Wall clock time and date at job start Tue Mar 31 2020 18:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34182 * 125.43551 * 2 1 4 4 C 1.47028 * 105.94838 * 180.13894 * 3 2 1 5 5 C 1.47382 * 127.18766 * 179.82480 * 4 3 2 6 6 O 1.21615 * 119.99394 * 179.68474 * 5 4 3 7 7 N 1.34771 * 120.00382 * 359.68814 * 5 4 3 8 8 C 1.46503 * 120.00286 * 179.97438 * 7 5 4 9 9 C 1.52995 * 109.47045 * 179.97438 * 8 7 5 10 10 H 1.09002 * 110.37339 * 57.82096 * 9 8 7 11 11 C 1.54561 * 110.32111 * 179.97438 * 9 8 7 12 12 C 1.54764 * 104.07370 * 142.48943 * 11 9 8 13 13 C 1.53343 * 103.67787 * 359.13671 * 12 11 9 14 14 C 1.52321 * 116.12578 * 108.90886 * 13 12 11 15 15 N 1.47289 * 87.68603 * 91.18386 * 14 13 12 16 16 C 1.36929 * 135.92999 * 206.12489 * 15 14 13 17 17 H 1.08008 * 120.00050 * 7.80082 * 16 15 14 18 18 C 1.38812 * 120.00343 * 187.79804 * 16 15 14 19 19 N 1.31614 * 120.00431 * 195.40095 * 18 16 15 20 20 Si 1.86801 * 119.99684 * 15.40320 * 18 16 15 21 21 H 1.48496 * 109.47032 * 270.00019 * 20 18 16 22 22 H 1.48500 * 109.47116 * 149.99605 * 20 18 16 23 23 H 1.48509 * 109.47065 * 29.99943 * 20 18 16 24 24 C 1.47292 * 88.14051 * 26.38041 * 15 14 13 25 25 O 1.43095 * 106.44858 * 337.45461 * 13 12 11 26 26 C 1.36411 * 105.61511 * 359.56685 * 4 3 2 27 27 C 1.50702 * 125.79896 * 180.25808 * 26 4 3 28 28 O 1.33647 * 108.40194 * 0.26284 * 26 4 3 29 29 H 1.08994 * 109.47253 * 180.36548 * 1 2 3 30 30 H 1.09002 * 109.47680 * 300.37138 * 1 2 3 31 31 H 1.09007 * 109.46906 * 60.36960 * 1 2 3 32 32 H 1.07991 * 127.02896 * 359.96674 * 3 2 1 33 33 H 0.97007 * 119.99872 * 359.97438 * 7 5 4 34 34 H 1.09000 * 109.46451 * 59.99885 * 8 7 5 35 35 H 1.08998 * 109.46796 * 299.99849 * 8 7 5 36 36 H 1.09004 * 110.50534 * 23.84490 * 11 9 8 37 37 H 1.08995 * 110.51129 * 261.14096 * 11 9 8 38 38 H 1.09007 * 110.58497 * 240.58933 * 12 11 9 39 39 H 1.09004 * 110.71379 * 117.75113 * 12 11 9 40 40 H 1.09002 * 113.51562 * 336.48092 * 14 13 12 41 41 H 1.08996 * 113.58099 * 205.90071 * 14 13 12 42 42 H 0.97007 * 119.99654 * 354.91483 * 19 18 16 43 43 H 1.08997 * 113.51508 * 88.32433 * 24 15 14 44 44 H 1.08994 * 113.51156 * 218.91211 * 24 15 14 45 45 H 1.09009 * 109.46969 * 90.00260 * 27 26 4 46 46 H 1.08996 * 109.47498 * 209.99603 * 27 26 4 47 47 H 1.08996 * 109.47381 * 330.00538 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0933 0.0000 4 6 3.6710 0.6028 -0.0034 5 6 4.9025 1.4125 -0.0083 6 8 5.9891 0.8665 -0.0050 7 7 4.8244 2.7579 -0.0164 8 6 6.0485 3.5628 -0.0207 9 6 5.6822 5.0482 -0.0304 10 1 5.0623 5.2918 0.8325 11 6 6.9609 5.9164 -0.0344 12 6 6.6043 7.1072 -0.9564 13 6 5.1718 6.7994 -1.4086 14 6 4.0795 7.6880 -0.8277 15 7 4.2577 8.5683 -1.9950 16 6 4.0569 9.8954 -2.2662 17 1 3.7948 10.5758 -1.4693 18 6 4.1903 10.3664 -3.5651 19 7 4.3000 11.6587 -3.7886 20 14 4.2140 9.1658 -4.9960 21 1 5.6127 8.7478 -5.2683 22 1 3.6497 9.8224 -6.2025 23 1 3.3984 7.9726 -4.6546 24 6 4.7401 7.3961 -2.7451 25 8 4.9933 5.3879 -1.2563 26 6 3.5789 -0.7582 0.0048 27 6 4.7389 -1.7202 0.0106 28 8 2.2852 -1.0935 0.0067 29 1 -0.3633 -1.0276 0.0066 30 1 -0.3634 0.5196 0.8866 31 1 -0.3633 0.5081 -0.8933 32 1 1.9596 2.1230 -0.0005 33 1 3.9576 3.1934 -0.0194 34 1 6.6347 3.3276 -0.9091 35 1 6.6339 3.3384 0.8709 36 1 7.8018 5.3557 -0.4427 37 1 7.1874 6.2673 0.9723 38 1 7.2772 7.1434 -1.8132 39 1 6.6384 8.0463 -0.4039 40 1 4.3565 8.1565 0.1167 41 1 3.1015 7.2084 -0.7898 42 1 4.2138 12.2869 -3.0544 43 1 3.9439 6.8354 -3.2348 44 1 5.5722 7.6194 -3.4126 45 1 5.0186 -1.9460 1.0397 46 1 4.4505 -2.6403 -0.4976 47 1 5.5868 -1.2702 -0.5059 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053571383.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:33 Heat of formation + Delta-G solvation = -34.568221 kcal Electronic energy + Delta-G solvation = -28655.233954 eV Core-core repulsion = 24612.707140 eV Total energy + Delta-G solvation = -4042.526814 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.62204 -41.70072 -40.42988 -38.39995 -35.77432 -34.50880 -34.14727 -33.85727 -33.13296 -31.08221 -30.24615 -28.82518 -27.21510 -26.31738 -25.17266 -23.82707 -23.24716 -22.32453 -21.90324 -20.75666 -20.53855 -19.47826 -18.29095 -17.72317 -17.51827 -17.37675 -17.01851 -16.69228 -16.29723 -16.22319 -15.83007 -15.49697 -15.33827 -15.00878 -14.63692 -14.44983 -14.28945 -14.13615 -14.09256 -13.82205 -13.62427 -13.47701 -13.37125 -13.25300 -13.17688 -12.72716 -12.67555 -12.53932 -12.41291 -12.23282 -12.15044 -11.67236 -11.46940 -11.30900 -11.08449 -10.86304 -10.83830 -10.51988 -10.13328 -9.37169 -9.29744 -8.64667 -5.50094 0.29218 1.00526 1.38665 1.48805 1.63592 1.70737 2.16705 2.29350 2.49849 2.59462 3.03593 3.16494 3.38958 3.48406 3.58867 3.67322 3.77929 3.83598 3.96120 4.10477 4.25883 4.35810 4.42473 4.45756 4.48745 4.54531 4.57963 4.60641 4.61492 4.67994 4.69613 4.73610 4.80202 4.83842 4.92398 4.95198 5.00720 5.02674 5.11630 5.13796 5.22194 5.22674 5.36767 5.43443 5.91866 5.96374 6.03509 6.48963 6.66179 7.15264 7.28966 8.22314 8.87047 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015577 B = 0.002558 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.115968 B =10943.997002 C =11922.249219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.015 4.015 3 C -0.197 4.197 4 C -0.267 4.267 5 C 0.588 3.412 6 O -0.575 6.575 7 N -0.711 5.711 8 C 0.134 3.866 9 C 0.063 3.937 10 H 0.092 0.908 11 C -0.134 4.134 12 C -0.117 4.117 13 C 0.084 3.916 14 C 0.106 3.894 15 N -0.644 5.644 16 C -0.289 4.289 17 H 0.056 0.944 18 C -0.078 4.078 19 N -0.965 5.965 20 Si 1.095 2.905 21 H -0.277 1.277 22 H -0.300 1.300 23 H -0.259 1.259 24 C 0.106 3.894 25 O -0.363 6.363 26 C 0.067 3.933 27 C -0.079 4.079 28 O -0.182 6.182 29 H 0.085 0.915 30 H 0.103 0.897 31 H 0.099 0.901 32 H 0.173 0.827 33 H 0.411 0.589 34 H 0.066 0.934 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.104 0.896 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.057 0.943 41 H 0.051 0.949 42 H 0.249 0.751 43 H 0.054 0.946 44 H 0.052 0.948 45 H 0.099 0.901 46 H 0.097 0.903 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.008 -27.959 12.192 30.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.063 4.063 3 C -0.216 4.216 4 C -0.271 4.271 5 C 0.377 3.623 6 O -0.457 6.457 7 N -0.361 5.361 8 C 0.010 3.990 9 C 0.006 3.994 10 H 0.110 0.890 11 C -0.172 4.172 12 C -0.155 4.155 13 C 0.043 3.957 14 C -0.020 4.020 15 N -0.374 5.374 16 C -0.416 4.416 17 H 0.074 0.926 18 C -0.271 4.271 19 N -0.610 5.610 20 Si 0.921 3.079 21 H -0.203 1.203 22 H -0.227 1.227 23 H -0.184 1.184 24 C -0.019 4.019 25 O -0.281 6.281 26 C 0.014 3.986 27 C -0.135 4.135 28 O -0.079 6.079 29 H 0.104 0.896 30 H 0.122 0.878 31 H 0.118 0.882 32 H 0.190 0.810 33 H 0.247 0.753 34 H 0.084 0.916 35 H 0.115 0.885 36 H 0.111 0.889 37 H 0.122 0.878 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.058 0.942 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.117 0.883 46 H 0.116 0.884 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.333 -28.621 10.411 30.485 hybrid contribution -0.754 1.558 1.559 2.330 sum -2.088 -27.063 11.970 29.666 Atomic orbital electron populations 1.20539 0.82005 1.05191 1.05254 1.22958 0.95459 0.83052 1.04818 1.22833 0.89964 1.00772 1.08077 1.21221 0.94214 0.93841 1.17825 1.17377 0.87424 0.82145 0.75371 1.90722 1.29808 1.72462 1.52758 1.45676 1.10806 1.05300 1.74340 1.21489 0.86787 0.87369 1.03312 1.23417 0.94054 0.93736 0.88233 0.89041 1.22941 0.97610 0.94999 1.01632 1.22342 0.93242 0.99556 1.00316 1.23099 0.95577 0.80584 0.96452 1.22874 0.97110 0.89895 0.92075 1.45961 1.76616 1.02575 1.12219 1.19934 1.45492 0.81437 0.94754 0.92650 1.26941 0.99395 1.00005 1.00763 1.71008 1.53403 1.01796 1.34778 0.83375 0.77809 0.73561 0.73181 1.20318 1.22740 1.18422 1.22742 0.97250 0.86937 0.94962 1.88936 1.75368 1.21448 1.42352 1.23170 0.83569 0.94345 0.97525 1.20641 0.90906 0.96865 1.05093 1.83724 1.16139 1.36369 1.71646 0.89588 0.87847 0.88222 0.80966 0.75254 0.91578 0.88500 0.88887 0.87782 0.90663 0.90608 0.92434 0.93148 0.94183 0.92844 0.92948 0.88299 0.88436 0.88738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.61 10.40 71.24 0.74 0.14 16 2 C -0.01 -0.24 7.28 24.76 0.18 -0.06 16 3 C -0.20 -3.58 10.48 23.65 0.25 -3.33 16 4 C -0.27 -6.00 6.31 -18.99 -0.12 -6.12 16 5 C 0.59 14.66 7.81 86.65 0.68 15.34 16 6 O -0.58 -17.01 14.84 -4.08 -0.06 -17.07 16 7 N -0.71 -15.07 5.51 -466.42 -2.57 -17.64 16 8 C 0.13 2.67 5.28 86.38 0.46 3.13 16 9 C 0.06 1.29 3.35 31.12 0.10 1.40 16 10 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 11 C -0.13 -2.57 6.65 31.73 0.21 -2.36 16 12 C -0.12 -3.28 6.50 31.31 0.20 -3.08 16 13 C 0.08 2.77 1.39 -11.03 -0.02 2.76 16 14 C 0.11 3.97 8.18 83.49 0.68 4.66 16 15 N -0.64 -30.98 3.61 -740.15 -2.67 -33.65 16 16 C -0.29 -16.67 11.03 84.03 0.93 -15.74 16 17 H 0.06 3.42 8.06 -2.91 -0.02 3.40 16 18 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 19 N -0.96 -62.07 13.70 21.65 0.30 -61.78 16 20 Si 1.10 53.79 25.51 68.60 1.75 55.54 16 21 H -0.28 -12.77 6.97 99.48 0.69 -12.08 16 22 H -0.30 -14.90 7.11 99.48 0.71 -14.19 16 23 H -0.26 -11.67 5.64 99.48 0.56 -11.10 16 24 C 0.11 4.41 5.19 83.58 0.43 4.85 16 25 O -0.36 -10.36 11.12 -148.98 -1.66 -12.02 16 26 C 0.07 1.39 7.37 25.26 0.19 1.57 16 27 C -0.08 -1.25 9.89 71.24 0.70 -0.55 16 28 O -0.18 -3.54 10.52 4.50 0.05 -3.50 16 29 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.10 0.54 8.14 -2.39 -0.02 0.53 16 31 H 0.10 0.63 8.14 -2.38 -0.02 0.61 16 32 H 0.17 2.40 7.74 -2.92 -0.02 2.38 16 33 H 0.41 7.67 7.64 -92.70 -0.71 6.96 16 34 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.09 1.56 7.87 -2.39 -0.02 1.54 16 37 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.07 2.17 8.12 -2.38 -0.02 2.15 16 39 H 0.08 2.28 7.92 -2.38 -0.02 2.26 16 40 H 0.06 2.03 8.07 -2.39 -0.02 2.01 16 41 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.25 16.00 8.73 -92.70 -0.81 15.19 16 43 H 0.05 2.23 6.97 -2.39 -0.02 2.22 16 44 H 0.05 2.23 6.28 -2.39 -0.02 2.22 16 45 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 46 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.09 1.82 6.48 -2.39 -0.02 1.81 16 Total: -1.00 -76.12 382.47 1.30 -74.82 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: 0.08 Total: 16.88 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: 6.09 Total: -1.60 kcal Atomic # 7 Polarization: -108.11 SS G_CDS: -4.95 Total: -113.06 kcal Atomic # 8 Polarization: -30.91 SS G_CDS: -1.67 Total: -32.58 kcal Atomic # 14 Polarization: 53.79 SS G_CDS: 1.75 Total: 55.54 kcal Total: -76.12 1.30 -74.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053571383.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.247 kcal (2) G-P(sol) polarization free energy of solvation -76.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds