Wall clock time and date at job start Tue Mar 31 2020 19:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34178 * 125.43309 * 2 1 4 4 C 1.47026 * 105.95394 * 180.02562 * 3 2 1 5 5 C 1.47372 * 127.19576 * 180.02562 * 4 3 2 6 6 O 1.21614 * 119.99721 * 336.34515 * 5 4 3 7 7 N 1.34772 * 120.00490 * 156.35070 * 5 4 3 8 8 C 1.47164 * 121.06303 * 173.73574 * 7 5 4 9 9 C 1.53285 * 108.49908 * 128.78020 * 8 7 5 10 10 H 1.09000 * 109.51389 * 293.00591 * 9 8 7 11 11 C 1.53005 * 109.51168 * 172.90766 * 9 8 7 12 12 O 1.43084 * 109.22380 * 52.98284 * 9 8 7 13 13 C 1.42054 * 114.39648 * 298.84990 * 12 9 8 14 14 C 1.54524 * 110.33496 * 182.56397 * 13 12 9 15 15 C 1.55019 * 101.53009 * 83.93954 * 14 13 12 16 16 N 1.47487 * 104.89845 * 36.37401 * 15 14 13 17 17 C 1.36935 * 125.65842 * 155.96069 * 16 15 14 18 18 H 1.07993 * 120.00632 * 4.97818 * 17 16 15 19 19 C 1.38816 * 119.99350 * 184.97623 * 17 16 15 20 20 N 1.31617 * 120.00145 * 352.88297 * 19 17 16 21 21 Si 1.86804 * 119.99516 * 172.88699 * 19 17 16 22 22 H 1.48500 * 109.47028 * 94.98832 * 21 19 17 23 23 H 1.48497 * 109.46887 * 214.98348 * 21 19 17 24 24 H 1.48497 * 109.47318 * 334.98340 * 21 19 17 25 25 C 1.47180 * 108.66909 * 335.98322 * 16 15 14 26 26 C 1.47294 * 121.05572 * 353.70832 * 7 5 4 27 27 C 1.36421 * 105.61167 * 0.26197 * 4 3 2 28 28 O 1.33648 * 108.40000 * 359.57348 * 27 4 3 29 29 H 1.09000 * 109.47204 * 90.00449 * 1 2 3 30 30 H 1.09005 * 109.46699 * 209.99542 * 1 2 3 31 31 H 1.08992 * 109.47312 * 329.99535 * 1 2 3 32 32 H 1.07995 * 127.02896 * 359.97438 * 3 2 1 33 33 H 1.08997 * 109.63214 * 248.48234 * 8 7 5 34 34 H 1.09004 * 109.63062 * 8.87945 * 8 7 5 35 35 H 1.08997 * 109.47029 * 60.00333 * 11 9 8 36 36 H 1.09006 * 109.46738 * 179.97438 * 11 9 8 37 37 H 1.09001 * 109.47133 * 299.99728 * 11 9 8 38 38 H 1.08997 * 111.01343 * 202.00087 * 14 13 12 39 39 H 1.09001 * 111.00897 * 325.87483 * 14 13 12 40 40 H 1.08995 * 110.35724 * 155.23680 * 15 14 13 41 41 H 1.09002 * 110.35471 * 277.52065 * 15 14 13 42 42 H 0.97000 * 119.99772 * 180.02562 * 20 19 17 43 43 H 1.08995 * 109.90894 * 242.13021 * 25 16 15 44 44 H 1.09010 * 109.90413 * 120.87932 * 25 16 15 45 45 H 1.08996 * 109.64147 * 109.67101 * 26 7 5 46 46 H 1.09000 * 109.63715 * 349.05180 * 26 7 5 47 47 H 1.08003 * 125.79881 * 179.74194 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2849 1.0933 0.0000 4 6 3.6710 0.6030 -0.0006 5 6 4.9024 1.4126 -0.0003 6 8 4.8803 2.5531 -0.4222 7 7 6.0530 0.8893 0.4672 8 6 7.3228 1.6244 0.3539 9 6 7.9870 1.6636 1.7348 10 1 7.3869 2.2734 2.4102 11 6 9.3880 2.2660 1.6111 12 8 8.0831 0.3320 2.2494 13 6 6.8334 -0.3191 2.4291 14 6 7.0419 -1.7204 3.0461 15 6 7.1322 -1.3836 4.5566 16 7 6.1728 -0.2816 4.7574 17 6 5.5630 0.0403 5.9405 18 1 5.8320 -0.4823 6.8464 19 6 4.5990 1.0386 5.9752 20 7 4.3704 1.7702 4.9053 21 14 3.6262 1.3433 7.5405 22 1 4.2713 2.4299 8.3206 23 1 2.2387 1.7412 7.1915 24 1 3.5952 0.1013 8.3539 25 6 5.9793 0.4142 3.4749 26 6 6.0794 -0.4364 1.1085 27 6 3.5790 -0.7581 -0.0070 28 8 2.2853 -1.0935 -0.0006 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 1.9595 2.1230 -0.0004 33 1 7.9783 1.1162 -0.3534 34 1 7.1286 2.6399 0.0086 35 1 9.3144 3.2788 1.2148 36 1 9.8595 2.2940 2.5935 37 1 9.9881 1.6548 0.9370 38 1 6.1902 -2.3687 2.8405 39 1 7.9686 -2.1704 2.6898 40 1 6.8471 -2.2484 5.1556 41 1 8.1408 -1.0596 4.8132 42 1 3.6971 2.4680 4.9297 43 1 6.3070 1.4501 3.5615 44 1 4.9284 0.3775 3.1877 45 1 6.5882 -1.1479 0.4582 46 1 5.0598 -0.7724 1.2974 47 1 4.4104 -1.4475 -0.0131 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071162462.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:03 Heat of formation + Delta-G solvation = -15.183704 kcal Electronic energy + Delta-G solvation = -31060.238629 eV Core-core repulsion = 27018.552391 eV Total energy + Delta-G solvation = -4041.686238 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.50885 -40.32276 -38.42928 -36.20269 -34.67298 -33.18484 -32.92727 -32.00787 -31.34472 -29.27827 -28.05430 -27.29646 -26.05009 -25.89154 -23.90895 -22.84714 -21.51738 -20.91915 -20.37325 -19.30798 -18.92785 -17.20173 -16.87236 -16.56895 -16.27925 -16.12139 -15.82271 -15.18011 -14.69734 -14.41842 -14.13901 -13.94201 -13.71704 -13.36928 -13.22591 -13.10423 -13.06863 -12.79100 -12.74993 -12.36645 -12.31957 -12.09953 -11.78841 -11.76107 -11.56164 -11.50867 -10.93601 -10.91340 -10.77172 -10.58069 -10.41823 -10.15931 -10.02704 -9.75989 -9.71608 -9.54503 -9.30368 -8.62240 -8.46358 -8.18027 -6.83673 -5.72079 -3.04671 1.48142 2.17391 2.83339 3.02751 3.39432 3.44877 3.47076 3.51937 3.97633 4.48745 4.51790 4.67369 4.85977 4.95009 5.05042 5.14822 5.22634 5.31213 5.35404 5.37742 5.44871 5.47862 5.50603 5.56752 5.63503 5.63858 5.72000 5.79417 5.82592 5.86250 5.88955 6.03073 6.12515 6.20586 6.27046 6.31427 6.43200 6.46114 6.59773 6.63035 6.85602 7.08438 7.27584 7.49505 7.53291 7.76716 7.84039 8.22589 8.35905 9.19588 9.81330 10.47359 11.39572 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.008037 B = 0.005993 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3483.061661 B = 4670.748498 C = 6627.024137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.017 4.017 3 C -0.157 4.157 4 C -0.218 4.218 5 C 0.597 3.403 6 O -0.540 6.540 7 N -0.605 5.605 8 C 0.089 3.911 9 C 0.069 3.931 10 H 0.076 0.924 11 C -0.138 4.138 12 O -0.361 6.361 13 C 0.075 3.925 14 C -0.117 4.117 15 C 0.137 3.863 16 N -0.604 5.604 17 C -0.229 4.229 18 H 0.079 0.921 19 C -0.007 4.007 20 N -0.918 5.918 21 Si 0.908 3.092 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.169 3.831 26 C 0.078 3.922 27 C 0.006 3.994 28 O -0.173 6.173 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.157 0.843 33 H 0.071 0.929 34 H 0.099 0.901 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.041 0.959 41 H 0.023 0.977 42 H 0.252 0.748 43 H 0.048 0.952 44 H 0.053 0.947 45 H 0.072 0.928 46 H 0.104 0.896 47 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.555 -5.879 -12.703 14.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.065 4.065 3 C -0.177 4.177 4 C -0.222 4.222 5 C 0.387 3.613 6 O -0.418 6.418 7 N -0.338 5.338 8 C -0.033 4.033 9 C 0.010 3.990 10 H 0.094 0.906 11 C -0.195 4.195 12 O -0.280 6.280 13 C 0.034 3.966 14 C -0.156 4.156 15 C 0.011 3.989 16 N -0.331 5.331 17 C -0.357 4.357 18 H 0.097 0.903 19 C -0.203 4.203 20 N -0.565 5.565 21 Si 0.739 3.261 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.206 1.206 25 C 0.044 3.956 26 C -0.045 4.045 27 C -0.063 4.063 28 O -0.069 6.069 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.175 0.825 33 H 0.089 0.911 34 H 0.117 0.883 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.060 0.940 41 H 0.041 0.959 42 H 0.062 0.938 43 H 0.066 0.934 44 H 0.071 0.929 45 H 0.090 0.910 46 H 0.121 0.879 47 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 0.419 -5.476 -12.809 13.937 hybrid contribution -0.542 0.541 0.898 1.180 sum -0.123 -4.935 -11.911 12.893 Atomic orbital electron populations 1.20305 0.84793 1.04366 1.03322 1.22256 0.94085 0.83659 1.06513 1.22430 0.89835 0.99674 1.05756 1.21364 0.94619 0.93329 1.12893 1.17230 0.81687 0.85573 0.76845 1.90738 1.85064 1.17716 1.48331 1.47876 1.07550 1.19401 1.58949 1.22317 0.84048 0.98792 0.98155 1.22468 0.97530 0.85582 0.93373 0.90570 1.21669 0.94799 1.00082 1.02989 1.87753 1.28520 1.26894 1.84822 1.22655 0.85249 0.95045 0.93659 1.22682 1.01601 0.93578 0.97724 1.21567 0.93534 0.91493 0.92348 1.44468 1.49770 1.32486 1.06355 1.19041 1.14686 1.16233 0.85743 0.90343 1.24811 0.99536 0.98455 0.97505 1.69947 1.35909 1.23106 1.27575 0.86155 0.79700 0.77866 0.82407 1.21711 1.21682 1.20613 1.21561 0.96374 0.94593 0.83067 1.22792 1.02934 0.84176 0.94554 1.24756 0.84132 0.95536 1.01893 1.83715 1.16417 1.35496 1.71299 0.90186 0.90399 0.89185 0.82542 0.91067 0.88319 0.91151 0.91401 0.92066 0.90296 0.90767 0.94027 0.95886 0.93752 0.93424 0.92865 0.90950 0.87870 0.76788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.67 10.40 36.01 0.37 -0.30 16 2 C -0.02 -0.23 7.28 -35.74 -0.26 -0.49 16 3 C -0.16 -2.51 10.97 -37.45 -0.41 -2.92 16 4 C -0.22 -3.68 5.87 -103.27 -0.61 -4.29 16 5 C 0.60 11.20 7.68 -12.55 -0.10 11.11 16 6 O -0.54 -11.57 16.52 5.27 0.09 -11.48 16 7 N -0.60 -10.21 2.95 -173.92 -0.51 -10.72 16 8 C 0.09 1.38 5.93 -3.53 -0.02 1.36 16 9 C 0.07 1.15 3.17 -26.58 -0.08 1.07 16 10 H 0.08 1.55 6.25 -51.93 -0.32 1.23 16 11 C -0.14 -1.80 9.57 37.16 0.36 -1.45 16 12 O -0.36 -6.60 9.90 -35.23 -0.35 -6.95 16 13 C 0.07 1.38 0.81 -89.72 -0.07 1.31 16 14 C -0.12 -1.95 6.21 -24.86 -0.15 -2.11 16 15 C 0.14 2.82 7.24 -2.43 -0.02 2.80 16 16 N -0.60 -15.45 3.40 -170.24 -0.58 -16.02 16 17 C -0.23 -6.40 10.27 -15.06 -0.15 -6.56 16 18 H 0.08 2.12 7.84 -52.49 -0.41 1.71 16 19 C -0.01 -0.19 5.48 -17.43 -0.10 -0.28 16 20 N -0.92 -27.26 10.37 55.49 0.58 -26.69 16 21 Si 0.91 22.32 29.56 -169.99 -5.02 17.29 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 C 0.17 4.08 4.48 -3.33 -0.01 4.06 16 26 C 0.08 1.21 3.82 -3.85 -0.01 1.20 16 27 C 0.01 0.09 9.80 30.08 0.29 0.38 16 28 O -0.17 -2.45 10.52 7.65 0.08 -2.37 16 29 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.16 2.39 8.06 -52.49 -0.42 1.96 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.10 1.57 7.06 -51.93 -0.37 1.21 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.08 1.18 8.01 -51.93 -0.42 0.77 16 39 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 43 H 0.05 1.32 5.52 -51.93 -0.29 1.04 16 44 H 0.05 1.44 6.76 -51.92 -0.35 1.09 16 45 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.10 1.59 4.00 -51.93 -0.21 1.39 16 47 H 0.22 2.26 5.99 -52.48 -0.31 1.95 16 LS Contribution 370.83 15.07 5.59 5.59 Total: -1.00 -34.94 370.83 -8.00 -42.94 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -6.89 Total: 3.53 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: -0.98 Total: 4.89 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: -0.52 Total: -53.44 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: -0.18 Total: -20.81 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.94 -8.00 -42.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071162462.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.753 kcal (2) G-P(sol) polarization free energy of solvation -34.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds