Wall clock time and date at job start Tue Mar 31 2020 18:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34182 * 125.43551 * 2 1 4 4 C 1.47028 * 105.94838 * 180.13894 * 3 2 1 5 5 C 1.47382 * 127.18766 * 179.82480 * 4 3 2 6 6 O 1.21615 * 119.99394 * 179.68474 * 5 4 3 7 7 N 1.34771 * 120.00382 * 359.68814 * 5 4 3 8 8 C 1.46503 * 120.00286 * 179.97438 * 7 5 4 9 9 C 1.52995 * 109.47045 * 179.97438 * 8 7 5 10 10 H 1.09002 * 110.37339 * 57.82096 * 9 8 7 11 11 C 1.54561 * 110.32111 * 179.97438 * 9 8 7 12 12 C 1.54764 * 104.07370 * 142.48943 * 11 9 8 13 13 C 1.53343 * 103.67787 * 359.13671 * 12 11 9 14 14 C 1.52321 * 116.12578 * 108.90886 * 13 12 11 15 15 N 1.47289 * 87.68603 * 91.18386 * 14 13 12 16 16 C 1.36929 * 135.92999 * 206.12489 * 15 14 13 17 17 H 1.08008 * 120.00050 * 7.80082 * 16 15 14 18 18 C 1.38812 * 120.00343 * 187.79804 * 16 15 14 19 19 N 1.31614 * 120.00431 * 195.40095 * 18 16 15 20 20 Si 1.86801 * 119.99684 * 15.40320 * 18 16 15 21 21 H 1.48496 * 109.47032 * 270.00019 * 20 18 16 22 22 H 1.48500 * 109.47116 * 149.99605 * 20 18 16 23 23 H 1.48509 * 109.47065 * 29.99943 * 20 18 16 24 24 C 1.47292 * 88.14051 * 26.38041 * 15 14 13 25 25 O 1.43095 * 106.44858 * 337.45461 * 13 12 11 26 26 C 1.36411 * 105.61511 * 359.56685 * 4 3 2 27 27 C 1.50702 * 125.79896 * 180.25808 * 26 4 3 28 28 O 1.33647 * 108.40194 * 0.26284 * 26 4 3 29 29 H 1.08994 * 109.47253 * 180.36548 * 1 2 3 30 30 H 1.09002 * 109.47680 * 300.37138 * 1 2 3 31 31 H 1.09007 * 109.46906 * 60.36960 * 1 2 3 32 32 H 1.07991 * 127.02896 * 359.96674 * 3 2 1 33 33 H 0.97007 * 119.99872 * 359.97438 * 7 5 4 34 34 H 1.09000 * 109.46451 * 59.99885 * 8 7 5 35 35 H 1.08998 * 109.46796 * 299.99849 * 8 7 5 36 36 H 1.09004 * 110.50534 * 23.84490 * 11 9 8 37 37 H 1.08995 * 110.51129 * 261.14096 * 11 9 8 38 38 H 1.09007 * 110.58497 * 240.58933 * 12 11 9 39 39 H 1.09004 * 110.71379 * 117.75113 * 12 11 9 40 40 H 1.09002 * 113.51562 * 336.48092 * 14 13 12 41 41 H 1.08996 * 113.58099 * 205.90071 * 14 13 12 42 42 H 0.97007 * 119.99654 * 354.91483 * 19 18 16 43 43 H 1.08997 * 113.51508 * 88.32433 * 24 15 14 44 44 H 1.08994 * 113.51156 * 218.91211 * 24 15 14 45 45 H 1.09009 * 109.46969 * 90.00260 * 27 26 4 46 46 H 1.08996 * 109.47498 * 209.99603 * 27 26 4 47 47 H 1.08996 * 109.47381 * 330.00538 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0933 0.0000 4 6 3.6710 0.6028 -0.0034 5 6 4.9025 1.4125 -0.0083 6 8 5.9891 0.8665 -0.0050 7 7 4.8244 2.7579 -0.0164 8 6 6.0485 3.5628 -0.0207 9 6 5.6822 5.0482 -0.0304 10 1 5.0623 5.2918 0.8325 11 6 6.9609 5.9164 -0.0344 12 6 6.6043 7.1072 -0.9564 13 6 5.1718 6.7994 -1.4086 14 6 4.0795 7.6880 -0.8277 15 7 4.2577 8.5683 -1.9950 16 6 4.0569 9.8954 -2.2662 17 1 3.7948 10.5758 -1.4693 18 6 4.1903 10.3664 -3.5651 19 7 4.3000 11.6587 -3.7886 20 14 4.2140 9.1658 -4.9960 21 1 5.6127 8.7478 -5.2683 22 1 3.6497 9.8224 -6.2025 23 1 3.3984 7.9726 -4.6546 24 6 4.7401 7.3961 -2.7451 25 8 4.9933 5.3879 -1.2563 26 6 3.5789 -0.7582 0.0048 27 6 4.7389 -1.7202 0.0106 28 8 2.2852 -1.0935 0.0067 29 1 -0.3633 -1.0276 0.0066 30 1 -0.3634 0.5196 0.8866 31 1 -0.3633 0.5081 -0.8933 32 1 1.9596 2.1230 -0.0005 33 1 3.9576 3.1934 -0.0194 34 1 6.6347 3.3276 -0.9091 35 1 6.6339 3.3384 0.8709 36 1 7.8018 5.3557 -0.4427 37 1 7.1874 6.2673 0.9723 38 1 7.2772 7.1434 -1.8132 39 1 6.6384 8.0463 -0.4039 40 1 4.3565 8.1565 0.1167 41 1 3.1015 7.2084 -0.7898 42 1 4.2138 12.2869 -3.0544 43 1 3.9439 6.8354 -3.2348 44 1 5.5722 7.6194 -3.4126 45 1 5.0186 -1.9460 1.0397 46 1 4.4505 -2.6403 -0.4976 47 1 5.5868 -1.2702 -0.5059 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053571383.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:34 Heat of formation + Delta-G solvation = -10.226770 kcal Electronic energy + Delta-G solvation = -28654.178429 eV Core-core repulsion = 24612.707140 eV Total energy + Delta-G solvation = -4041.471289 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -42.87804 -40.36658 -39.39986 -36.96599 -34.70498 -33.44355 -33.16475 -32.35253 -32.02980 -30.08435 -29.28450 -27.21595 -25.65066 -25.42782 -24.13672 -22.86272 -21.56857 -21.32218 -21.06078 -19.67960 -19.12481 -17.53208 -17.41073 -16.80264 -16.58636 -16.12319 -15.86559 -15.71347 -15.02355 -14.82586 -14.63180 -14.31335 -13.84341 -13.69402 -13.65056 -13.43046 -13.40025 -13.20071 -13.08913 -12.97933 -12.89109 -12.70045 -12.32581 -11.97545 -11.88360 -11.61932 -11.52150 -11.23912 -10.94692 -10.69468 -10.48252 -10.34233 -10.09839 -10.03241 -9.74102 -9.35037 -9.21035 -9.05089 -8.75139 -8.65420 -7.24110 -6.35263 -3.27944 1.11555 1.72607 2.40768 3.05500 3.20836 3.41010 3.48254 3.61386 3.85650 4.14053 4.51007 4.54543 4.56559 4.60745 4.67258 4.82495 4.86764 4.91633 4.98223 5.00388 5.07691 5.15837 5.17464 5.21659 5.31943 5.35782 5.38100 5.42810 5.50165 5.58456 5.64734 5.78877 5.87766 5.92378 6.04967 6.16079 6.16886 6.23430 6.26419 6.29773 6.34199 6.36167 6.53903 6.77139 7.03412 7.24519 7.39300 8.08904 8.18979 8.92267 9.45210 10.30638 11.14741 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015577 B = 0.002558 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.115968 B =10943.997002 C =11922.249219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.013 4.013 3 C -0.185 4.185 4 C -0.242 4.242 5 C 0.591 3.409 6 O -0.548 6.548 7 N -0.715 5.715 8 C 0.130 3.870 9 C 0.062 3.938 10 H 0.074 0.926 11 C -0.145 4.145 12 C -0.113 4.113 13 C 0.061 3.939 14 C 0.106 3.894 15 N -0.615 5.615 16 C -0.305 4.305 17 H 0.083 0.917 18 C -0.021 4.021 19 N -0.929 5.929 20 Si 1.058 2.942 21 H -0.292 1.292 22 H -0.294 1.294 23 H -0.280 1.280 24 C 0.117 3.883 25 O -0.355 6.355 26 C 0.075 3.925 27 C -0.081 4.081 28 O -0.176 6.176 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.158 0.842 33 H 0.406 0.594 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.047 0.953 41 H 0.041 0.959 42 H 0.262 0.738 43 H 0.054 0.946 44 H 0.058 0.942 45 H 0.088 0.912 46 H 0.076 0.924 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.826 -25.336 11.141 27.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.061 4.061 3 C -0.204 4.204 4 C -0.246 4.246 5 C 0.379 3.621 6 O -0.428 6.428 7 N -0.366 5.366 8 C 0.006 3.994 9 C 0.004 3.996 10 H 0.092 0.908 11 C -0.183 4.183 12 C -0.151 4.151 13 C 0.020 3.980 14 C -0.021 4.021 15 N -0.345 5.345 16 C -0.431 4.431 17 H 0.101 0.899 18 C -0.221 4.221 19 N -0.571 5.571 20 Si 0.889 3.111 21 H -0.220 1.220 22 H -0.221 1.221 23 H -0.207 1.207 24 C -0.009 4.009 25 O -0.273 6.273 26 C 0.022 3.978 27 C -0.137 4.137 28 O -0.072 6.072 29 H 0.095 0.905 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.175 0.825 33 H 0.241 0.759 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.103 0.897 40 H 0.065 0.935 41 H 0.059 0.941 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.106 0.894 46 H 0.095 0.905 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.141 -25.964 9.315 27.608 hybrid contribution -0.760 0.811 1.758 2.080 sum -1.901 -25.153 11.073 27.548 Atomic orbital electron populations 1.20357 0.84613 1.04138 1.03984 1.22248 0.94020 0.83620 1.06256 1.22614 0.90724 0.99699 1.07410 1.21108 0.93817 0.93284 1.16392 1.17164 0.87352 0.81755 0.75816 1.90743 1.28795 1.71931 1.51300 1.45691 1.10362 1.05611 1.74926 1.21500 0.86876 0.87969 1.03050 1.23216 0.93743 0.93358 0.89314 0.90776 1.22951 0.97554 0.96790 1.01038 1.22323 0.94860 0.98276 0.99626 1.23589 0.95015 0.79586 0.99822 1.22703 0.95823 0.90442 0.93110 1.45968 1.75983 1.02942 1.09614 1.20081 1.47913 0.79403 0.95653 0.89914 1.25777 0.98851 0.99445 0.97991 1.70912 1.50140 1.00845 1.35161 0.83832 0.76664 0.74568 0.75991 1.21959 1.22101 1.20668 1.22603 0.97457 0.87716 0.93082 1.88949 1.74699 1.23215 1.40389 1.22763 0.82917 0.94029 0.98060 1.20610 0.92152 0.96621 1.04345 1.83706 1.16176 1.35699 1.71665 0.90499 0.89437 0.89339 0.82462 0.75942 0.90440 0.90125 0.90394 0.90319 0.90367 0.89664 0.93505 0.94097 0.92800 0.92852 0.92401 0.89401 0.90468 0.87220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.40 10.40 36.01 0.37 -0.03 16 2 C -0.01 -0.12 7.28 -35.74 -0.26 -0.38 16 3 C -0.19 -1.83 10.48 -37.45 -0.39 -2.22 16 4 C -0.24 -2.83 6.31 -103.27 -0.65 -3.49 16 5 C 0.59 7.69 7.81 -12.54 -0.10 7.59 16 6 O -0.55 -8.28 14.84 5.26 0.08 -8.20 16 7 N -0.72 -8.30 5.51 -61.40 -0.34 -8.64 16 8 C 0.13 1.47 5.28 -4.04 -0.02 1.45 16 9 C 0.06 0.74 3.35 -25.91 -0.09 0.66 16 10 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 11 C -0.15 -1.67 6.65 -24.98 -0.17 -1.83 16 12 C -0.11 -1.73 6.50 -25.62 -0.17 -1.89 16 13 C 0.06 1.07 1.39 -91.01 -0.13 0.94 16 14 C 0.11 2.08 8.18 -7.83 -0.06 2.02 16 15 N -0.62 -15.02 3.61 -184.83 -0.67 -15.69 16 16 C -0.30 -8.66 11.03 -15.06 -0.17 -8.83 16 17 H 0.08 2.47 8.06 -52.48 -0.42 2.04 16 18 C -0.02 -0.62 5.50 -17.43 -0.10 -0.72 16 19 N -0.93 -29.04 13.70 55.49 0.76 -28.28 16 20 Si 1.06 26.61 25.51 -169.99 -4.34 22.27 16 21 H -0.29 -7.04 6.97 56.52 0.39 -6.64 16 22 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 23 H -0.28 -6.63 5.64 56.52 0.32 -6.31 16 24 C 0.12 2.53 5.19 -7.69 -0.04 2.49 16 25 O -0.35 -5.58 11.12 -35.23 -0.39 -5.97 16 26 C 0.08 0.81 7.37 -34.97 -0.26 0.56 16 27 C -0.08 -0.68 9.89 36.01 0.36 -0.32 16 28 O -0.18 -1.83 10.52 7.66 0.08 -1.75 16 29 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.09 0.40 8.14 -51.92 -0.42 -0.02 16 32 H 0.16 1.25 7.74 -52.49 -0.41 0.85 16 33 H 0.41 4.24 7.64 -40.82 -0.31 3.93 16 34 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.08 0.81 7.87 -51.93 -0.41 0.40 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.08 1.20 8.12 -51.93 -0.42 0.78 16 39 H 0.08 1.37 7.92 -51.93 -0.41 0.95 16 40 H 0.05 0.87 8.07 -51.93 -0.42 0.45 16 41 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.26 8.06 8.73 -40.82 -0.36 7.71 16 43 H 0.05 1.17 6.97 -51.93 -0.36 0.81 16 44 H 0.06 1.28 6.28 -51.93 -0.33 0.95 16 45 H 0.09 0.63 8.14 -51.92 -0.42 0.21 16 46 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.11 1.07 6.48 -51.93 -0.34 0.73 16 LS Contribution 382.47 15.07 5.76 5.76 Total: -1.00 -34.51 382.47 -8.21 -42.72 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -7.30 Total: 1.78 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: -1.86 Total: -4.00 kcal Atomic # 7 Polarization: -52.36 SS G_CDS: -0.25 Total: -52.61 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: -0.23 Total: -15.92 kcal Atomic # 14 Polarization: 26.61 SS G_CDS: -4.34 Total: 22.27 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.51 -8.21 -42.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053571383.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.497 kcal (2) G-P(sol) polarization free energy of solvation -34.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds