 24 H -0.30 -7.68 7.11 56.52 0.40 -7.27 16 25 C 0.12 2.62 6.58 -8.36 -0.05 2.57 16 26 C 0.10 1.49 5.83 -3.69 -0.02 1.47 16 27 O -0.17 -1.86 10.65 5.70 0.06 -1.80 16 28 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.15 0.90 8.06 -52.48 -0.42 0.48 16 32 H 0.15 1.04 8.06 -52.48 -0.42 0.61 16 33 H 0.10 0.91 8.10 -51.93 -0.42 0.49 16 34 H 0.09 0.94 8.10 -51.93 -0.42 0.51 16 35 H 0.10 0.77 7.69 -51.93 -0.40 0.37 16 36 H 0.10 0.65 7.98 -51.93 -0.41 0.24 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.09 0.61 6.03 -51.93 -0.31 0.30 16 39 H 0.11 1.06 8.14 -51.93 -0.42 0.63 16 40 H 0.06 0.74 7.30 -51.93 -0.38 0.36 16 41 H 0.05 0.97 7.93 -51.93 -0.41 0.56 16 42 H 0.04 0.93 7.36 -51.93 -0.38 0.55 16 43 H 0.26 8.26 8.73 -40.82 -0.36 7.90 16 44 H 0.06 1.34 3.74 -51.93 -0.19 1.15 16 45 H 0.06 1.18 8.09 -51.93 -0.42 0.76 16 46 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.11 1.64 6.90 -51.93 -0.36 1.28 16 LS Contribution 378.24 15.07 5.70 5.70 Total: -1.00 -36.95 378.24 -7.96 -44.91 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -7.10 Total: -1.68 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -1.60 Total: -2.02 kcal Atomic # 7 Polarization: -52.78 SS G_CDS: -0.42 Total: -53.20 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: -0.22 Total: -16.65 kcal Atomic # 14 Polarization: 27.25 SS G_CDS: -4.31 Total: 22.95 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.95 -7.96 -44.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053540986.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.834 kcal (2) G-P(sol) polarization free energy of solvation -36.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.61 seconds