Wall clock time and date at job start Tue Mar 31 2020 19:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35122 * 125.61983 * 2 1 4 4 C 1.40359 * 107.11826 * 180.02562 * 3 2 1 5 5 C 1.36541 * 106.70945 * 359.97438 * 4 3 2 6 6 C 1.46651 * 125.99321 * 179.97438 * 5 4 3 7 7 O 1.21701 * 119.99971 * 353.19186 * 6 5 4 8 8 N 1.34774 * 120.00653 * 173.19403 * 6 5 4 9 9 C 1.47160 * 121.08138 * 173.17500 * 8 6 5 10 10 C 1.53270 * 108.57381 * 128.76383 * 9 8 6 11 11 H 1.08995 * 109.51341 * 293.00176 * 10 9 8 12 12 C 1.53002 * 109.51370 * 172.90500 * 10 9 8 13 13 O 1.43125 * 109.23380 * 52.97894 * 10 9 8 14 14 C 1.41886 * 114.36342 * 299.11022 * 13 10 9 15 15 C 1.54376 * 110.71475 * 296.73596 * 14 13 10 16 16 C 1.54469 * 102.86617 * 276.30097 * 15 14 13 17 17 N 1.47088 * 107.29587 * 338.49773 * 16 15 14 18 18 C 1.36933 * 125.62925 * 179.02486 * 17 16 15 19 19 H 1.08001 * 120.00214 * 187.10343 * 18 17 16 20 20 C 1.38813 * 119.99968 * 7.10073 * 18 17 16 21 21 N 1.31616 * 120.00006 * 8.07005 * 20 18 17 22 22 Si 1.86801 * 120.00014 * 188.07704 * 20 18 17 23 23 H 1.48501 * 109.47284 * 84.98598 * 22 20 18 24 24 H 1.48504 * 109.47155 * 204.98688 * 22 20 18 25 25 H 1.48501 * 109.46992 * 324.98335 * 22 20 18 26 26 C 1.47576 * 108.74008 * 359.02121 * 17 16 15 27 27 C 1.47336 * 121.07199 * 353.15055 * 8 6 5 28 28 O 1.33930 * 125.61380 * 180.29377 * 2 1 3 29 29 H 1.08999 * 109.47357 * 90.00349 * 1 2 3 30 30 H 1.09001 * 109.47194 * 209.99802 * 1 2 3 31 31 H 1.08997 * 109.46774 * 329.99928 * 1 2 3 32 32 H 1.08006 * 126.43920 * 0.02562 * 3 2 1 33 33 H 1.08007 * 126.64875 * 179.97438 * 4 3 2 34 34 H 1.08997 * 109.61963 * 9.03775 * 9 8 6 35 35 H 1.09005 * 109.77109 * 248.57851 * 9 8 6 36 36 H 1.09001 * 109.47108 * 59.99825 * 12 10 9 37 37 H 1.08997 * 109.46931 * 299.99853 * 12 10 9 38 38 H 1.09006 * 109.47275 * 180.02562 * 12 10 9 39 39 H 1.09001 * 110.73195 * 34.64442 * 15 14 13 40 40 H 1.08997 * 110.73362 * 157.95816 * 15 14 13 41 41 H 1.09002 * 109.87652 * 97.92173 * 16 15 14 42 42 H 1.08992 * 109.87331 * 219.07269 * 16 15 14 43 43 H 0.97005 * 119.99975 * 179.97438 * 21 20 18 44 44 H 1.08991 * 110.38043 * 264.47316 * 26 17 16 45 45 H 1.09008 * 110.37214 * 142.12766 * 26 17 16 46 46 H 1.08995 * 109.68075 * 348.93416 * 27 8 6 47 47 H 1.08997 * 109.67768 * 109.48209 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2940 1.0984 0.0000 4 6 3.6250 0.6530 -0.0006 5 6 3.5823 -0.7117 -0.0004 6 6 4.7413 -1.6103 -0.0013 7 8 5.8633 -1.1560 -0.1274 8 7 4.5641 -2.9391 0.1374 9 6 5.6902 -3.8751 -0.0085 10 6 5.7204 -4.7971 1.2155 11 1 5.9723 -4.2163 2.1027 12 6 6.7697 -5.8907 1.0058 13 8 4.4321 -5.3971 1.3856 14 6 3.3799 -4.4714 1.6069 15 6 3.6010 -3.6982 2.9246 16 6 3.0240 -4.6587 3.9880 17 7 2.0949 -5.5670 3.2986 18 6 1.3888 -6.5825 3.8863 19 1 0.8193 -7.2678 3.2761 20 6 1.4051 -6.7310 5.2663 21 7 1.9647 -5.8092 6.0209 22 14 0.6329 -8.2394 6.0525 23 1 1.6178 -9.3508 6.0636 24 1 0.2309 -7.9203 7.4460 25 1 -0.5637 -8.6461 5.2729 26 6 2.0494 -5.2033 1.8691 27 6 3.2365 -3.5016 0.4404 28 8 2.2869 -1.0888 -0.0056 29 1 -0.3634 -0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.9613 2.1260 0.0004 33 1 4.5114 1.2702 -0.0011 34 1 6.6245 -3.3169 -0.0693 35 1 5.5601 -4.4705 -0.9122 36 1 7.7498 -5.4330 0.8720 37 1 6.5162 -6.4723 0.1194 38 1 6.7902 -6.5464 1.8764 39 1 4.6633 -3.5250 3.0969 40 1 3.0518 -2.7567 2.9164 41 1 3.8302 -5.2312 4.4467 42 1 2.4902 -4.0906 4.7497 43 1 1.9757 -5.9129 6.9853 44 1 1.2066 -4.5406 1.6727 45 1 1.9809 -6.0990 1.2516 46 1 2.5511 -2.6990 0.7126 47 1 2.8543 -4.0312 -0.4322 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071129446.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:42 Heat of formation + Delta-G solvation = -17.596398 kcal Electronic energy + Delta-G solvation = -30678.605095 eV Core-core repulsion = 26636.814234 eV Total energy + Delta-G solvation = -4041.790860 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.90979 -40.47524 -38.74022 -36.27650 -34.91759 -33.39340 -33.07698 -32.15041 -31.37211 -29.34189 -28.51055 -28.12195 -26.11407 -25.51344 -23.74237 -22.43462 -21.73827 -21.44881 -20.30271 -20.01418 -19.15978 -17.73129 -17.03709 -16.82740 -16.59508 -15.88590 -15.79956 -15.18957 -14.74010 -14.64110 -14.18763 -14.09312 -13.67613 -13.47404 -13.40300 -13.34694 -13.26596 -13.14395 -12.89101 -12.53370 -12.25815 -12.16155 -12.01339 -11.97056 -11.70508 -11.58154 -11.01208 -10.92254 -10.83660 -10.53778 -10.30630 -10.21725 -10.12755 -10.10397 -9.95567 -9.65187 -9.55717 -8.72080 -8.59799 -8.36415 -6.80696 -5.68202 -3.04001 0.91817 2.17242 2.39274 2.85442 3.08896 3.42200 3.47137 3.48530 3.87139 4.25662 4.49662 4.58825 4.73979 4.75039 4.94717 5.05488 5.09690 5.11920 5.19446 5.20660 5.30108 5.44056 5.47008 5.47998 5.52446 5.61015 5.64104 5.66862 5.71316 5.78026 5.83084 5.94688 6.03913 6.11889 6.18169 6.22444 6.34171 6.43231 6.45746 6.52256 6.61638 6.74835 7.19251 7.49526 7.66338 7.66911 7.82335 7.90079 8.27037 9.22053 9.83065 10.48881 11.41912 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012081 B = 0.004094 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.167646 B = 6837.274867 C = 8482.973916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.019 3.981 3 C -0.226 4.226 4 C -0.115 4.115 5 C -0.079 4.079 6 C 0.606 3.394 7 O -0.528 6.528 8 N -0.602 5.602 9 C 0.085 3.915 10 C 0.069 3.931 11 H 0.066 0.934 12 C -0.140 4.140 13 O -0.344 6.344 14 C 0.093 3.907 15 C -0.165 4.165 16 C 0.180 3.820 17 N -0.597 5.597 18 C -0.226 4.226 19 H 0.078 0.922 20 C -0.007 4.007 21 N -0.920 5.920 22 Si 0.911 3.089 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.154 3.846 27 C 0.084 3.916 28 O -0.154 6.154 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.155 0.845 33 H 0.159 0.841 34 H 0.100 0.900 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.030 0.970 42 H 0.061 0.939 43 H 0.252 0.748 44 H 0.036 0.964 45 H 0.051 0.949 46 H 0.111 0.889 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.262 11.317 -14.344 18.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.033 4.033 3 C -0.245 4.245 4 C -0.136 4.136 5 C -0.131 4.131 6 C 0.395 3.605 7 O -0.407 6.407 8 N -0.333 5.333 9 C -0.037 4.037 10 C 0.010 3.990 11 H 0.084 0.916 12 C -0.197 4.197 13 O -0.263 6.263 14 C 0.052 3.948 15 C -0.204 4.204 16 C 0.056 3.944 17 N -0.323 5.323 18 C -0.354 4.354 19 H 0.096 0.904 20 C -0.203 4.203 21 N -0.567 5.567 22 Si 0.742 3.258 23 H -0.216 1.216 24 H -0.218 1.218 25 H -0.207 1.207 26 C 0.027 3.973 27 C -0.038 4.038 28 O -0.051 6.051 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.111 0.889 32 H 0.173 0.827 33 H 0.177 0.823 34 H 0.118 0.882 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.048 0.952 42 H 0.079 0.921 43 H 0.062 0.938 44 H 0.053 0.947 45 H 0.070 0.930 46 H 0.129 0.871 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.691 10.946 -14.193 18.124 hybrid contribution -0.252 -0.266 0.529 0.644 sum 2.439 10.680 -13.664 17.513 Atomic orbital electron populations 1.20456 0.84528 1.04905 1.03913 1.22990 0.94530 0.84466 1.01334 1.21560 0.92257 0.99767 1.10906 1.21908 0.98632 0.92786 1.00232 1.21908 0.81926 0.94432 1.14807 1.16636 0.86126 0.80904 0.76825 1.90845 1.22531 1.75522 1.51827 1.48050 1.10729 1.05284 1.69258 1.22443 0.90417 0.91543 0.99344 1.22471 0.85680 0.94612 0.96226 0.91592 1.21679 0.96459 0.98214 1.03391 1.87915 1.14404 1.32040 1.91906 1.22381 0.90345 0.89671 0.92405 1.23354 1.00825 0.99276 0.96916 1.21159 0.92143 0.89809 0.91315 1.44394 1.49858 1.36480 1.01533 1.19019 1.23004 1.03565 0.89838 0.90445 1.24787 1.01055 0.98543 0.95964 1.69952 1.49585 1.33244 1.03955 0.86147 0.78704 0.82452 0.78508 1.21588 1.21776 1.20702 1.21312 0.90368 0.96929 0.88700 1.22675 0.83557 0.98598 0.99007 1.84216 1.16043 1.34109 1.70726 0.89592 0.89681 0.88931 0.82733 0.82350 0.88183 0.90397 0.91153 0.91737 0.91053 0.91904 0.91870 0.95207 0.92053 0.93786 0.94678 0.93045 0.87114 0.90472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.57 10.41 36.01 0.37 -0.19 16 2 C 0.02 0.20 7.31 -35.42 -0.26 -0.06 16 3 C -0.23 -2.32 10.77 -39.89 -0.43 -2.75 16 4 C -0.11 -1.41 10.63 -39.40 -0.42 -1.83 16 5 C -0.08 -1.12 6.77 -36.80 -0.25 -1.37 16 6 C 0.61 9.46 7.67 -12.87 -0.10 9.36 16 7 O -0.53 -9.20 16.35 5.19 0.08 -9.11 16 8 N -0.60 -8.93 2.95 -174.25 -0.51 -9.45 16 9 C 0.08 1.14 5.92 -3.54 -0.02 1.12 16 10 C 0.07 1.02 3.19 -26.59 -0.08 0.94 16 11 H 0.07 1.06 6.23 -51.93 -0.32 0.74 16 12 C -0.14 -1.70 9.57 37.16 0.36 -1.34 16 13 O -0.34 -6.35 9.93 -35.22 -0.35 -6.70 16 14 C 0.09 1.69 0.84 -89.65 -0.08 1.61 16 15 C -0.17 -3.25 5.87 -25.24 -0.15 -3.40 16 16 C 0.18 4.48 5.45 -2.95 -0.02 4.46 16 17 N -0.60 -15.32 3.40 -170.32 -0.58 -15.90 16 18 C -0.23 -6.32 10.26 -15.06 -0.15 -6.47 16 19 H 0.08 2.08 7.84 -52.49 -0.41 1.67 16 20 C -0.01 -0.20 5.44 -17.43 -0.09 -0.30 16 21 N -0.92 -27.21 10.51 55.49 0.58 -26.63 16 22 Si 0.91 22.19 29.56 -169.99 -5.03 17.16 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 C 0.15 3.17 6.42 -2.88 -0.02 3.15 16 27 C 0.08 1.26 4.89 -3.91 -0.02 1.24 16 28 O -0.15 -2.02 7.31 4.99 0.04 -1.98 16 29 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.15 1.15 8.06 -52.48 -0.42 0.72 16 33 H 0.16 1.75 8.06 -52.48 -0.42 1.33 16 34 H 0.10 1.31 7.06 -51.93 -0.37 0.94 16 35 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.06 1.20 6.07 -51.93 -0.32 0.88 16 40 H 0.06 1.19 7.83 -51.93 -0.41 0.78 16 41 H 0.03 0.82 7.97 -51.93 -0.41 0.41 16 42 H 0.06 1.69 6.94 -51.93 -0.36 1.33 16 43 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 44 H 0.04 0.69 7.99 -51.93 -0.42 0.27 16 45 H 0.05 1.05 8.14 -51.92 -0.42 0.63 16 46 H 0.11 1.65 4.28 -52.11 -0.22 1.43 16 47 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 372.63 15.07 5.62 5.62 Total: -1.00 -33.31 372.63 -8.52 -41.83 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -7.02 Total: 0.96 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: -1.36 Total: 4.19 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: -0.51 Total: -51.97 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: -0.23 Total: -17.79 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.03 Total: 17.16 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.31 -8.52 -41.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071129446.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.236 kcal (2) G-P(sol) polarization free energy of solvation -33.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds