Wall clock time and date at job start Tue Mar 31 2020 17:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34512 * 125.78910 * 2 1 4 4 C 1.41376 * 106.84375 * 180.02562 * 3 2 1 5 5 C 1.34523 * 106.84082 * 359.97438 * 4 3 2 6 6 C 1.50700 * 125.79065 * 180.02562 * 5 4 3 7 7 C 1.52996 * 109.47067 * 89.99922 * 6 5 4 8 8 C 1.50710 * 109.46859 * 179.97438 * 7 6 5 9 9 O 1.21280 * 119.99802 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99627 * 179.97438 * 8 7 6 11 11 C 1.47131 * 121.06297 * 359.97438 * 10 8 7 12 12 C 1.53223 * 108.72910 * 127.72396 * 11 10 8 13 13 O 1.43115 * 109.35545 * 54.19200 * 12 11 10 14 14 C 1.42357 * 113.99425 * 300.22452 * 13 12 11 15 15 C 1.52923 * 114.29526 * 285.04832 * 14 13 12 16 16 N 1.47161 * 87.84547 * 271.71962 * 15 14 13 17 17 C 1.36932 * 135.99916 * 153.32713 * 16 15 14 18 18 H 1.08005 * 119.99702 * 9.80860 * 17 16 15 19 19 C 1.38812 * 120.00174 * 189.81274 * 17 16 15 20 20 N 1.31619 * 120.00173 * 203.03262 * 19 17 16 21 21 Si 1.86798 * 119.99881 * 23.03052 * 19 17 16 22 22 H 1.48506 * 109.46911 * 270.00306 * 21 19 17 23 23 H 1.48504 * 109.47325 * 29.99773 * 21 19 17 24 24 H 1.48498 * 109.47550 * 150.00126 * 21 19 17 25 25 C 1.47176 * 87.99852 * 333.58054 * 16 15 14 26 26 C 1.47356 * 121.05713 * 179.97438 * 10 8 7 27 27 O 1.34305 * 125.78962 * 180.34554 * 2 1 3 28 28 H 1.08995 * 109.47128 * 90.00190 * 1 2 3 29 29 H 1.09000 * 109.46492 * 210.00207 * 1 2 3 30 30 H 1.08998 * 109.47133 * 330.00196 * 1 2 3 31 31 H 1.08006 * 126.58195 * 0.02562 * 3 2 1 32 32 H 1.08003 * 126.58368 * 179.97438 * 4 3 2 33 33 H 1.09006 * 109.47049 * 329.99545 * 6 5 4 34 34 H 1.08994 * 109.46751 * 210.00199 * 6 5 4 35 35 H 1.09001 * 109.47238 * 60.00262 * 7 6 5 36 36 H 1.08994 * 109.47561 * 299.99781 * 7 6 5 37 37 H 1.09004 * 109.58915 * 247.49750 * 11 10 8 38 38 H 1.08997 * 109.59426 * 7.94858 * 11 10 8 39 39 H 1.08997 * 109.49358 * 174.15890 * 12 11 10 40 40 H 1.09003 * 109.49228 * 294.22945 * 12 11 10 41 41 H 1.09002 * 113.48695 * 156.97331 * 15 14 13 42 42 H 1.08998 * 113.54452 * 26.47644 * 15 14 13 43 43 H 0.96997 * 119.99623 * 354.66306 * 20 19 17 44 44 H 1.09002 * 113.48842 * 141.17433 * 25 16 15 45 45 H 1.09002 * 113.48977 * 271.67770 * 25 16 15 46 46 H 1.09001 * 109.74547 * 108.59585 * 26 10 8 47 47 H 1.09002 * 109.78852 * 347.89114 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6308 0.6321 -0.0006 5 6 3.5814 -0.7122 -0.0004 6 6 4.7706 -1.6378 -0.0003 7 6 5.1732 -1.9508 1.4422 8 6 6.3621 -2.8770 1.4423 9 8 6.8405 -3.2495 0.3919 10 7 6.8942 -3.2903 2.6095 11 6 6.3335 -2.8515 3.8971 12 6 6.0533 -4.0873 4.7584 13 8 7.2455 -4.8720 4.8641 14 6 7.7500 -5.3297 3.6141 15 6 6.9558 -6.4828 2.9993 16 7 7.8163 -7.4059 3.7563 17 6 7.6958 -8.6714 4.2650 18 1 6.8439 -9.2806 4.0011 19 6 8.6683 -9.1714 5.1200 20 7 8.8227 -10.4717 5.2526 21 14 9.7581 -7.9986 6.0825 22 1 10.9720 -7.6851 5.2866 23 1 9.0117 -6.7453 6.3612 24 1 10.1569 -8.6328 7.3647 25 6 8.8611 -6.3695 3.7322 26 6 8.0561 -4.1962 2.6368 27 8 2.2924 -1.0894 -0.0066 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3632 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.9666 2.1205 0.0004 32 1 4.5212 1.2434 -0.0012 33 1 5.6040 -1.1587 -0.5143 34 1 4.5107 -2.5633 -0.5139 35 1 4.3399 -2.4299 1.9562 36 1 5.4332 -1.0253 1.9559 37 1 7.0489 -2.2056 4.4061 38 1 5.4047 -2.3077 3.7250 39 1 5.7353 -3.7733 5.7526 40 1 5.2661 -4.6825 4.2955 41 1 7.0750 -6.5650 1.9189 42 1 5.9117 -6.5076 3.3113 43 1 8.2079 -11.0803 4.8138 44 1 9.4238 -6.2982 4.6631 45 1 9.5036 -6.4206 2.8532 46 1 8.9398 -3.6517 2.9698 47 1 8.2289 -4.6049 1.6412 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053540986.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:28 Heat of formation + Delta-G solvation = -16.085938 kcal Electronic energy + Delta-G solvation = -28991.852777 eV Core-core repulsion = 24950.127416 eV Total energy + Delta-G solvation = -4041.725362 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 3.92 seconds Orbital eigenvalues (eV) -43.53518 -41.95412 -40.39350 -38.04398 -35.82272 -35.25632 -34.62807 -34.07226 -32.24913 -31.58712 -29.60477 -28.59558 -27.27533 -26.91245 -24.56701 -24.48159 -23.10495 -22.64241 -21.06973 -20.83287 -20.02751 -19.61254 -18.55274 -17.94081 -17.31314 -17.27732 -17.12853 -16.81940 -16.39431 -16.25341 -15.82831 -15.50994 -15.28097 -15.13545 -15.02203 -14.83828 -14.48398 -14.06757 -13.87799 -13.71590 -13.70563 -13.53080 -13.48860 -13.21593 -12.96240 -12.83377 -12.71816 -12.67386 -12.58260 -12.14006 -12.06586 -11.85547 -11.57730 -11.30139 -10.90251 -10.86592 -10.78276 -10.67373 -9.64297 -9.26269 -9.18976 -8.70286 -5.48217 0.73741 1.38497 1.52646 1.54409 1.65051 1.73596 1.80285 2.04998 2.50810 2.53369 2.81530 3.18461 3.32087 3.40709 3.68112 3.81141 3.88870 3.95075 4.01792 4.10432 4.16615 4.18691 4.24631 4.33330 4.47026 4.49017 4.51917 4.55357 4.58372 4.59233 4.66075 4.71540 4.74758 4.79567 4.87336 4.88890 4.93255 4.93674 5.01365 5.14430 5.15326 5.27574 5.33561 5.67366 5.90934 6.23317 6.25820 6.30905 6.64064 7.05823 7.29093 8.23374 8.81930 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.024831 B = 0.002344 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.371394 B =11944.630678 C =12114.823454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.030 4.030 3 C -0.223 4.223 4 C -0.207 4.207 5 C -0.028 4.028 6 C -0.019 4.019 7 C -0.124 4.124 8 C 0.516 3.484 9 O -0.579 6.579 10 N -0.614 5.614 11 C 0.077 3.923 12 C 0.034 3.966 13 O -0.363 6.363 14 C 0.086 3.914 15 C 0.102 3.898 16 N -0.648 5.648 17 C -0.301 4.301 18 H 0.042 0.958 19 C -0.076 4.076 20 N -0.955 5.955 21 Si 1.102 2.898 22 H -0.271 1.271 23 H -0.258 1.258 24 H -0.300 1.300 25 C 0.108 3.892 26 C 0.110 3.890 27 O -0.197 6.197 28 H 0.089 0.911 29 H 0.077 0.923 30 H 0.108 0.892 31 H 0.167 0.833 32 H 0.165 0.835 33 H 0.104 0.896 34 H 0.071 0.929 35 H 0.109 0.891 36 H 0.129 0.871 37 H 0.101 0.899 38 H 0.130 0.870 39 H 0.134 0.866 40 H 0.045 0.955 41 H 0.053 0.947 42 H 0.040 0.960 43 H 0.247 0.753 44 H 0.054 0.946 45 H 0.078 0.922 46 H 0.098 0.902 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.614 31.325 -7.312 34.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.079 4.079 3 C -0.242 4.242 4 C -0.226 4.226 5 C -0.077 4.077 6 C -0.056 4.056 7 C -0.164 4.164 8 C 0.307 3.693 9 O -0.459 6.459 10 N -0.347 5.347 11 C -0.045 4.045 12 C -0.043 4.043 13 O -0.282 6.282 14 C 0.044 3.956 15 C -0.024 4.024 16 N -0.376 5.376 17 C -0.429 4.429 18 H 0.060 0.940 19 C -0.270 4.270 20 N -0.599 5.599 21 Si 0.928 3.072 22 H -0.198 1.198 23 H -0.183 1.183 24 H -0.228 1.228 25 C -0.016 4.016 26 C -0.014 4.014 27 O -0.095 6.095 28 H 0.108 0.892 29 H 0.096 0.904 30 H 0.127 0.873 31 H 0.184 0.816 32 H 0.182 0.818 33 H 0.122 0.878 34 H 0.089 0.911 35 H 0.127 0.873 36 H 0.147 0.853 37 H 0.119 0.881 38 H 0.148 0.852 39 H 0.151 0.849 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.058 0.942 43 H 0.056 0.944 44 H 0.072 0.928 45 H 0.095 0.905 46 H 0.116 0.884 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.170 30.619 -6.568 33.598 hybrid contribution -1.499 -1.102 -1.404 2.331 sum -13.669 29.517 -7.972 33.491 Atomic orbital electron populations 1.20471 0.83043 1.05123 1.04431 1.23173 0.95434 0.83918 1.05406 1.21906 0.92580 1.00319 1.09364 1.21895 0.99180 0.93657 1.07875 1.22474 0.82817 0.94983 1.07457 1.19755 0.91327 0.97810 0.96753 1.21684 0.95566 1.00549 0.98588 1.21137 0.84789 0.81019 0.82393 1.90706 1.63955 1.59087 1.32146 1.48297 1.31733 1.47638 1.07029 1.22674 1.02281 0.96844 0.82695 1.23297 0.86543 0.91434 1.02993 1.87964 1.43206 1.70252 1.26760 1.22559 0.95888 0.91501 0.85644 1.23007 0.95466 0.88313 0.95601 1.45766 1.13548 1.14152 1.64144 1.19773 1.09918 0.88303 1.24869 0.94021 1.27062 1.01542 0.99301 0.99049 1.71053 1.36096 1.02089 1.50660 0.83308 0.74879 0.73624 0.75416 1.19770 1.18347 1.22762 1.22809 0.92749 0.85244 1.00843 1.21894 0.89390 0.90189 0.99914 1.83967 1.17069 1.36365 1.72067 0.89223 0.90418 0.87326 0.81560 0.81790 0.87761 0.91061 0.87265 0.85288 0.88090 0.85244 0.84876 0.93680 0.92977 0.94213 0.94358 0.92829 0.90501 0.88397 0.88804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.60 10.42 71.24 0.74 0.14 16 2 C -0.03 -0.46 7.32 24.83 0.18 -0.28 16 3 C -0.22 -3.20 10.81 22.19 0.24 -2.96 16 4 C -0.21 -3.17 10.81 22.19 0.24 -2.93 16 5 C -0.03 -0.50 6.58 24.83 0.16 -0.33 16 6 C -0.02 -0.32 5.04 29.85 0.15 -0.17 16 7 C -0.12 -1.76 4.05 29.85 0.12 -1.64 16 8 C 0.52 11.49 7.71 87.66 0.68 12.17 16 9 O -0.58 -17.71 15.48 -3.03 -0.05 -17.76 16 10 N -0.61 -13.25 3.03 -818.02 -2.48 -15.73 16 11 C 0.08 1.13 6.50 86.33 0.56 1.69 16 12 C 0.03 0.74 6.90 72.06 0.50 1.24 16 13 O -0.36 -12.26 10.53 -148.98 -1.57 -13.83 16 14 C 0.09 2.98 1.27 -11.02 -0.01 2.97 16 15 C 0.10 4.24 7.91 83.31 0.66 4.90 16 16 N -0.65 -33.40 3.58 -740.04 -2.65 -36.05 16 17 C -0.30 -18.49 10.96 84.03 0.92 -17.57 16 18 H 0.04 2.77 8.06 -2.91 -0.02 2.75 16 19 C -0.08 -4.72 5.50 84.86 0.47 -4.26 16 20 N -0.96 -63.21 13.70 21.65 0.30 -62.92 16 21 Si 1.10 55.33 25.33 68.60 1.74 57.06 16 22 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 23 H -0.26 -12.16 6.56 99.48 0.65 -11.51 16 24 H -0.30 -15.08 7.11 99.48 0.71 -14.37 16 25 C 0.11 4.57 6.58 83.22 0.55 5.12 16 26 C 0.11 2.96 5.83 86.14 0.50 3.46 16 27 O -0.20 -4.00 10.65 -2.53 -0.03 -4.03 16 28 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.17 1.56 8.06 -2.91 -0.02 1.53 16 32 H 0.16 1.82 8.06 -2.91 -0.02 1.80 16 33 H 0.10 1.70 8.10 -2.38 -0.02 1.68 16 34 H 0.07 1.47 8.10 -2.39 -0.02 1.45 16 35 H 0.11 1.34 7.69 -2.39 -0.02 1.32 16 36 H 0.13 1.08 7.98 -2.39 -0.02 1.06 16 37 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.13 0.99 6.03 -2.39 -0.01 0.97 16 39 H 0.13 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.04 1.08 7.30 -2.39 -0.02 1.07 16 41 H 0.05 2.12 7.93 -2.39 -0.02 2.10 16 42 H 0.04 1.66 7.36 -2.39 -0.02 1.65 16 43 H 0.25 16.44 8.73 -92.71 -0.81 15.63 16 44 H 0.05 2.33 3.74 -2.39 -0.01 2.32 16 45 H 0.08 2.95 8.09 -2.39 -0.02 2.93 16 46 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 47 H 0.09 2.78 6.90 -2.39 -0.02 2.76 16 Total: -1.00 -84.14 378.24 2.80 -81.34 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: 0.88 Total: 10.37 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: 6.66 Total: 1.54 kcal Atomic # 7 Polarization: -109.87 SS G_CDS: -4.83 Total: -114.70 kcal Atomic # 8 Polarization: -33.97 SS G_CDS: -1.64 Total: -35.62 kcal Atomic # 14 Polarization: 55.33 SS G_CDS: 1.74 Total: 57.06 kcal Total: -84.14 2.80 -81.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053540986.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.252 kcal (2) G-P(sol) polarization free energy of solvation -84.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.92 seconds