Wall clock time and date at job start Tue Mar 31 2020 19:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35133 * 125.62191 * 2 1 4 4 C 1.40360 * 107.11910 * 179.78044 * 3 2 1 5 5 C 1.36545 * 106.70702 * 0.41345 * 4 3 2 6 6 C 1.46662 * 125.98924 * 179.85244 * 5 4 3 7 7 O 1.21698 * 119.99726 * 352.69815 * 6 5 4 8 8 N 1.34782 * 119.99990 * 172.69985 * 6 5 4 9 9 C 1.47152 * 121.06248 * 173.25961 * 8 6 5 10 10 C 1.53283 * 108.54988 * 128.84621 * 9 8 6 11 11 H 1.08999 * 109.51676 * 292.98895 * 10 9 8 12 12 C 1.52996 * 109.51479 * 172.82843 * 10 9 8 13 13 O 1.43105 * 109.21323 * 52.90742 * 10 9 8 14 14 C 1.42064 * 114.33394 * 298.83430 * 13 10 9 15 15 C 1.54490 * 110.37843 * 182.82970 * 14 13 10 16 16 C 1.55260 * 101.43304 * 83.75203 * 15 14 13 17 17 N 1.47478 * 104.78332 * 36.66721 * 16 15 14 18 18 C 1.36934 * 125.66515 * 155.91452 * 17 16 15 19 19 H 1.07999 * 120.00236 * 179.69146 * 18 17 16 20 20 C 1.38816 * 119.99807 * 359.70142 * 18 17 16 21 21 N 1.31618 * 119.99764 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00087 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47165 * 179.97438 * 22 20 18 24 24 H 1.48501 * 109.46968 * 299.99435 * 22 20 18 25 25 H 1.48495 * 109.47262 * 59.99538 * 22 20 18 26 26 C 1.47178 * 108.67603 * 335.65749 * 17 16 15 27 27 C 1.47304 * 121.06217 * 353.23596 * 8 6 5 28 28 O 1.33939 * 125.61410 * 180.02562 * 2 1 3 29 29 H 1.08996 * 109.47226 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46572 * 299.98314 * 1 2 3 31 31 H 1.08997 * 109.47030 * 59.98138 * 1 2 3 32 32 H 1.08001 * 126.43945 * 0.04028 * 3 2 1 33 33 H 1.07996 * 126.65138 * 180.29766 * 4 3 2 34 34 H 1.09010 * 109.62297 * 9.13511 * 9 8 6 35 35 H 1.08990 * 109.62959 * 248.56953 * 9 8 6 36 36 H 1.08997 * 109.47144 * 300.25954 * 12 10 9 37 37 H 1.08994 * 109.47445 * 60.26006 * 12 10 9 38 38 H 1.09008 * 109.47086 * 180.26117 * 12 10 9 39 39 H 1.09000 * 111.01841 * 201.99434 * 15 14 13 40 40 H 1.08999 * 111.01699 * 325.82738 * 15 14 13 41 41 H 1.08999 * 110.48975 * 277.80801 * 16 15 14 42 42 H 1.08998 * 110.32821 * 155.44709 * 16 15 14 43 43 H 0.97009 * 119.99704 * 180.02562 * 21 20 18 44 44 H 1.08995 * 109.91343 * 121.11343 * 26 17 16 45 45 H 1.09004 * 109.90647 * 242.19413 * 26 17 16 46 46 H 1.08999 * 109.67304 * 109.67563 * 27 8 6 47 47 H 1.09004 * 109.68103 * 349.13215 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2940 1.0985 0.0000 4 6 3.6251 0.6530 0.0051 5 6 3.5823 -0.7117 -0.0014 6 6 4.7414 -1.6103 -0.0023 7 8 5.8632 -1.1562 -0.1310 8 7 4.5643 -2.9389 0.1393 9 6 5.6908 -3.8747 -0.0047 10 6 5.7195 -4.7953 1.2206 11 1 5.9706 -4.2134 2.1074 12 6 6.7678 -5.8902 1.0127 13 8 4.4307 -5.3935 1.3906 14 6 3.3795 -4.4649 1.6165 15 6 2.0470 -5.2088 1.8570 16 6 2.1471 -5.5375 3.3711 17 7 2.8134 -4.3648 3.9676 18 6 2.7163 -3.9708 5.2754 19 1 3.2497 -3.0960 5.6169 20 6 1.9325 -4.6959 6.1624 21 7 1.2822 -5.7619 5.7461 22 14 1.8006 -4.1590 7.9466 23 1 0.9094 -5.0932 8.6802 24 1 3.1494 -4.1703 8.5679 25 1 1.2379 -2.7862 8.0101 26 6 3.6050 -3.6917 2.9252 27 6 3.2369 -3.5005 0.4435 28 8 2.2869 -1.0889 -0.0005 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5136 0.8902 31 1 -0.3633 0.5141 -0.8898 32 1 1.9614 2.1260 0.0006 33 1 4.5114 1.2701 0.0110 34 1 6.6251 -3.3164 -0.0650 35 1 5.5585 -4.4708 -0.9074 36 1 6.5166 -6.4697 0.1244 37 1 7.7491 -5.4339 0.8832 38 1 6.7844 -6.5471 1.8824 39 1 1.1950 -4.5616 1.6493 40 1 1.9959 -6.1212 1.2629 41 1 2.7461 -6.4345 3.5281 42 1 1.1521 -5.6658 3.7973 43 1 0.7341 -6.2684 6.3659 44 1 3.2681 -2.6615 2.8104 45 1 4.6616 -3.7090 3.1924 46 1 2.8563 -4.0349 -0.4269 47 1 2.5507 -2.6968 0.7105 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071129443.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:29 Heat of formation + Delta-G solvation = -16.397528 kcal Electronic energy + Delta-G solvation = -30823.781770 eV Core-core repulsion = 26782.042897 eV Total energy + Delta-G solvation = -4041.738873 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.85082 -40.45417 -38.70526 -36.25458 -34.89960 -33.35271 -33.14725 -32.10389 -31.35432 -29.39724 -28.25791 -28.07563 -26.14302 -25.55211 -23.78097 -22.39571 -21.68563 -21.39893 -20.39161 -19.97620 -19.04818 -17.66749 -16.98244 -16.76970 -16.61320 -15.96975 -15.76856 -15.14463 -14.80165 -14.65229 -14.15915 -13.91969 -13.80139 -13.43843 -13.35766 -13.29102 -13.19112 -13.16120 -12.81079 -12.56509 -12.25920 -12.17554 -12.08841 -11.76470 -11.59431 -11.50864 -11.06088 -10.92053 -10.85965 -10.53158 -10.47537 -10.19099 -10.14190 -10.08549 -9.81083 -9.60416 -9.58692 -8.67493 -8.64469 -8.33367 -6.84205 -5.65539 -3.07259 0.97541 2.22781 2.44668 2.89591 3.14214 3.40075 3.44282 3.45625 3.86751 4.30392 4.46866 4.63480 4.76237 4.80117 4.96751 5.07989 5.11824 5.14964 5.22952 5.24566 5.34541 5.46748 5.49285 5.50131 5.54768 5.60841 5.63701 5.69802 5.71722 5.78780 5.84858 5.99544 6.06726 6.17477 6.21954 6.27438 6.37086 6.42315 6.49798 6.57821 6.65713 6.79742 7.23006 7.55433 7.61136 7.63568 7.84172 7.94499 8.34575 9.21431 9.81361 10.46553 11.38119 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.009600 B = 0.004772 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2915.995557 B = 5866.434820 C = 7562.627081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.019 3.981 3 C -0.226 4.226 4 C -0.114 4.114 5 C -0.080 4.080 6 C 0.607 3.393 7 O -0.528 6.528 8 N -0.603 5.603 9 C 0.086 3.914 10 C 0.068 3.932 11 H 0.069 0.931 12 C -0.139 4.139 13 O -0.353 6.353 14 C 0.095 3.905 15 C -0.129 4.129 16 C 0.157 3.843 17 N -0.599 5.599 18 C -0.223 4.223 19 H 0.075 0.925 20 C -0.009 4.009 21 N -0.921 5.921 22 Si 0.914 3.086 23 H -0.289 1.289 24 H -0.286 1.286 25 H -0.285 1.285 26 C 0.122 3.878 27 C 0.085 3.915 28 O -0.154 6.154 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.155 0.845 33 H 0.159 0.841 34 H 0.101 0.899 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.018 0.982 42 H 0.109 0.891 43 H 0.253 0.747 44 H 0.024 0.976 45 H 0.025 0.975 46 H 0.077 0.923 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.244 7.448 -15.561 17.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.033 4.033 3 C -0.245 4.245 4 C -0.135 4.135 5 C -0.131 4.131 6 C 0.396 3.604 7 O -0.407 6.407 8 N -0.335 5.335 9 C -0.036 4.036 10 C 0.010 3.990 11 H 0.087 0.913 12 C -0.197 4.197 13 O -0.272 6.272 14 C 0.054 3.946 15 C -0.168 4.168 16 C 0.032 3.968 17 N -0.325 5.325 18 C -0.351 4.351 19 H 0.093 0.907 20 C -0.205 4.205 21 N -0.570 5.570 22 Si 0.745 3.255 23 H -0.215 1.215 24 H -0.212 1.212 25 H -0.212 1.212 26 C -0.004 4.004 27 C -0.037 4.037 28 O -0.051 6.051 29 H 0.100 0.900 30 H 0.110 0.890 31 H 0.107 0.893 32 H 0.173 0.827 33 H 0.176 0.824 34 H 0.119 0.881 35 H 0.095 0.905 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.036 0.964 42 H 0.126 0.874 43 H 0.064 0.936 44 H 0.042 0.958 45 H 0.043 0.957 46 H 0.095 0.905 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.620 7.091 -15.432 17.060 hybrid contribution 0.118 0.749 0.979 1.238 sum 1.738 7.840 -14.453 16.534 Atomic orbital electron populations 1.20448 0.84564 1.04790 1.03935 1.22981 0.94516 0.84473 1.01315 1.21537 0.92260 0.99781 1.10942 1.21899 0.98619 0.92769 1.00187 1.21896 0.81922 0.94449 1.14830 1.16646 0.86138 0.80907 0.76737 1.90840 1.22542 1.75508 1.51770 1.48072 1.10725 1.05349 1.69379 1.22436 0.90502 0.91529 0.99178 1.22487 0.85346 0.94719 0.96496 0.91267 1.21675 0.96584 0.98182 1.03227 1.87872 1.14789 1.32510 1.92030 1.22281 0.89752 0.89724 0.92803 1.23037 0.92455 0.99477 1.01850 1.22012 1.00839 0.88478 0.85429 1.44476 1.53589 1.28924 1.05492 1.19013 1.23930 1.08572 0.83602 0.90733 1.24761 0.99906 0.97454 0.98333 1.69773 1.34743 1.18973 1.33495 0.86157 0.77498 0.77552 0.84323 1.21480 1.21232 1.21182 1.21699 0.95524 0.94708 0.88505 1.22785 0.83669 0.98667 0.98621 1.84215 1.16060 1.34116 1.70682 0.89973 0.88990 0.89308 0.82738 0.82361 0.88118 0.90462 0.91783 0.91082 0.91127 0.90614 0.90951 0.96391 0.87359 0.93644 0.95781 0.95688 0.90493 0.87001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 10.41 36.00 0.37 -0.24 16 2 C 0.02 0.22 7.31 -35.41 -0.26 -0.04 16 3 C -0.23 -2.51 10.77 -39.89 -0.43 -2.94 16 4 C -0.11 -1.50 10.63 -39.40 -0.42 -1.92 16 5 C -0.08 -1.20 6.77 -36.79 -0.25 -1.44 16 6 C 0.61 9.96 7.67 -12.86 -0.10 9.86 16 7 O -0.53 -9.56 16.35 5.19 0.08 -9.47 16 8 N -0.60 -9.35 2.94 -174.18 -0.51 -9.87 16 9 C 0.09 1.19 5.92 -3.54 -0.02 1.17 16 10 C 0.07 1.04 3.17 -26.59 -0.08 0.95 16 11 H 0.07 1.19 6.22 -51.93 -0.32 0.87 16 12 C -0.14 -1.67 9.57 37.16 0.36 -1.31 16 13 O -0.35 -6.42 9.90 -35.23 -0.35 -6.77 16 14 C 0.10 1.75 0.80 -89.74 -0.07 1.68 16 15 C -0.13 -2.45 6.22 -24.75 -0.15 -2.60 16 16 C 0.16 3.85 5.91 -2.31 -0.01 3.84 16 17 N -0.60 -15.64 3.40 -170.09 -0.58 -16.22 16 18 C -0.22 -6.32 10.28 -15.06 -0.15 -6.47 16 19 H 0.07 2.07 7.83 -52.49 -0.41 1.65 16 20 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 21 N -0.92 -26.76 10.09 55.49 0.56 -26.20 16 22 Si 0.91 22.20 29.55 -169.99 -5.02 17.17 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 26 C 0.12 2.70 6.32 -3.32 -0.02 2.68 16 27 C 0.08 1.32 4.80 -3.85 -0.02 1.30 16 28 O -0.15 -2.15 7.30 4.96 0.04 -2.11 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.15 1.27 8.06 -52.49 -0.42 0.85 16 33 H 0.16 1.89 8.06 -52.49 -0.42 1.46 16 34 H 0.10 1.36 7.06 -51.92 -0.37 0.99 16 35 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.91 8.14 -51.92 -0.42 0.49 16 39 H 0.08 1.33 8.01 -51.93 -0.42 0.91 16 40 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.11 2.92 5.86 -51.93 -0.30 2.62 16 43 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 44 H 0.02 0.55 7.61 -51.93 -0.40 0.15 16 45 H 0.03 0.58 6.02 -51.93 -0.31 0.27 16 46 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 47 H 0.11 1.78 4.22 -52.17 -0.22 1.56 16 LS Contribution 371.58 15.07 5.60 5.60 Total: -1.00 -33.10 371.58 -8.50 -41.59 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -6.96 Total: 2.14 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: -1.36 Total: 4.13 kcal Atomic # 7 Polarization: -51.76 SS G_CDS: -0.53 Total: -52.29 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -0.23 Total: -18.35 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.10 -8.50 -41.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071129443.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.197 kcal (2) G-P(sol) polarization free energy of solvation -33.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds