Wall clock time and date at job start Tue Mar 31 2020 19:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.33644 * 125.80479 * 2 1 4 4 C 1.34213 * 110.91198 * 179.97438 * 3 2 1 5 5 C 1.34174 * 109.12010 * 359.74321 * 4 3 2 6 6 C 1.36420 * 125.79702 * 179.97438 * 2 1 3 7 7 C 1.47378 * 127.19291 * 359.96894 * 6 2 1 8 8 O 1.21612 * 120.00057 * 29.03433 * 7 6 2 9 9 N 1.34776 * 119.99645 * 209.03997 * 7 6 2 10 10 C 1.47165 * 121.07974 * 355.07390 * 9 7 6 11 11 C 1.53276 * 108.57153 * 128.76561 * 10 9 7 12 12 H 1.09001 * 109.51128 * 293.00350 * 11 10 9 13 13 C 1.53000 * 109.51230 * 172.90466 * 11 10 9 14 14 O 1.43127 * 109.22942 * 52.98139 * 11 10 9 15 15 C 1.41884 * 114.36545 * 299.10551 * 14 11 10 16 16 C 1.54370 * 110.71460 * 296.74074 * 15 14 11 17 17 C 1.54462 * 102.86937 * 276.29786 * 16 15 14 18 18 N 1.47088 * 107.29331 * 338.50324 * 17 16 15 19 19 C 1.36934 * 125.62737 * 179.02093 * 18 17 16 20 20 H 1.08000 * 120.00177 * 187.21340 * 19 18 17 21 21 C 1.38815 * 120.00175 * 7.21599 * 19 18 17 22 22 N 1.31622 * 119.99781 * 351.20346 * 21 19 18 23 23 Si 1.86804 * 120.00134 * 171.21184 * 21 19 18 24 24 H 1.48494 * 109.46924 * 94.96944 * 23 21 19 25 25 H 1.48502 * 109.46781 * 214.96721 * 23 21 19 26 26 H 1.48499 * 109.47111 * 334.96580 * 23 21 19 27 27 C 1.47574 * 108.74280 * 359.01651 * 18 17 16 28 28 C 1.47338 * 121.07685 * 175.05607 * 9 7 6 29 29 H 1.08994 * 109.47193 * 270.00493 * 1 2 3 30 30 H 1.09000 * 109.46538 * 30.00568 * 1 2 3 31 31 H 1.09002 * 109.46740 * 150.00372 * 1 2 3 32 32 H 1.07999 * 125.44283 * 179.97438 * 4 3 2 33 33 H 1.08005 * 127.02271 * 180.25976 * 5 4 3 34 34 H 1.09005 * 109.61599 * 9.04226 * 10 9 7 35 35 H 1.09002 * 109.77038 * 248.58517 * 10 9 7 36 36 H 1.09007 * 109.46673 * 59.99757 * 13 11 10 37 37 H 1.09001 * 109.47048 * 300.00591 * 13 11 10 38 38 H 1.09001 * 109.47149 * 180.02562 * 13 11 10 39 39 H 1.08995 * 110.73651 * 34.64325 * 16 15 14 40 40 H 1.09006 * 110.73766 * 157.95636 * 16 15 14 41 41 H 1.09006 * 109.87654 * 97.92195 * 17 16 15 42 42 H 1.08995 * 109.88261 * 219.07599 * 17 16 15 43 43 H 0.96998 * 120.00056 * 179.97438 * 22 21 19 44 44 H 1.08999 * 110.37575 * 264.48044 * 27 18 17 45 45 H 1.09001 * 110.37203 * 142.13124 * 27 18 17 46 46 H 1.09006 * 109.67443 * 348.93054 * 28 9 7 47 47 H 1.08996 * 109.67709 * 109.47335 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.2889 1.0839 0.0000 4 6 3.5860 0.7389 0.0006 5 6 3.6849 -0.5992 0.0066 6 6 2.3050 -1.1065 0.0005 7 6 1.8739 -2.5158 0.0018 8 8 0.8152 -2.8283 -0.5087 9 7 2.6529 -3.4582 0.5687 10 6 3.9853 -3.1253 1.0974 11 6 4.0866 -3.6525 2.5331 12 1 3.4014 -3.0975 3.1739 13 6 5.5185 -3.4762 3.0424 14 8 3.7405 -5.0412 2.5508 15 6 2.4202 -5.3210 2.1133 16 6 1.3837 -4.6729 3.0559 17 6 1.2606 -5.7080 4.1957 18 7 1.7224 -6.9998 3.6650 19 6 1.7889 -8.1731 4.3679 20 1 2.2510 -9.0427 3.9245 21 6 1.2623 -8.2448 5.6503 22 7 0.8567 -7.1496 6.2573 23 14 1.1295 -9.8955 6.5145 24 1 2.3224 -10.1014 7.3745 25 1 -0.0955 -9.9177 7.3538 26 1 1.0557 -10.9796 5.5024 27 6 2.1020 -6.8226 2.2500 28 6 2.1979 -4.8552 0.6797 29 1 -0.3633 0.0001 1.0276 30 1 -0.3632 0.8900 -0.5139 31 1 -0.3633 -0.8901 -0.5138 32 1 4.4173 1.4283 0.0003 33 1 4.5928 -1.1841 0.0125 34 1 4.1204 -2.0436 1.0943 35 1 4.7537 -3.5919 0.4810 36 1 5.7829 -2.4189 3.0244 37 1 6.2030 -4.0327 2.4021 38 1 5.5899 -3.8517 4.0632 39 1 1.7515 -3.7205 3.4376 40 1 0.4280 -4.5429 2.5479 41 1 1.8852 -5.4085 5.0374 42 1 0.2210 -5.7880 4.5132 43 1 0.4884 -7.1997 7.1533 44 1 1.2728 -7.0958 1.5975 45 1 2.9831 -7.4201 2.0159 46 1 1.1376 -4.9164 0.4341 47 1 2.7702 -5.4829 -0.0032 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071129743.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:45 Heat of formation + Delta-G solvation = -32.785308 kcal Electronic energy + Delta-G solvation = -30499.465011 eV Core-core repulsion = 26457.015510 eV Total energy + Delta-G solvation = -4042.449501 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.60484 -41.75409 -39.90667 -37.98678 -35.93173 -34.90992 -34.01971 -32.98387 -32.74763 -31.13936 -30.16002 -28.19992 -27.74202 -26.98641 -25.67508 -23.72993 -23.22269 -22.25271 -22.05392 -20.75140 -19.84969 -18.97706 -18.57449 -17.94713 -17.60869 -17.20256 -16.80447 -16.73895 -16.37725 -15.99719 -15.75855 -15.52589 -15.14708 -14.97025 -14.45757 -14.33773 -14.15340 -14.03240 -13.94878 -13.86806 -13.64102 -13.57810 -13.15243 -13.02113 -12.80487 -12.78870 -12.76534 -12.57756 -12.26724 -12.13394 -12.01179 -11.87367 -11.71309 -11.52177 -11.07101 -10.93015 -10.67680 -10.66623 -9.65511 -9.45009 -8.91839 -7.87368 -5.21611 0.34876 1.10408 1.45296 1.47646 1.57338 1.65499 1.95673 2.14748 2.48620 2.61085 3.31709 3.39040 3.51451 3.56328 3.62901 3.82328 3.87170 3.90739 3.93618 4.03141 4.22807 4.27800 4.35134 4.42101 4.48148 4.56161 4.57462 4.58864 4.68193 4.72897 4.74203 4.76008 4.82965 4.86774 4.93107 5.03492 5.08737 5.18636 5.24095 5.31999 5.37923 5.42824 5.55772 5.67387 6.02740 6.15678 6.28299 6.37272 7.00861 7.07015 7.73671 8.39720 9.24432 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020146 B = 0.003160 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.534085 B = 8857.710779 C = 9300.857559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.065 3.935 3 O -0.180 6.180 4 C -0.018 4.018 5 C -0.211 4.211 6 C -0.268 4.268 7 C 0.589 3.411 8 O -0.576 6.576 9 N -0.602 5.602 10 C 0.059 3.941 11 C 0.060 3.940 12 H 0.047 0.953 13 C -0.135 4.135 14 O -0.371 6.371 15 C 0.110 3.890 16 C -0.149 4.149 17 C 0.198 3.802 18 N -0.621 5.621 19 C -0.242 4.242 20 H 0.085 0.915 21 C -0.066 4.066 22 N -0.951 5.951 23 Si 0.980 3.020 24 H -0.287 1.287 25 H -0.294 1.294 26 H -0.266 1.266 27 C 0.147 3.853 28 C 0.108 3.892 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.090 0.910 32 H 0.254 0.746 33 H 0.191 0.809 34 H 0.142 0.858 35 H 0.095 0.905 36 H 0.106 0.894 37 H 0.074 0.926 38 H 0.048 0.952 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.003 0.997 42 H 0.009 0.991 43 H 0.246 0.754 44 H 0.050 0.950 45 H 0.053 0.947 46 H 0.091 0.909 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.361 19.224 -14.545 25.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.012 3.988 3 O -0.075 6.075 4 C -0.083 4.083 5 C -0.230 4.230 6 C -0.272 4.272 7 C 0.380 3.620 8 O -0.457 6.457 9 N -0.334 5.334 10 C -0.063 4.063 11 C 0.002 3.998 12 H 0.065 0.935 13 C -0.192 4.192 14 O -0.290 6.290 15 C 0.068 3.932 16 C -0.188 4.188 17 C 0.073 3.927 18 N -0.347 5.347 19 C -0.371 4.371 20 H 0.103 0.897 21 C -0.259 4.259 22 N -0.600 5.600 23 Si 0.808 3.192 24 H -0.214 1.214 25 H -0.220 1.220 26 H -0.191 1.191 27 C 0.021 3.979 28 C -0.016 4.016 29 H 0.111 0.889 30 H 0.121 0.879 31 H 0.108 0.892 32 H 0.270 0.730 33 H 0.208 0.792 34 H 0.159 0.841 35 H 0.114 0.886 36 H 0.125 0.875 37 H 0.093 0.907 38 H 0.067 0.933 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.022 0.978 42 H 0.027 0.973 43 H 0.056 0.944 44 H 0.067 0.933 45 H 0.071 0.929 46 H 0.109 0.891 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.789 19.115 -14.570 25.592 hybrid contribution -0.448 -1.149 1.013 1.596 sum 8.341 17.967 -13.558 24.004 Atomic orbital electron populations 1.20639 0.83458 1.05559 1.04785 1.22946 0.94724 0.83208 0.97934 1.83795 1.18187 1.34430 1.71136 1.24821 0.83442 0.96744 1.03279 1.23321 0.95957 0.95226 1.08469 1.21116 0.95731 0.92461 1.17887 1.17627 0.82716 0.84679 0.76954 1.90728 1.24965 1.82584 1.47463 1.47985 1.18362 1.08290 1.58759 1.23426 0.83211 1.05372 0.94257 1.22771 0.98822 0.82352 0.95822 0.93478 1.21720 0.92067 1.04066 1.01388 1.87872 1.28823 1.25466 1.86827 1.22078 0.83050 0.96024 0.92027 1.23157 0.99067 0.98612 0.97921 1.20762 0.95977 0.83736 0.92199 1.44710 1.76487 1.06292 1.07183 1.19467 1.31668 0.88743 0.97210 0.89746 1.25708 1.01228 1.00825 0.98118 1.70219 1.48773 1.27397 1.13611 0.85043 0.76766 0.79267 0.78141 1.21355 1.22014 1.19072 1.21522 0.97881 0.92045 0.86427 1.21920 1.02218 0.81912 0.95506 0.88911 0.87855 0.89183 0.72972 0.79242 0.84128 0.88646 0.87515 0.90714 0.93257 0.91133 0.91305 0.97840 0.97317 0.94436 0.93253 0.92856 0.89075 0.89170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.63 10.18 71.24 0.73 -0.91 16 2 C 0.06 1.37 7.37 25.26 0.19 1.55 16 3 O -0.18 -3.04 10.52 4.56 0.05 -2.99 16 4 C -0.02 -0.19 12.03 66.89 0.80 0.61 16 5 C -0.21 -3.04 8.81 23.65 0.21 -2.83 16 6 C -0.27 -6.15 5.88 -18.99 -0.11 -6.26 16 7 C 0.59 17.21 7.59 86.65 0.66 17.87 16 8 O -0.58 -20.38 14.75 -4.07 -0.06 -20.44 16 9 N -0.60 -16.44 2.95 -822.57 -2.42 -18.87 16 10 C 0.06 1.21 5.13 86.34 0.44 1.65 16 11 C 0.06 1.60 3.19 30.69 0.10 1.70 16 12 H 0.05 1.40 6.23 -2.39 -0.01 1.39 16 13 C -0.14 -2.69 9.57 71.98 0.69 -2.00 16 14 O -0.37 -13.48 9.93 -148.95 -1.48 -14.96 16 15 C 0.11 4.06 0.84 -10.17 -0.01 4.05 16 16 C -0.15 -6.16 5.87 31.56 0.19 -5.97 16 17 C 0.20 10.58 5.39 86.76 0.47 11.05 16 18 N -0.62 -33.71 3.40 -692.77 -2.36 -36.06 16 19 C -0.24 -14.13 10.26 84.03 0.86 -13.27 16 20 H 0.08 4.68 7.84 -2.91 -0.02 4.65 16 21 C -0.07 -3.89 5.48 84.86 0.46 -3.42 16 22 N -0.95 -59.44 10.39 21.65 0.22 -59.21 16 23 Si 0.98 47.05 29.56 68.60 2.03 49.08 16 24 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 25 H -0.29 -14.13 7.11 99.48 0.71 -13.43 16 26 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 27 C 0.15 6.33 6.42 86.55 0.56 6.89 16 28 C 0.11 3.34 5.28 86.01 0.45 3.79 16 29 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.09 2.07 6.42 -2.39 -0.02 2.06 16 32 H 0.25 0.14 8.06 -2.91 -0.02 0.12 16 33 H 0.19 1.70 6.10 -2.91 -0.02 1.68 16 34 H 0.14 2.17 3.23 -2.38 -0.01 2.16 16 35 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.11 1.30 8.14 -2.38 -0.02 1.28 16 37 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.07 2.76 6.07 -2.39 -0.01 2.74 16 40 H 0.07 2.77 7.83 -2.38 -0.02 2.75 16 41 H 0.00 0.20 7.57 -2.38 -0.02 0.18 16 42 H 0.01 0.51 7.36 -2.39 -0.02 0.50 16 43 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 44 H 0.05 2.02 7.99 -2.39 -0.02 2.00 16 45 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 46 H 0.09 3.05 6.90 -2.38 -0.02 3.03 16 47 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 Total: -1.00 -79.71 367.16 3.65 -76.06 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: 0.99 Total: 12.90 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: 6.68 Total: 14.50 kcal Atomic # 7 Polarization: -109.59 SS G_CDS: -4.56 Total: -114.14 kcal Atomic # 8 Polarization: -36.89 SS G_CDS: -1.49 Total: -38.38 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.08 kcal Total: -79.71 3.65 -76.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071129743.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.272 kcal (2) G-P(sol) polarization free energy of solvation -79.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds