Wall clock time and date at job start Tue Mar 31 2020 19:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35128 * 125.61482 * 2 1 4 4 C 1.40363 * 107.11428 * 179.97438 * 3 2 1 5 5 C 1.36536 * 106.70865 * 0.02562 * 4 3 2 6 6 C 1.46660 * 125.98743 * 179.97438 * 5 4 3 7 7 O 1.21698 * 120.00376 * 6.86502 * 6 5 4 8 8 N 1.34783 * 120.00176 * 186.86452 * 6 5 4 9 9 C 1.47153 * 121.05995 * 176.18905 * 8 6 5 10 10 C 1.52860 * 108.76458 * 231.08071 * 9 8 6 11 11 H 1.08995 * 109.36416 * 67.22762 * 10 9 8 12 12 C 1.52998 * 109.62118 * 187.30510 * 10 9 8 13 13 O 1.43099 * 109.30739 * 307.34630 * 10 9 8 14 14 C 1.42064 * 114.32528 * 61.03411 * 13 10 9 15 15 C 1.54517 * 110.33698 * 61.93429 * 14 13 10 16 16 C 1.55014 * 101.51919 * 83.94712 * 15 14 13 17 17 N 1.47484 * 104.90407 * 36.37263 * 16 15 14 18 18 C 1.36940 * 125.66074 * 155.95609 * 17 16 15 19 19 H 1.08002 * 119.99918 * 180.02562 * 18 17 16 20 20 C 1.38812 * 120.00363 * 0.02666 * 18 17 16 21 21 N 1.31622 * 119.99444 * 0.02562 * 20 18 17 22 22 Si 1.86792 * 120.00052 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47431 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47042 * 120.00217 * 22 20 18 25 25 H 1.48499 * 109.47211 * 240.00160 * 22 20 18 26 26 C 1.47181 * 108.67476 * 335.98174 * 17 16 15 27 27 C 1.47303 * 121.05619 * 356.46527 * 8 6 5 28 28 O 1.33933 * 125.62044 * 180.24549 * 2 1 3 29 29 H 1.09000 * 109.47148 * 89.99851 * 1 2 3 30 30 H 1.09003 * 109.46719 * 210.00142 * 1 2 3 31 31 H 1.09006 * 109.47243 * 329.99527 * 1 2 3 32 32 H 1.08005 * 126.44275 * 359.96785 * 3 2 1 33 33 H 1.08000 * 126.64613 * 180.02562 * 4 3 2 34 34 H 1.09003 * 109.62694 * 350.85088 * 9 8 6 35 35 H 1.08995 * 109.62883 * 111.42158 * 9 8 6 36 36 H 1.09001 * 109.47111 * 179.91616 * 12 10 9 37 37 H 1.09002 * 109.46796 * 299.91867 * 12 10 9 38 38 H 1.08998 * 109.47035 * 59.91269 * 12 10 9 39 39 H 1.09001 * 111.01426 * 202.00132 * 15 14 13 40 40 H 1.08999 * 111.01993 * 325.88704 * 15 14 13 41 41 H 1.09005 * 110.35886 * 155.23221 * 16 15 14 42 42 H 1.09000 * 110.35409 * 277.41123 * 16 15 14 43 43 H 0.97006 * 119.99528 * 179.97438 * 21 20 18 44 44 H 1.09003 * 109.91055 * 242.13491 * 26 17 16 45 45 H 1.09002 * 109.91191 * 120.86973 * 26 17 16 46 46 H 1.08997 * 109.68703 * 250.31185 * 27 8 6 47 47 H 1.09005 * 109.68333 * 10.86600 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0985 0.0000 4 6 3.6250 0.6531 0.0006 5 6 3.5823 -0.7116 0.0004 6 6 4.7414 -1.6100 0.0003 7 8 5.8634 -1.1559 0.1264 8 7 4.5642 -2.9388 -0.1395 9 6 5.7139 -3.8532 -0.2262 10 6 5.5390 -4.7482 -1.4529 11 1 5.6185 -4.1431 -2.3560 12 6 6.6254 -5.8254 -1.4622 13 8 4.2506 -5.3692 -1.4057 14 6 3.1609 -4.4579 -1.4190 15 6 3.1621 -3.6385 -2.7291 16 6 2.4253 -4.6000 -3.6963 17 7 1.3939 -5.2534 -2.8690 18 6 0.2321 -5.8098 -3.3337 19 1 -0.4619 -6.2662 -2.6434 20 6 -0.0537 -5.7872 -4.6919 21 7 0.7924 -5.2314 -5.5332 22 14 -1.6381 -6.5467 -5.3257 23 1 -2.4112 -7.1025 -4.1861 24 1 -2.4463 -5.5063 -6.0110 25 1 -1.3168 -7.6347 -6.2839 26 6 1.8204 -5.2078 -1.4611 27 6 3.2134 -3.5213 -0.2164 28 8 2.2870 -1.0887 -0.0047 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5139 32 1 1.9612 2.1260 -0.0005 33 1 4.5112 1.2703 0.0011 34 1 6.6338 -3.2765 -0.3234 35 1 5.7589 -4.4709 0.6707 36 1 6.4975 -6.4630 -2.3369 37 1 7.6064 -5.3516 -1.4981 38 1 6.5464 -6.4289 -0.5579 39 1 2.6094 -2.7068 -2.6079 40 1 4.1797 -3.4461 -3.0689 41 1 1.9614 -4.0395 -4.5079 42 1 3.1184 -5.3404 -4.0957 43 1 0.5929 -5.2160 -6.4824 44 1 1.9494 -6.2205 -1.0793 45 1 1.0785 -4.6756 -0.8656 46 1 3.0028 -4.0816 0.6945 47 1 2.4772 -2.7266 -0.3376 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071129444.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:33 Heat of formation + Delta-G solvation = -33.147271 kcal Electronic energy + Delta-G solvation = -30846.833777 eV Core-core repulsion = 26804.368581 eV Total energy + Delta-G solvation = -4042.465197 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.83591 -41.79139 -40.06985 -37.93919 -36.15458 -34.81833 -34.26624 -33.16749 -32.79678 -31.08646 -30.05457 -29.04338 -27.54413 -26.82489 -25.48765 -23.55130 -22.89236 -22.51155 -21.95484 -21.19409 -20.55129 -19.01759 -18.87071 -17.95383 -17.68668 -17.22455 -16.87340 -16.83755 -16.34221 -15.88671 -15.72464 -15.58384 -14.98117 -14.85040 -14.53738 -14.25736 -14.21310 -14.04509 -14.03280 -13.75399 -13.71123 -13.54051 -13.19167 -12.98993 -12.91670 -12.85392 -12.78698 -12.63799 -12.30403 -12.23223 -11.95498 -11.89447 -11.78060 -11.53293 -11.26528 -11.06595 -10.99381 -10.76042 -9.80586 -9.41955 -8.92299 -7.77477 -5.22628 -0.06093 1.31870 1.40101 1.48432 1.49686 1.60126 1.80786 2.00209 2.45874 2.58565 3.24705 3.32953 3.41390 3.58851 3.72896 3.75798 3.83234 3.89546 3.95647 4.00603 4.16295 4.25857 4.37575 4.44665 4.46963 4.52602 4.63727 4.65997 4.67653 4.72147 4.76879 4.79980 4.84877 4.88788 4.91953 5.02834 5.05613 5.11191 5.21278 5.28978 5.45141 5.48383 5.53813 5.73590 5.82011 6.07036 6.25138 6.27595 6.75338 7.08395 7.74747 8.39694 9.25574 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.010506 B = 0.004646 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2664.487223 B = 6024.904951 C = 8062.670913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.018 3.982 3 C -0.226 4.226 4 C -0.110 4.110 5 C -0.116 4.116 6 C 0.605 3.395 7 O -0.554 6.554 8 N -0.602 5.602 9 C 0.088 3.912 10 C 0.065 3.935 11 H 0.051 0.949 12 C -0.134 4.134 13 O -0.372 6.372 14 C 0.108 3.892 15 C -0.148 4.148 16 C 0.169 3.831 17 N -0.620 5.620 18 C -0.234 4.234 19 H 0.088 0.912 20 C -0.068 4.068 21 N -0.953 5.953 22 Si 0.982 3.018 23 H -0.263 1.263 24 H -0.290 1.290 25 H -0.296 1.296 26 C 0.150 3.850 27 C 0.088 3.912 28 O -0.167 6.167 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.121 0.879 32 H 0.186 0.814 33 H 0.167 0.833 34 H 0.106 0.894 35 H 0.096 0.904 36 H 0.058 0.942 37 H 0.098 0.902 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.074 0.926 42 H -0.020 1.020 43 H 0.246 0.754 44 H 0.033 0.967 45 H 0.059 0.941 46 H 0.095 0.905 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.866 10.305 14.176 18.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.033 4.033 3 C -0.245 4.245 4 C -0.131 4.131 5 C -0.167 4.167 6 C 0.395 3.605 7 O -0.435 6.435 8 N -0.333 5.333 9 C -0.034 4.034 10 C 0.007 3.993 11 H 0.069 0.931 12 C -0.191 4.191 13 O -0.292 6.292 14 C 0.068 3.932 15 C -0.187 4.187 16 C 0.044 3.956 17 N -0.346 5.346 18 C -0.363 4.363 19 H 0.105 0.895 20 C -0.260 4.260 21 N -0.603 5.603 22 Si 0.811 3.189 23 H -0.187 1.187 24 H -0.217 1.217 25 H -0.223 1.223 26 C 0.024 3.976 27 C -0.034 4.034 28 O -0.065 6.065 29 H 0.110 0.890 30 H 0.103 0.897 31 H 0.140 0.860 32 H 0.203 0.797 33 H 0.185 0.815 34 H 0.125 0.875 35 H 0.114 0.886 36 H 0.077 0.923 37 H 0.117 0.883 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.092 0.908 42 H -0.002 1.002 43 H 0.056 0.944 44 H 0.051 0.949 45 H 0.076 0.924 46 H 0.113 0.887 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.237 9.961 14.102 18.041 hybrid contribution -0.447 -0.233 -0.969 1.093 sum 4.790 9.727 13.132 17.030 Atomic orbital electron populations 1.20671 0.82230 1.06054 1.04943 1.23812 0.95919 0.84183 0.99429 1.21917 0.91148 1.01099 1.10327 1.22201 0.99933 0.92284 0.98665 1.21808 0.82067 0.94906 1.17921 1.16831 0.86376 0.81021 0.76254 1.90812 1.23618 1.76008 1.53057 1.48099 1.08442 1.05744 1.71035 1.22420 0.89414 0.91935 0.99606 1.22627 0.84450 0.95648 0.96609 0.93111 1.21701 0.96312 0.97588 1.03533 1.87885 1.13660 1.33242 1.94386 1.22034 0.87880 0.89576 0.93753 1.23277 1.00151 0.98402 0.96876 1.21547 0.88440 0.92153 0.93474 1.44760 1.20183 1.67797 1.01875 1.19531 0.95353 1.29438 0.91976 0.89462 1.25656 1.02022 1.02210 0.96095 1.70075 1.37437 1.50788 1.01961 0.84945 0.78739 0.77158 0.78097 1.18692 1.21664 1.22340 1.21214 0.91322 0.97903 0.87112 1.22756 0.83803 0.98324 0.98561 1.84118 1.16003 1.34902 1.71453 0.89044 0.89715 0.86041 0.79685 0.81534 0.87548 0.88599 0.92307 0.88331 0.90597 0.91482 0.91416 0.90830 1.00210 0.94395 0.94885 0.92352 0.88710 0.86088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.15 10.41 71.24 0.74 -0.40 16 2 C 0.02 0.38 7.31 24.97 0.18 0.57 16 3 C -0.23 -4.38 10.77 22.07 0.24 -4.14 16 4 C -0.11 -2.65 10.63 22.39 0.24 -2.41 16 5 C -0.12 -3.30 6.86 24.07 0.17 -3.13 16 6 C 0.60 18.76 7.68 86.44 0.66 19.43 16 7 O -0.55 -19.09 16.36 -4.34 -0.07 -19.16 16 8 N -0.60 -17.48 2.92 -824.00 -2.40 -19.88 16 9 C 0.09 2.24 5.87 86.21 0.51 2.74 16 10 C 0.06 1.83 3.16 30.55 0.10 1.93 16 11 H 0.05 1.60 6.13 -2.39 -0.01 1.58 16 12 C -0.13 -2.92 9.57 71.98 0.69 -2.23 16 13 O -0.37 -13.34 9.87 -148.97 -1.47 -14.81 16 14 C 0.11 3.92 0.83 -10.22 -0.01 3.91 16 15 C -0.15 -6.02 5.91 31.80 0.19 -5.83 16 16 C 0.17 8.74 5.89 86.88 0.51 9.26 16 17 N -0.62 -32.28 3.40 -692.51 -2.36 -34.64 16 18 C -0.23 -13.04 10.28 84.03 0.86 -12.17 16 19 H 0.09 4.58 7.83 -2.91 -0.02 4.56 16 20 C -0.07 -3.83 5.49 84.86 0.47 -3.36 16 21 N -0.95 -57.35 10.09 21.65 0.22 -57.13 16 22 Si 0.98 45.27 29.55 68.60 2.03 47.30 16 23 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 24 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 25 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 26 C 0.15 6.23 6.61 86.47 0.57 6.81 16 27 C 0.09 2.59 5.01 86.07 0.43 3.02 16 28 O -0.17 -4.46 7.11 -4.97 -0.04 -4.49 16 29 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.08 1.15 8.14 -2.39 -0.02 1.14 16 31 H 0.12 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.19 2.30 8.06 -2.91 -0.02 2.28 16 33 H 0.17 3.58 8.06 -2.91 -0.02 3.56 16 34 H 0.11 2.61 7.10 -2.39 -0.02 2.59 16 35 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.07 2.69 7.86 -2.39 -0.02 2.67 16 40 H 0.07 2.64 5.98 -2.39 -0.01 2.62 16 41 H 0.07 4.29 5.88 -2.38 -0.01 4.27 16 42 H -0.02 -1.15 8.14 -2.39 -0.02 -1.17 16 43 H 0.25 14.37 8.31 -92.70 -0.77 13.60 16 44 H 0.03 1.41 8.06 -2.39 -0.02 1.39 16 45 H 0.06 2.20 7.79 -2.39 -0.02 2.19 16 46 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 47 H 0.12 3.64 3.75 -43.17 -0.16 3.47 16 Total: -1.00 -72.34 370.99 3.28 -69.07 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: 0.83 Total: 19.79 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: 6.54 Total: 13.97 kcal Atomic # 7 Polarization: -107.11 SS G_CDS: -4.54 Total: -111.65 kcal Atomic # 8 Polarization: -36.89 SS G_CDS: -1.58 Total: -38.46 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -72.34 3.28 -69.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071129444.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.918 kcal (2) G-P(sol) polarization free energy of solvation -72.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds