Wall clock time and date at job start Tue Mar 31 2020 19:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35128 * 125.61482 * 2 1 4 4 C 1.40363 * 107.11428 * 179.97438 * 3 2 1 5 5 C 1.36536 * 106.70865 * 0.02562 * 4 3 2 6 6 C 1.46660 * 125.98743 * 179.97438 * 5 4 3 7 7 O 1.21698 * 120.00376 * 6.86502 * 6 5 4 8 8 N 1.34783 * 120.00176 * 186.86452 * 6 5 4 9 9 C 1.47153 * 121.05995 * 176.18905 * 8 6 5 10 10 C 1.52860 * 108.76458 * 231.08071 * 9 8 6 11 11 H 1.08995 * 109.36416 * 67.22762 * 10 9 8 12 12 C 1.52998 * 109.62118 * 187.30510 * 10 9 8 13 13 O 1.43099 * 109.30739 * 307.34630 * 10 9 8 14 14 C 1.42064 * 114.32528 * 61.03411 * 13 10 9 15 15 C 1.54517 * 110.33698 * 61.93429 * 14 13 10 16 16 C 1.55014 * 101.51919 * 83.94712 * 15 14 13 17 17 N 1.47484 * 104.90407 * 36.37263 * 16 15 14 18 18 C 1.36940 * 125.66074 * 155.95609 * 17 16 15 19 19 H 1.08002 * 119.99918 * 180.02562 * 18 17 16 20 20 C 1.38812 * 120.00363 * 0.02666 * 18 17 16 21 21 N 1.31622 * 119.99444 * 0.02562 * 20 18 17 22 22 Si 1.86792 * 120.00052 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47431 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47042 * 120.00217 * 22 20 18 25 25 H 1.48499 * 109.47211 * 240.00160 * 22 20 18 26 26 C 1.47181 * 108.67476 * 335.98174 * 17 16 15 27 27 C 1.47303 * 121.05619 * 356.46527 * 8 6 5 28 28 O 1.33933 * 125.62044 * 180.24549 * 2 1 3 29 29 H 1.09000 * 109.47148 * 89.99851 * 1 2 3 30 30 H 1.09003 * 109.46719 * 210.00142 * 1 2 3 31 31 H 1.09006 * 109.47243 * 329.99527 * 1 2 3 32 32 H 1.08005 * 126.44275 * 359.96785 * 3 2 1 33 33 H 1.08000 * 126.64613 * 180.02562 * 4 3 2 34 34 H 1.09003 * 109.62694 * 350.85088 * 9 8 6 35 35 H 1.08995 * 109.62883 * 111.42158 * 9 8 6 36 36 H 1.09001 * 109.47111 * 179.91616 * 12 10 9 37 37 H 1.09002 * 109.46796 * 299.91867 * 12 10 9 38 38 H 1.08998 * 109.47035 * 59.91269 * 12 10 9 39 39 H 1.09001 * 111.01426 * 202.00132 * 15 14 13 40 40 H 1.08999 * 111.01993 * 325.88704 * 15 14 13 41 41 H 1.09005 * 110.35886 * 155.23221 * 16 15 14 42 42 H 1.09000 * 110.35409 * 277.41123 * 16 15 14 43 43 H 0.97006 * 119.99528 * 179.97438 * 21 20 18 44 44 H 1.09003 * 109.91055 * 242.13491 * 26 17 16 45 45 H 1.09002 * 109.91191 * 120.86973 * 26 17 16 46 46 H 1.08997 * 109.68703 * 250.31185 * 27 8 6 47 47 H 1.09005 * 109.68333 * 10.86600 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0985 0.0000 4 6 3.6250 0.6531 0.0006 5 6 3.5823 -0.7116 0.0004 6 6 4.7414 -1.6100 0.0003 7 8 5.8634 -1.1559 0.1264 8 7 4.5642 -2.9388 -0.1395 9 6 5.7139 -3.8532 -0.2262 10 6 5.5390 -4.7482 -1.4529 11 1 5.6185 -4.1431 -2.3560 12 6 6.6254 -5.8254 -1.4622 13 8 4.2506 -5.3692 -1.4057 14 6 3.1609 -4.4579 -1.4190 15 6 3.1621 -3.6385 -2.7291 16 6 2.4253 -4.6000 -3.6963 17 7 1.3939 -5.2534 -2.8690 18 6 0.2321 -5.8098 -3.3337 19 1 -0.4619 -6.2662 -2.6434 20 6 -0.0537 -5.7872 -4.6919 21 7 0.7924 -5.2314 -5.5332 22 14 -1.6381 -6.5467 -5.3257 23 1 -2.4112 -7.1025 -4.1861 24 1 -2.4463 -5.5063 -6.0110 25 1 -1.3168 -7.6347 -6.2839 26 6 1.8204 -5.2078 -1.4611 27 6 3.2134 -3.5213 -0.2164 28 8 2.2870 -1.0887 -0.0047 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5139 32 1 1.9612 2.1260 -0.0005 33 1 4.5112 1.2703 0.0011 34 1 6.6338 -3.2765 -0.3234 35 1 5.7589 -4.4709 0.6707 36 1 6.4975 -6.4630 -2.3369 37 1 7.6064 -5.3516 -1.4981 38 1 6.5464 -6.4289 -0.5579 39 1 2.6094 -2.7068 -2.6079 40 1 4.1797 -3.4461 -3.0689 41 1 1.9614 -4.0395 -4.5079 42 1 3.1184 -5.3404 -4.0957 43 1 0.5929 -5.2160 -6.4824 44 1 1.9494 -6.2205 -1.0793 45 1 1.0785 -4.6756 -0.8656 46 1 3.0028 -4.0816 0.6945 47 1 2.4772 -2.7266 -0.3376 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071129444.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:34 Heat of formation + Delta-G solvation = -12.898424 kcal Electronic energy + Delta-G solvation = -30845.955721 eV Core-core repulsion = 26804.368581 eV Total energy + Delta-G solvation = -4041.587141 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.87255 -40.48569 -38.73911 -36.29488 -34.93104 -33.37119 -33.10664 -32.08946 -31.38721 -29.30482 -28.49699 -28.10005 -26.10434 -25.54044 -23.75168 -22.44729 -21.72254 -21.43407 -20.29443 -19.96483 -19.18019 -17.69114 -17.07394 -16.73217 -16.62366 -15.91030 -15.81367 -15.15776 -14.77229 -14.70622 -14.26073 -14.10304 -13.60025 -13.43612 -13.36945 -13.29420 -13.17037 -13.09286 -12.84235 -12.53711 -12.32595 -12.21623 -12.12084 -11.75649 -11.61296 -11.50938 -11.04785 -10.92029 -10.90170 -10.57194 -10.43474 -10.14810 -10.09818 -10.05305 -9.93162 -9.63294 -9.54539 -8.69539 -8.64344 -8.34624 -6.85464 -5.66258 -3.08196 0.96886 2.22890 2.41304 2.88139 3.11548 3.38748 3.44071 3.46846 3.84629 4.29439 4.46570 4.63208 4.73649 4.78872 4.96367 5.06036 5.08890 5.16009 5.20949 5.30581 5.32536 5.44299 5.47339 5.50571 5.52786 5.59943 5.65142 5.70402 5.73511 5.76539 5.85826 5.99325 6.02023 6.17095 6.19223 6.27367 6.39319 6.46191 6.49713 6.58185 6.64966 6.80209 7.20978 7.52672 7.59336 7.64194 7.83970 7.92173 8.33173 9.20033 9.80478 10.45477 11.37819 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.010506 B = 0.004646 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2664.487223 B = 6024.904951 C = 8062.670913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.021 3.979 3 C -0.227 4.227 4 C -0.114 4.114 5 C -0.082 4.082 6 C 0.606 3.394 7 O -0.530 6.530 8 N -0.601 5.601 9 C 0.085 3.915 10 C 0.068 3.932 11 H 0.067 0.933 12 C -0.140 4.140 13 O -0.352 6.352 14 C 0.097 3.903 15 C -0.166 4.166 16 C 0.161 3.839 17 N -0.600 5.600 18 C -0.220 4.220 19 H 0.079 0.921 20 C -0.011 4.011 21 N -0.922 5.922 22 Si 0.915 3.085 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.155 3.845 27 C 0.077 3.923 28 O -0.152 6.152 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.155 0.845 33 H 0.158 0.842 34 H 0.100 0.900 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.106 0.894 42 H 0.015 0.985 43 H 0.251 0.749 44 H 0.037 0.963 45 H 0.039 0.961 46 H 0.076 0.924 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.547 9.431 12.315 16.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.031 4.031 3 C -0.246 4.246 4 C -0.134 4.134 5 C -0.133 4.133 6 C 0.395 3.605 7 O -0.409 6.409 8 N -0.332 5.332 9 C -0.037 4.037 10 C 0.010 3.990 11 H 0.085 0.915 12 C -0.197 4.197 13 O -0.271 6.271 14 C 0.056 3.944 15 C -0.205 4.205 16 C 0.036 3.964 17 N -0.327 5.327 18 C -0.349 4.349 19 H 0.097 0.903 20 C -0.206 4.206 21 N -0.570 5.570 22 Si 0.745 3.255 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 C 0.028 3.972 27 C -0.045 4.045 28 O -0.049 6.049 29 H 0.109 0.891 30 H 0.101 0.899 31 H 0.109 0.891 32 H 0.172 0.828 33 H 0.176 0.824 34 H 0.118 0.882 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.124 0.876 42 H 0.033 0.967 43 H 0.062 0.938 44 H 0.055 0.945 45 H 0.056 0.944 46 H 0.095 0.905 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 5.912 9.095 12.202 16.327 hybrid contribution -0.656 0.007 -0.391 0.764 sum 5.257 9.102 11.812 15.811 Atomic orbital electron populations 1.20471 0.84532 1.04407 1.04486 1.23062 0.94596 0.84556 1.00850 1.21546 0.92235 0.99723 1.11142 1.21884 0.98599 0.92731 1.00222 1.21901 0.81946 0.94435 1.14993 1.16661 0.86186 0.80850 0.76772 1.90840 1.22663 1.75654 1.51725 1.48054 1.08316 1.05618 1.71222 1.22350 0.89619 0.92159 0.99557 1.22404 0.85293 0.94669 0.96642 0.91508 1.21682 0.96156 0.98335 1.03565 1.87912 1.12462 1.32444 1.94292 1.22261 0.88656 0.89923 0.93573 1.23506 1.00620 0.99411 0.96915 1.21876 0.88966 0.92551 0.92999 1.44498 1.20517 1.67830 0.99840 1.19112 0.94553 1.29713 0.91484 0.90304 1.24785 0.98754 1.01309 0.95788 1.69820 1.35636 1.49455 1.02120 0.85994 0.82449 0.78380 0.78647 1.20488 1.21778 1.21759 1.21044 0.89308 0.97472 0.89358 1.22907 0.83281 0.98813 0.99463 1.84190 1.16076 1.33705 1.70930 0.89093 0.89916 0.89081 0.82757 0.82395 0.88181 0.90449 0.91082 0.91086 0.91714 0.91646 0.92066 0.87647 0.96711 0.93783 0.94478 0.94364 0.90541 0.86266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.68 10.41 36.00 0.37 -0.31 16 2 C 0.02 0.25 7.31 -35.42 -0.26 -0.01 16 3 C -0.23 -2.49 10.77 -39.89 -0.43 -2.92 16 4 C -0.11 -1.45 10.63 -39.40 -0.42 -1.87 16 5 C -0.08 -1.20 6.86 -36.80 -0.25 -1.45 16 6 C 0.61 9.64 7.68 -12.86 -0.10 9.54 16 7 O -0.53 -9.29 16.36 5.19 0.08 -9.21 16 8 N -0.60 -9.07 2.92 -174.43 -0.51 -9.58 16 9 C 0.09 1.15 5.87 -3.76 -0.02 1.13 16 10 C 0.07 1.00 3.16 -26.80 -0.08 0.91 16 11 H 0.07 1.05 6.13 -51.93 -0.32 0.73 16 12 C -0.14 -1.62 9.57 37.16 0.36 -1.27 16 13 O -0.35 -6.37 9.87 -35.23 -0.35 -6.72 16 14 C 0.10 1.76 0.83 -89.73 -0.07 1.69 16 15 C -0.17 -3.30 5.91 -24.87 -0.15 -3.45 16 16 C 0.16 3.99 5.89 -2.44 -0.01 3.97 16 17 N -0.60 -15.35 3.40 -170.24 -0.58 -15.93 16 18 C -0.22 -6.07 10.28 -15.06 -0.15 -6.23 16 19 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 20 C -0.01 -0.31 5.49 -17.43 -0.10 -0.40 16 21 N -0.92 -26.82 10.09 55.49 0.56 -26.26 16 22 Si 0.91 21.84 29.55 -169.99 -5.02 16.81 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 C 0.15 3.24 6.61 -3.33 -0.02 3.22 16 27 C 0.08 1.20 5.01 -3.85 -0.02 1.18 16 28 O -0.15 -2.13 7.11 5.01 0.04 -2.09 16 29 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.15 1.25 8.06 -52.48 -0.42 0.82 16 33 H 0.16 1.81 8.06 -52.49 -0.42 1.38 16 34 H 0.10 1.31 7.10 -51.93 -0.37 0.94 16 35 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 1.30 7.86 -51.93 -0.41 0.89 16 40 H 0.06 1.16 5.98 -51.93 -0.31 0.85 16 41 H 0.11 2.92 5.88 -51.93 -0.31 2.61 16 42 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 44 H 0.04 0.80 8.06 -51.93 -0.42 0.38 16 45 H 0.04 0.75 7.79 -51.93 -0.40 0.35 16 46 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 47 H 0.12 1.86 3.75 -54.50 -0.20 1.66 16 LS Contribution 370.99 15.07 5.59 5.59 Total: -1.00 -32.56 370.99 -8.49 -41.04 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -6.94 Total: 2.61 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: -1.36 Total: 3.74 kcal Atomic # 7 Polarization: -51.24 SS G_CDS: -0.53 Total: -51.77 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -0.23 Total: -18.02 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.56 -8.49 -41.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071129444.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.142 kcal (2) G-P(sol) polarization free energy of solvation -32.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds