Wall clock time and date at job start Tue Mar 31 2020 19:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35122 * 125.61983 * 2 1 4 4 C 1.40359 * 107.11826 * 180.02562 * 3 2 1 5 5 C 1.36541 * 106.70945 * 359.97438 * 4 3 2 6 6 C 1.46651 * 125.99321 * 179.97438 * 5 4 3 7 7 O 1.21701 * 119.99971 * 353.19186 * 6 5 4 8 8 N 1.34774 * 120.00653 * 173.19403 * 6 5 4 9 9 C 1.47160 * 121.08138 * 173.17500 * 8 6 5 10 10 C 1.53270 * 108.57381 * 128.76383 * 9 8 6 11 11 H 1.08995 * 109.51341 * 293.00176 * 10 9 8 12 12 C 1.53002 * 109.51370 * 172.90500 * 10 9 8 13 13 O 1.43125 * 109.23380 * 52.97894 * 10 9 8 14 14 C 1.41886 * 114.36342 * 299.11022 * 13 10 9 15 15 C 1.54376 * 110.71475 * 296.73596 * 14 13 10 16 16 C 1.54469 * 102.86617 * 276.30097 * 15 14 13 17 17 N 1.47088 * 107.29587 * 338.49773 * 16 15 14 18 18 C 1.36933 * 125.62925 * 179.02486 * 17 16 15 19 19 H 1.08001 * 120.00214 * 187.10343 * 18 17 16 20 20 C 1.38813 * 119.99968 * 7.10073 * 18 17 16 21 21 N 1.31616 * 120.00006 * 8.07005 * 20 18 17 22 22 Si 1.86801 * 120.00014 * 188.07704 * 20 18 17 23 23 H 1.48501 * 109.47284 * 84.98598 * 22 20 18 24 24 H 1.48504 * 109.47155 * 204.98688 * 22 20 18 25 25 H 1.48501 * 109.46992 * 324.98335 * 22 20 18 26 26 C 1.47576 * 108.74008 * 359.02121 * 17 16 15 27 27 C 1.47336 * 121.07199 * 353.15055 * 8 6 5 28 28 O 1.33930 * 125.61380 * 180.29377 * 2 1 3 29 29 H 1.08999 * 109.47357 * 90.00349 * 1 2 3 30 30 H 1.09001 * 109.47194 * 209.99802 * 1 2 3 31 31 H 1.08997 * 109.46774 * 329.99928 * 1 2 3 32 32 H 1.08006 * 126.43920 * 0.02562 * 3 2 1 33 33 H 1.08007 * 126.64875 * 179.97438 * 4 3 2 34 34 H 1.08997 * 109.61963 * 9.03775 * 9 8 6 35 35 H 1.09005 * 109.77109 * 248.57851 * 9 8 6 36 36 H 1.09001 * 109.47108 * 59.99825 * 12 10 9 37 37 H 1.08997 * 109.46931 * 299.99853 * 12 10 9 38 38 H 1.09006 * 109.47275 * 180.02562 * 12 10 9 39 39 H 1.09001 * 110.73195 * 34.64442 * 15 14 13 40 40 H 1.08997 * 110.73362 * 157.95816 * 15 14 13 41 41 H 1.09002 * 109.87652 * 97.92173 * 16 15 14 42 42 H 1.08992 * 109.87331 * 219.07269 * 16 15 14 43 43 H 0.97005 * 119.99975 * 179.97438 * 21 20 18 44 44 H 1.08991 * 110.38043 * 264.47316 * 26 17 16 45 45 H 1.09008 * 110.37214 * 142.12766 * 26 17 16 46 46 H 1.08995 * 109.68075 * 348.93416 * 27 8 6 47 47 H 1.08997 * 109.67768 * 109.48209 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2940 1.0984 0.0000 4 6 3.6250 0.6530 -0.0006 5 6 3.5823 -0.7117 -0.0004 6 6 4.7413 -1.6103 -0.0013 7 8 5.8633 -1.1560 -0.1274 8 7 4.5641 -2.9391 0.1374 9 6 5.6902 -3.8751 -0.0085 10 6 5.7204 -4.7971 1.2155 11 1 5.9723 -4.2163 2.1027 12 6 6.7697 -5.8907 1.0058 13 8 4.4321 -5.3971 1.3856 14 6 3.3799 -4.4714 1.6069 15 6 3.6010 -3.6982 2.9246 16 6 3.0240 -4.6587 3.9880 17 7 2.0949 -5.5670 3.2986 18 6 1.3888 -6.5825 3.8863 19 1 0.8193 -7.2678 3.2761 20 6 1.4051 -6.7310 5.2663 21 7 1.9647 -5.8092 6.0209 22 14 0.6329 -8.2394 6.0525 23 1 1.6178 -9.3508 6.0636 24 1 0.2309 -7.9203 7.4460 25 1 -0.5637 -8.6461 5.2729 26 6 2.0494 -5.2033 1.8691 27 6 3.2365 -3.5016 0.4404 28 8 2.2869 -1.0888 -0.0056 29 1 -0.3634 -0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.9613 2.1260 0.0004 33 1 4.5114 1.2702 -0.0011 34 1 6.6245 -3.3169 -0.0693 35 1 5.5601 -4.4705 -0.9122 36 1 7.7498 -5.4330 0.8720 37 1 6.5162 -6.4723 0.1194 38 1 6.7902 -6.5464 1.8764 39 1 4.6633 -3.5250 3.0969 40 1 3.0518 -2.7567 2.9164 41 1 3.8302 -5.2312 4.4467 42 1 2.4902 -4.0906 4.7497 43 1 1.9757 -5.9129 6.9853 44 1 1.2066 -4.5406 1.6727 45 1 1.9809 -6.0990 1.2516 46 1 2.5511 -2.6990 0.7126 47 1 2.8543 -4.0312 -0.4322 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071129446.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:41 Heat of formation + Delta-G solvation = -38.647430 kcal Electronic energy + Delta-G solvation = -30679.517936 eV Core-core repulsion = 26636.814234 eV Total energy + Delta-G solvation = -4042.703701 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.81022 -41.76953 -40.05926 -37.91727 -36.12946 -34.79243 -34.24888 -33.16319 -32.78723 -31.13090 -30.06487 -29.02575 -27.52526 -26.79553 -25.49178 -23.49487 -22.86504 -22.48556 -22.03244 -21.15278 -20.53121 -18.99367 -18.86817 -17.99422 -17.65011 -17.19711 -16.81816 -16.78803 -16.34445 -15.87563 -15.60722 -15.58191 -15.17891 -14.89540 -14.46942 -14.17979 -14.14820 -14.04841 -14.02254 -13.79733 -13.70467 -13.53755 -13.18533 -13.04005 -12.94660 -12.84212 -12.76902 -12.69578 -12.30016 -12.14151 -12.02939 -11.88071 -11.79576 -11.64175 -11.26099 -11.05172 -10.96905 -10.72664 -9.79388 -9.41282 -8.90009 -7.83235 -5.21551 -0.05795 1.32484 1.41842 1.46559 1.49753 1.57220 1.81642 2.01832 2.49324 2.56991 3.26194 3.33852 3.40866 3.57319 3.75149 3.79315 3.84053 3.90295 3.94867 3.99864 4.16199 4.26368 4.33919 4.45805 4.48269 4.53845 4.63895 4.66346 4.70450 4.74541 4.74930 4.77186 4.82813 4.89247 4.91482 5.02487 5.03892 5.12027 5.18719 5.28228 5.40358 5.47945 5.56472 5.69133 5.82673 6.07774 6.18003 6.31363 6.76001 7.07805 7.75245 8.40508 9.25847 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012081 B = 0.004094 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.167646 B = 6837.274867 C = 8482.973916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.021 3.979 3 C -0.228 4.228 4 C -0.112 4.112 5 C -0.115 4.115 6 C 0.605 3.395 7 O -0.555 6.555 8 N -0.604 5.604 9 C 0.089 3.911 10 C 0.065 3.935 11 H 0.048 0.952 12 C -0.134 4.134 13 O -0.367 6.367 14 C 0.105 3.895 15 C -0.150 4.150 16 C 0.193 3.807 17 N -0.617 5.617 18 C -0.239 4.239 19 H 0.086 0.914 20 C -0.065 4.065 21 N -0.952 5.952 22 Si 0.978 3.022 23 H -0.289 1.289 24 H -0.295 1.295 25 H -0.264 1.264 26 C 0.149 3.851 27 C 0.097 3.903 28 O -0.167 6.167 29 H 0.106 0.894 30 H 0.080 0.920 31 H 0.114 0.886 32 H 0.185 0.815 33 H 0.165 0.835 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.075 0.925 38 H 0.054 0.946 39 H 0.065 0.935 40 H 0.073 0.927 41 H -0.012 1.012 42 H 0.027 0.973 43 H 0.246 0.754 44 H 0.055 0.945 45 H 0.055 0.945 46 H 0.116 0.884 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.231 11.997 -16.438 20.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.031 4.031 3 C -0.247 4.247 4 C -0.133 4.133 5 C -0.166 4.166 6 C 0.395 3.605 7 O -0.436 6.436 8 N -0.335 5.335 9 C -0.033 4.033 10 C 0.007 3.993 11 H 0.066 0.934 12 C -0.191 4.191 13 O -0.287 6.287 14 C 0.064 3.936 15 C -0.188 4.188 16 C 0.068 3.932 17 N -0.343 5.343 18 C -0.368 4.368 19 H 0.103 0.897 20 C -0.258 4.258 21 N -0.601 5.601 22 Si 0.806 3.194 23 H -0.216 1.216 24 H -0.222 1.222 25 H -0.189 1.189 26 C 0.023 3.977 27 C -0.026 4.026 28 O -0.064 6.064 29 H 0.124 0.876 30 H 0.099 0.901 31 H 0.133 0.867 32 H 0.202 0.798 33 H 0.182 0.818 34 H 0.123 0.877 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.094 0.906 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.006 0.994 42 H 0.045 0.955 43 H 0.055 0.945 44 H 0.073 0.927 45 H 0.073 0.927 46 H 0.133 0.867 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.653 11.622 -16.331 20.113 hybrid contribution 0.035 -0.417 1.156 1.230 sum 1.689 11.204 -15.175 18.939 Atomic orbital electron populations 1.20681 0.81893 1.05792 1.05439 1.23798 0.95963 0.83968 0.99362 1.21920 0.91116 1.01213 1.10429 1.22212 0.99990 0.92382 0.98704 1.21731 0.82119 0.94762 1.17992 1.16831 0.86366 0.81058 0.76215 1.90816 1.23646 1.75923 1.53251 1.48095 1.10862 1.05415 1.69114 1.22480 0.90429 0.91219 0.99183 1.22669 0.84699 0.95629 0.96302 0.93405 1.21693 0.96915 0.97404 1.03138 1.87880 1.15723 1.33056 1.92010 1.22179 0.89294 0.89493 0.92674 1.23164 1.00682 0.98526 0.96465 1.20812 0.90537 0.89710 0.92162 1.44658 1.49613 1.36250 1.03798 1.19450 1.22763 1.04202 0.90361 0.89667 1.25651 1.02177 1.01392 0.96618 1.70179 1.51201 1.35059 1.03656 0.85099 0.78246 0.78752 0.77280 1.21625 1.22156 1.18883 1.21522 0.92492 0.97740 0.85911 1.22510 0.83940 0.97988 0.98160 1.84156 1.15792 1.35257 1.71196 0.87604 0.90068 0.86735 0.79764 0.81761 0.87660 0.88433 0.88384 0.90567 0.92642 0.91611 0.90804 0.99380 0.95485 0.94487 0.92697 0.92704 0.86673 0.88553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.88 10.41 71.24 0.74 -0.13 16 2 C 0.02 0.39 7.31 24.97 0.18 0.58 16 3 C -0.23 -4.07 10.77 22.07 0.24 -3.83 16 4 C -0.11 -2.59 10.63 22.39 0.24 -2.35 16 5 C -0.12 -3.12 6.77 24.07 0.16 -2.95 16 6 C 0.60 18.38 7.67 86.44 0.66 19.04 16 7 O -0.56 -19.09 16.35 -4.35 -0.07 -19.16 16 8 N -0.60 -17.16 2.95 -823.42 -2.43 -19.58 16 9 C 0.09 2.26 5.92 86.34 0.51 2.77 16 10 C 0.07 1.90 3.19 30.69 0.10 1.99 16 11 H 0.05 1.56 6.23 -2.39 -0.01 1.54 16 12 C -0.13 -3.09 9.57 71.98 0.69 -2.40 16 13 O -0.37 -13.41 9.93 -148.95 -1.48 -14.89 16 14 C 0.11 3.74 0.84 -10.16 -0.01 3.73 16 15 C -0.15 -6.00 5.87 31.56 0.19 -5.81 16 16 C 0.19 10.02 5.45 86.77 0.47 10.49 16 17 N -0.62 -32.29 3.40 -692.76 -2.36 -34.65 16 18 C -0.24 -13.53 10.26 84.03 0.86 -12.66 16 19 H 0.09 4.56 7.84 -2.91 -0.02 4.54 16 20 C -0.07 -3.78 5.44 84.86 0.46 -3.32 16 21 N -0.95 -58.49 10.51 21.65 0.23 -58.26 16 22 Si 0.98 46.22 29.56 68.60 2.03 48.25 16 23 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 24 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 25 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 26 C 0.15 6.05 6.42 86.55 0.56 6.60 16 27 C 0.10 2.74 4.89 86.01 0.42 3.16 16 28 O -0.17 -4.06 7.31 -5.07 -0.04 -4.10 16 29 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.19 2.05 8.06 -2.91 -0.02 2.02 16 33 H 0.16 3.45 8.06 -2.91 -0.02 3.43 16 34 H 0.11 2.61 7.06 -2.39 -0.02 2.59 16 35 H 0.10 2.12 8.14 -2.38 -0.02 2.10 16 36 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 39 H 0.07 2.58 6.07 -2.39 -0.01 2.57 16 40 H 0.07 2.78 7.83 -2.39 -0.02 2.76 16 41 H -0.01 -0.71 7.97 -2.39 -0.02 -0.73 16 42 H 0.03 1.57 6.94 -2.39 -0.02 1.55 16 43 H 0.25 14.71 8.31 -92.70 -0.77 13.94 16 44 H 0.06 2.04 7.99 -2.39 -0.02 2.02 16 45 H 0.05 2.19 8.14 -2.38 -0.02 2.17 16 46 H 0.12 3.24 4.28 -5.20 -0.02 3.21 16 47 H 0.10 2.40 8.14 -2.39 -0.02 2.39 16 Total: -1.00 -74.72 372.63 3.32 -71.40 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: 0.96 Total: 16.09 kcal Atomic # 6 Polarization: 8.43 SS G_CDS: 6.47 Total: 14.90 kcal Atomic # 7 Polarization: -107.94 SS G_CDS: -4.56 Total: -112.49 kcal Atomic # 8 Polarization: -36.56 SS G_CDS: -1.59 Total: -38.15 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -74.72 3.32 -71.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071129446.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.751 kcal (2) G-P(sol) polarization free energy of solvation -74.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds