Wall clock time and date at job start Tue Mar 31 2020 19:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.33644 * 125.80479 * 2 1 4 4 C 1.34213 * 110.91198 * 179.97438 * 3 2 1 5 5 C 1.34174 * 109.12010 * 359.74321 * 4 3 2 6 6 C 1.36420 * 125.79702 * 179.97438 * 2 1 3 7 7 C 1.47378 * 127.19291 * 359.96894 * 6 2 1 8 8 O 1.21612 * 120.00057 * 29.03433 * 7 6 2 9 9 N 1.34776 * 119.99645 * 209.03997 * 7 6 2 10 10 C 1.47165 * 121.07974 * 355.07390 * 9 7 6 11 11 C 1.53276 * 108.57153 * 128.76561 * 10 9 7 12 12 H 1.09001 * 109.51128 * 293.00350 * 11 10 9 13 13 C 1.53000 * 109.51230 * 172.90466 * 11 10 9 14 14 O 1.43127 * 109.22942 * 52.98139 * 11 10 9 15 15 C 1.41884 * 114.36545 * 299.10551 * 14 11 10 16 16 C 1.54370 * 110.71460 * 296.74074 * 15 14 11 17 17 C 1.54462 * 102.86937 * 276.29786 * 16 15 14 18 18 N 1.47088 * 107.29331 * 338.50324 * 17 16 15 19 19 C 1.36934 * 125.62737 * 179.02093 * 18 17 16 20 20 H 1.08000 * 120.00177 * 187.21340 * 19 18 17 21 21 C 1.38815 * 120.00175 * 7.21599 * 19 18 17 22 22 N 1.31622 * 119.99781 * 351.20346 * 21 19 18 23 23 Si 1.86804 * 120.00134 * 171.21184 * 21 19 18 24 24 H 1.48494 * 109.46924 * 94.96944 * 23 21 19 25 25 H 1.48502 * 109.46781 * 214.96721 * 23 21 19 26 26 H 1.48499 * 109.47111 * 334.96580 * 23 21 19 27 27 C 1.47574 * 108.74280 * 359.01651 * 18 17 16 28 28 C 1.47338 * 121.07685 * 175.05607 * 9 7 6 29 29 H 1.08994 * 109.47193 * 270.00493 * 1 2 3 30 30 H 1.09000 * 109.46538 * 30.00568 * 1 2 3 31 31 H 1.09002 * 109.46740 * 150.00372 * 1 2 3 32 32 H 1.07999 * 125.44283 * 179.97438 * 4 3 2 33 33 H 1.08005 * 127.02271 * 180.25976 * 5 4 3 34 34 H 1.09005 * 109.61599 * 9.04226 * 10 9 7 35 35 H 1.09002 * 109.77038 * 248.58517 * 10 9 7 36 36 H 1.09007 * 109.46673 * 59.99757 * 13 11 10 37 37 H 1.09001 * 109.47048 * 300.00591 * 13 11 10 38 38 H 1.09001 * 109.47149 * 180.02562 * 13 11 10 39 39 H 1.08995 * 110.73651 * 34.64325 * 16 15 14 40 40 H 1.09006 * 110.73766 * 157.95636 * 16 15 14 41 41 H 1.09006 * 109.87654 * 97.92195 * 17 16 15 42 42 H 1.08995 * 109.88261 * 219.07599 * 17 16 15 43 43 H 0.96998 * 120.00056 * 179.97438 * 22 21 19 44 44 H 1.08999 * 110.37575 * 264.48044 * 27 18 17 45 45 H 1.09001 * 110.37203 * 142.13124 * 27 18 17 46 46 H 1.09006 * 109.67443 * 348.93054 * 28 9 7 47 47 H 1.08996 * 109.67709 * 109.47335 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.2889 1.0839 0.0000 4 6 3.5860 0.7389 0.0006 5 6 3.6849 -0.5992 0.0066 6 6 2.3050 -1.1065 0.0005 7 6 1.8739 -2.5158 0.0018 8 8 0.8152 -2.8283 -0.5087 9 7 2.6529 -3.4582 0.5687 10 6 3.9853 -3.1253 1.0974 11 6 4.0866 -3.6525 2.5331 12 1 3.4014 -3.0975 3.1739 13 6 5.5185 -3.4762 3.0424 14 8 3.7405 -5.0412 2.5508 15 6 2.4202 -5.3210 2.1133 16 6 1.3837 -4.6729 3.0559 17 6 1.2606 -5.7080 4.1957 18 7 1.7224 -6.9998 3.6650 19 6 1.7889 -8.1731 4.3679 20 1 2.2510 -9.0427 3.9245 21 6 1.2623 -8.2448 5.6503 22 7 0.8567 -7.1496 6.2573 23 14 1.1295 -9.8955 6.5145 24 1 2.3224 -10.1014 7.3745 25 1 -0.0955 -9.9177 7.3538 26 1 1.0557 -10.9796 5.5024 27 6 2.1020 -6.8226 2.2500 28 6 2.1979 -4.8552 0.6797 29 1 -0.3633 0.0001 1.0276 30 1 -0.3632 0.8900 -0.5139 31 1 -0.3633 -0.8901 -0.5138 32 1 4.4173 1.4283 0.0003 33 1 4.5928 -1.1841 0.0125 34 1 4.1204 -2.0436 1.0943 35 1 4.7537 -3.5919 0.4810 36 1 5.7829 -2.4189 3.0244 37 1 6.2030 -4.0327 2.4021 38 1 5.5899 -3.8517 4.0632 39 1 1.7515 -3.7205 3.4376 40 1 0.4280 -4.5429 2.5479 41 1 1.8852 -5.4085 5.0374 42 1 0.2210 -5.7880 4.5132 43 1 0.4884 -7.1997 7.1533 44 1 1.2728 -7.0958 1.5975 45 1 2.9831 -7.4201 2.0159 46 1 1.1376 -4.9164 0.4341 47 1 2.7702 -5.4829 -0.0032 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071129743.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:46 Heat of formation + Delta-G solvation = -9.663568 kcal Electronic energy + Delta-G solvation = -30498.462377 eV Core-core repulsion = 26457.015510 eV Total energy + Delta-G solvation = -4041.446867 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.86844 -40.47216 -38.60657 -36.37956 -34.69192 -33.53937 -32.81791 -32.11710 -31.31244 -29.38169 -28.60728 -27.25901 -26.53686 -25.60635 -23.95747 -22.78726 -21.93445 -21.35125 -20.17745 -19.45545 -18.83457 -17.64459 -17.00766 -16.75237 -16.54381 -16.31851 -15.66980 -15.16750 -14.99345 -14.63387 -14.26946 -14.09990 -13.85742 -13.46965 -13.44003 -13.27724 -13.19888 -13.11968 -12.87057 -12.41158 -12.26220 -12.05107 -11.97439 -11.91787 -11.60893 -11.56976 -10.97761 -10.90964 -10.82176 -10.33940 -10.24134 -10.10978 -10.06935 -10.02025 -9.75176 -9.59635 -9.50713 -8.83313 -8.50705 -8.32446 -6.77685 -5.67881 -2.99193 1.21234 1.76927 2.53359 2.85550 3.15962 3.43698 3.49098 3.51416 3.89486 4.23199 4.44055 4.53174 4.61849 4.71665 4.88461 4.99995 5.06838 5.16782 5.20131 5.25354 5.27755 5.32909 5.41754 5.47985 5.54634 5.60103 5.60712 5.61592 5.80958 5.83417 5.89931 5.94501 5.99946 6.02566 6.16245 6.19338 6.38287 6.50687 6.52970 6.58378 6.67536 6.76316 7.35391 7.59504 7.66697 7.71255 7.87039 8.12235 8.29475 9.25803 9.86292 10.52916 11.44664 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020146 B = 0.003160 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.534085 B = 8857.710779 C = 9300.857559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.074 3.926 3 O -0.176 6.176 4 C -0.036 4.036 5 C -0.200 4.200 6 C -0.240 4.240 7 C 0.593 3.407 8 O -0.541 6.541 9 N -0.600 5.600 10 C 0.053 3.947 11 C 0.069 3.931 12 H 0.064 0.936 13 C -0.141 4.141 14 O -0.345 6.345 15 C 0.093 3.907 16 C -0.165 4.165 17 C 0.185 3.815 18 N -0.599 5.599 19 C -0.226 4.226 20 H 0.078 0.922 21 C -0.007 4.007 22 N -0.920 5.920 23 Si 0.909 3.091 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.153 3.847 28 C 0.099 3.901 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.111 0.889 32 H 0.209 0.791 33 H 0.168 0.832 34 H 0.114 0.886 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.042 0.958 42 H 0.045 0.955 43 H 0.251 0.749 44 H 0.038 0.962 45 H 0.050 0.950 46 H 0.102 0.898 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.104 17.630 -13.017 23.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.022 3.978 3 O -0.072 6.072 4 C -0.102 4.102 5 C -0.218 4.218 6 C -0.244 4.244 7 C 0.383 3.617 8 O -0.420 6.420 9 N -0.332 5.332 10 C -0.070 4.070 11 C 0.010 3.990 12 H 0.082 0.918 13 C -0.199 4.199 14 O -0.263 6.263 15 C 0.052 3.948 16 C -0.204 4.204 17 C 0.060 3.940 18 N -0.325 5.325 19 C -0.354 4.354 20 H 0.096 0.904 21 C -0.203 4.203 22 N -0.567 5.567 23 Si 0.740 3.260 24 H -0.218 1.218 25 H -0.217 1.217 26 H -0.206 1.206 27 C 0.027 3.973 28 C -0.024 4.024 29 H 0.107 0.893 30 H 0.099 0.901 31 H 0.129 0.871 32 H 0.225 0.775 33 H 0.185 0.815 34 H 0.132 0.868 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.055 0.945 45 H 0.068 0.932 46 H 0.120 0.880 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.495 17.510 -13.011 22.761 hybrid contribution 0.200 -0.728 0.547 0.932 sum 6.695 16.783 -12.463 21.950 Atomic orbital electron populations 1.20652 0.83806 1.05487 1.04481 1.22756 0.94080 0.82946 0.98045 1.83764 1.17123 1.34973 1.71355 1.23903 0.83624 0.96330 1.06339 1.23098 0.96847 0.94420 1.07467 1.21104 0.93425 0.93873 1.15989 1.17191 0.83287 0.83577 0.77651 1.90751 1.23473 1.81856 1.45902 1.47921 1.17405 1.09137 1.58786 1.23247 0.84173 1.03586 0.95956 1.22453 0.97532 0.84796 0.94215 0.91771 1.21690 0.93938 1.01457 1.02767 1.87910 1.29544 1.22422 1.86469 1.22398 0.83168 0.98387 0.90860 1.23356 0.97932 0.99757 0.99321 1.21112 0.99163 0.82296 0.91384 1.44425 1.76355 1.06598 1.05155 1.19039 1.31935 0.87666 0.96734 0.90394 1.24812 1.01098 0.97251 0.97169 1.69993 1.47782 1.25314 1.13606 0.86136 0.77200 0.83343 0.79339 1.21755 1.21685 1.20611 1.21324 0.97515 0.89638 0.88867 1.22175 1.02400 0.80345 0.97436 0.89348 0.90120 0.87104 0.77494 0.81534 0.86818 0.90684 0.91358 0.91779 0.91053 0.92085 0.91682 0.93948 0.93676 0.93849 0.94480 0.93160 0.87958 0.90889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.84 10.18 36.01 0.37 -0.47 16 2 C 0.07 0.84 7.37 -34.96 -0.26 0.58 16 3 O -0.18 -1.76 10.52 7.68 0.08 -1.67 16 4 C -0.04 -0.28 12.03 29.30 0.35 0.08 16 5 C -0.20 -1.82 8.81 -37.46 -0.33 -2.15 16 6 C -0.24 -2.97 5.88 -103.28 -0.61 -3.58 16 7 C 0.59 8.92 7.59 -12.54 -0.10 8.82 16 8 O -0.54 -9.47 14.75 5.27 0.08 -9.39 16 9 N -0.60 -8.64 2.95 -173.97 -0.51 -9.15 16 10 C 0.05 0.62 5.13 -3.54 -0.02 0.61 16 11 C 0.07 0.97 3.19 -26.59 -0.08 0.88 16 12 H 0.06 0.98 6.23 -51.93 -0.32 0.66 16 13 C -0.14 -1.58 9.57 37.16 0.36 -1.22 16 14 O -0.34 -6.35 9.93 -35.22 -0.35 -6.70 16 15 C 0.09 1.73 0.84 -89.65 -0.08 1.65 16 16 C -0.17 -3.31 5.87 -25.25 -0.15 -3.46 16 17 C 0.19 4.68 5.39 -2.95 -0.02 4.66 16 18 N -0.60 -15.75 3.40 -170.32 -0.58 -16.33 16 19 C -0.23 -6.43 10.26 -15.06 -0.15 -6.58 16 20 H 0.08 2.14 7.84 -52.49 -0.41 1.73 16 21 C -0.01 -0.20 5.48 -17.43 -0.10 -0.30 16 22 N -0.92 -27.54 10.39 55.49 0.58 -26.96 16 23 Si 0.91 22.44 29.56 -169.99 -5.03 17.41 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 27 C 0.15 3.28 6.42 -2.88 -0.02 3.26 16 28 C 0.10 1.57 5.28 -3.91 -0.02 1.55 16 29 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.11 1.24 6.42 -51.93 -0.33 0.90 16 32 H 0.21 0.69 8.06 -52.49 -0.42 0.27 16 33 H 0.17 1.16 6.10 -52.48 -0.32 0.84 16 34 H 0.11 1.10 3.23 -51.93 -0.17 0.93 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.06 1.16 6.07 -51.93 -0.32 0.84 16 40 H 0.06 1.27 7.83 -51.93 -0.41 0.86 16 41 H 0.04 1.19 7.57 -51.93 -0.39 0.80 16 42 H 0.05 1.25 7.36 -51.93 -0.38 0.87 16 43 H 0.25 7.29 8.31 -40.82 -0.34 6.96 16 44 H 0.04 0.76 7.99 -51.93 -0.42 0.35 16 45 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.10 1.71 6.90 -51.93 -0.36 1.35 16 47 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 367.16 15.07 5.53 5.53 Total: -1.00 -34.61 367.16 -7.81 -42.42 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -6.77 Total: 0.51 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: -0.85 Total: 4.33 kcal Atomic # 7 Polarization: -51.93 SS G_CDS: -0.52 Total: -52.44 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -0.19 Total: -17.77 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.03 Total: 17.41 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.61 -7.81 -42.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071129743.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.755 kcal (2) G-P(sol) polarization free energy of solvation -34.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds