Wall clock time and date at job start Tue Mar 31 2020 18:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34183 * 125.43738 * 2 1 4 4 C 1.47019 * 105.95472 * 180.02562 * 3 2 1 5 5 C 1.47372 * 127.19103 * 179.97438 * 4 3 2 6 6 O 1.21609 * 120.00099 * 222.25578 * 5 4 3 7 7 N 1.34777 * 120.00054 * 41.99082 * 5 4 3 8 8 C 1.46987 * 120.71684 * 354.00108 * 7 5 4 9 9 C 1.53153 * 108.43998 * 125.44973 * 8 7 5 10 10 C 1.52505 * 109.79584 * 54.52861 * 9 8 7 11 11 H 1.09001 * 108.93476 * 180.32665 * 10 9 8 12 12 O 1.42687 * 110.62670 * 61.27783 * 10 9 8 13 13 C 1.43064 * 113.87667 * 174.65917 * 12 10 9 14 14 C 1.53225 * 109.45214 * 61.64196 * 13 12 10 15 15 N 1.47169 * 108.69376 * 308.41520 * 14 13 12 16 16 C 1.36936 * 121.22693 * 230.97440 * 15 14 13 17 17 H 1.07999 * 119.99923 * 148.82142 * 16 15 14 18 18 C 1.38806 * 120.00205 * 328.82089 * 16 15 14 19 19 N 1.31617 * 119.99901 * 342.84658 * 18 16 15 20 20 Si 1.86801 * 120.00508 * 162.84888 * 18 16 15 21 21 H 1.48494 * 109.47253 * 89.99586 * 20 18 16 22 22 H 1.48493 * 109.47533 * 209.99992 * 20 18 16 23 23 H 1.48509 * 109.46904 * 330.00169 * 20 18 16 24 24 C 1.47594 * 117.54779 * 50.95316 * 15 14 13 25 25 H 1.08999 * 110.31638 * 187.68110 * 24 15 14 26 26 C 1.46791 * 120.72147 * 173.72979 * 7 5 4 27 27 C 1.36423 * 105.61449 * 0.23130 * 4 3 2 28 28 C 1.50695 * 125.79802 * 179.77476 * 27 4 3 29 29 O 1.33653 * 108.39720 * 359.62669 * 27 4 3 30 30 H 1.09001 * 109.47021 * 89.99969 * 1 2 3 31 31 H 1.09003 * 109.46745 * 209.99807 * 1 2 3 32 32 H 1.08999 * 109.47063 * 329.99982 * 1 2 3 33 33 H 1.08001 * 127.02027 * 0.07468 * 3 2 1 34 34 H 1.09000 * 109.64289 * 245.13906 * 8 7 5 35 35 H 1.08998 * 109.63821 * 5.55636 * 8 7 5 36 36 H 1.09003 * 109.41174 * 174.62362 * 9 8 7 37 37 H 1.09000 * 109.42277 * 294.42395 * 9 8 7 38 38 H 1.08995 * 109.47843 * 301.64191 * 13 12 10 39 39 H 1.09005 * 109.47824 * 181.63948 * 13 12 10 40 40 H 1.09003 * 109.59910 * 188.65305 * 14 13 12 41 41 H 1.08999 * 109.60069 * 68.17854 * 14 13 12 42 42 H 0.97007 * 120.00582 * 180.02562 * 19 18 16 43 43 H 1.09007 * 109.51921 * 354.20970 * 26 7 5 44 44 H 1.08994 * 109.52262 * 114.38966 * 26 7 5 45 45 H 1.08998 * 109.47589 * 90.00056 * 28 27 4 46 46 H 1.09002 * 109.46670 * 209.99739 * 28 27 4 47 47 H 1.09000 * 109.47293 * 329.99468 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0933 0.0000 4 6 3.6710 0.6029 -0.0006 5 6 4.9024 1.4126 -0.0014 6 8 5.8384 1.0952 -0.7100 7 7 4.9893 2.5078 0.7792 8 6 3.8233 2.9841 1.5370 9 6 4.2177 3.0971 3.0126 10 6 5.4562 3.9762 3.1503 11 1 5.7277 4.0423 4.2039 12 8 5.1934 5.2938 2.6696 13 6 6.2711 6.2115 2.8768 14 6 7.5090 5.7250 2.1160 15 7 7.7608 4.3199 2.4743 16 6 8.9979 3.9037 2.8884 17 1 9.0860 3.0889 3.5917 18 6 10.1387 4.5290 2.4042 19 7 10.0718 5.2722 1.3200 20 14 11.7688 4.3157 3.2912 21 1 12.4821 3.1361 2.7391 22 1 12.5997 5.5312 3.0991 23 1 11.5202 4.1099 4.7408 24 6 6.6308 3.3761 2.3713 25 1 6.9069 2.4081 2.7894 26 6 6.2519 3.2474 0.8958 27 6 3.5790 -0.7582 -0.0063 28 6 4.7390 -1.7201 -0.0138 29 8 2.2852 -1.0935 -0.0006 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.9595 2.1230 0.0011 34 1 3.5179 3.9615 1.1635 35 1 3.0013 2.2768 1.4274 36 1 3.3951 3.5393 3.5746 37 1 4.4325 2.1041 3.4074 38 1 6.4986 6.2706 3.9411 39 1 5.9842 7.1975 2.5113 40 1 8.3704 6.3329 2.3925 41 1 7.3328 5.8028 1.0432 42 1 10.8691 5.7089 0.9813 43 1 7.0384 2.7113 0.3646 44 1 6.1327 4.2416 0.4651 45 1 5.0218 -1.9565 1.0119 46 1 4.4490 -2.6349 -0.5308 47 1 5.5853 -1.2647 -0.5283 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074163797.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:04 Heat of formation + Delta-G solvation = -30.959977 kcal Electronic energy + Delta-G solvation = -30455.607140 eV Core-core repulsion = 26413.236792 eV Total energy + Delta-G solvation = -4042.370348 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.67784 -39.93447 -38.40497 -35.71908 -34.62998 -33.36006 -33.00452 -31.63876 -31.48095 -29.82295 -29.31159 -27.44156 -25.82050 -24.47929 -23.92644 -22.95256 -22.46049 -21.36492 -20.99520 -18.82712 -18.03548 -17.16928 -16.84765 -16.55897 -15.96885 -15.53005 -15.41591 -15.17547 -14.97589 -14.45574 -14.13460 -14.00340 -13.87211 -13.54424 -13.37843 -13.23164 -13.17368 -12.97693 -12.79170 -12.64652 -12.53351 -12.25176 -12.21215 -11.90267 -11.63267 -11.32298 -11.07584 -10.93869 -10.74446 -10.62110 -10.29325 -10.16939 -10.04572 -9.79422 -9.62710 -9.40150 -8.98012 -8.57807 -8.46170 -8.16697 -6.70469 -5.87575 -3.34919 1.46113 1.99313 2.63324 3.17616 3.33760 3.40699 3.42034 3.47539 4.32327 4.36577 4.41406 4.71709 4.78139 5.01196 5.04389 5.13930 5.16696 5.22540 5.29574 5.35201 5.36877 5.41648 5.46413 5.52885 5.61884 5.68613 5.79555 5.80746 5.88172 6.03840 6.06778 6.09625 6.10303 6.18005 6.24702 6.32026 6.37110 6.44267 6.72259 6.78110 6.97939 7.02495 7.05616 7.42312 7.72540 7.81426 7.88182 8.31910 8.52147 9.07713 9.68934 10.29759 11.19980 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017149 B = 0.003494 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.318359 B = 8011.377408 C = 9032.397801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.017 4.017 3 C -0.187 4.187 4 C -0.225 4.225 5 C 0.585 3.415 6 O -0.541 6.541 7 N -0.596 5.596 8 C 0.100 3.900 9 C -0.122 4.122 10 C 0.081 3.919 11 H 0.051 0.949 12 O -0.387 6.387 13 C 0.040 3.960 14 C 0.141 3.859 15 N -0.582 5.582 16 C -0.262 4.262 17 H 0.066 0.934 18 C 0.012 3.988 19 N -0.895 5.895 20 Si 0.904 3.096 21 H -0.285 1.285 22 H -0.289 1.289 23 H -0.278 1.278 24 C 0.135 3.865 25 H 0.074 0.926 26 C 0.108 3.892 27 C 0.059 3.941 28 C -0.084 4.084 29 O -0.177 6.177 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.159 0.841 34 H 0.073 0.927 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.041 0.959 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.031 0.969 42 H 0.256 0.744 43 H 0.089 0.911 44 H 0.069 0.931 45 H 0.085 0.915 46 H 0.079 0.921 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.090 -7.711 0.698 20.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.065 4.065 3 C -0.206 4.206 4 C -0.230 4.230 5 C 0.373 3.627 6 O -0.420 6.420 7 N -0.328 5.328 8 C -0.022 4.022 9 C -0.160 4.160 10 C 0.021 3.979 11 H 0.069 0.931 12 O -0.307 6.307 13 C -0.038 4.038 14 C 0.015 3.985 15 N -0.305 5.305 16 C -0.391 4.391 17 H 0.084 0.916 18 C -0.189 4.189 19 N -0.537 5.537 20 Si 0.733 3.267 21 H -0.212 1.212 22 H -0.215 1.215 23 H -0.204 1.204 24 C 0.026 3.974 25 H 0.092 0.908 26 C -0.015 4.015 27 C 0.007 3.993 28 C -0.140 4.140 29 O -0.074 6.074 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.108 0.892 33 H 0.177 0.823 34 H 0.092 0.908 35 H 0.111 0.889 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.059 0.941 39 H 0.099 0.901 40 H 0.103 0.897 41 H 0.049 0.951 42 H 0.066 0.934 43 H 0.108 0.892 44 H 0.087 0.913 45 H 0.104 0.896 46 H 0.098 0.902 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -18.677 -7.972 0.163 20.308 hybrid contribution 1.211 0.291 0.503 1.343 sum -17.466 -7.681 0.666 19.092 Atomic orbital electron populations 1.20313 0.84819 1.04114 1.03573 1.22206 0.93888 0.83791 1.06635 1.22626 0.90585 0.99430 1.07968 1.21197 0.94199 0.93306 1.14260 1.17287 0.85596 0.80072 0.79788 1.90776 1.39528 1.70742 1.40969 1.48113 1.12771 1.27061 1.44856 1.22014 0.88497 1.00484 0.91243 1.21785 0.97946 0.99561 0.96749 1.22248 0.94625 0.83743 0.97270 0.93119 1.87711 1.40394 1.19575 1.82986 1.23305 0.89216 0.91723 0.99559 1.21365 0.94776 0.86163 0.96178 1.44243 1.06335 1.02098 1.77807 1.19082 0.81965 1.18493 1.19558 0.91632 1.25167 0.97903 1.00304 0.95502 1.70038 1.28678 1.34862 1.20113 0.86296 0.83570 0.77334 0.79540 1.21161 1.21469 1.20356 1.21538 0.88705 0.94465 0.92681 0.90796 1.22243 0.83731 0.96045 0.99515 1.22598 0.82788 0.93821 1.00107 1.20562 0.92355 0.96948 1.04137 1.83665 1.16180 1.35488 1.72062 0.90097 0.90545 0.89185 0.82328 0.90844 0.88926 0.90562 0.90591 0.94088 0.90142 0.89651 0.95114 0.93407 0.89217 0.91319 0.89627 0.90245 0.87472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.44 10.40 36.01 0.37 -0.06 16 2 C -0.02 -0.18 7.28 -35.74 -0.26 -0.44 16 3 C -0.19 -2.21 8.59 -37.45 -0.32 -2.53 16 4 C -0.23 -3.35 5.55 -103.28 -0.57 -3.93 16 5 C 0.58 10.66 7.44 -12.54 -0.09 10.57 16 6 O -0.54 -11.74 15.19 5.27 0.08 -11.66 16 7 N -0.60 -10.51 2.97 -174.33 -0.52 -11.03 16 8 C 0.10 1.41 5.73 -3.70 -0.02 1.39 16 9 C -0.12 -1.70 5.82 -26.91 -0.16 -1.86 16 10 C 0.08 1.44 2.73 -26.89 -0.07 1.36 16 11 H 0.05 0.93 8.11 -51.93 -0.42 0.51 16 12 O -0.39 -7.22 9.59 -35.23 -0.34 -7.56 16 13 C 0.04 0.76 6.97 37.27 0.26 1.02 16 14 C 0.14 3.27 4.90 -3.56 -0.02 3.25 16 15 N -0.58 -14.29 2.68 -164.13 -0.44 -14.73 16 16 C -0.26 -7.07 9.63 -15.06 -0.15 -7.21 16 17 H 0.07 1.75 7.89 -52.49 -0.41 1.34 16 18 C 0.01 0.32 4.91 -17.43 -0.09 0.23 16 19 N -0.89 -25.58 11.54 55.49 0.64 -24.94 16 20 Si 0.90 21.42 29.59 -169.99 -5.03 16.39 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 C 0.13 2.84 3.01 -67.30 -0.20 2.63 16 25 H 0.07 1.60 7.99 -51.93 -0.42 1.19 16 26 C 0.11 2.28 5.59 -3.94 -0.02 2.26 16 27 C 0.06 0.79 7.37 -34.97 -0.26 0.53 16 28 C -0.08 -0.95 10.23 36.00 0.37 -0.58 16 29 O -0.18 -2.17 10.52 7.65 0.08 -2.09 16 30 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.16 1.57 7.09 -52.49 -0.37 1.20 16 34 H 0.07 1.04 7.94 -51.93 -0.41 0.63 16 35 H 0.09 1.11 3.82 -51.93 -0.20 0.91 16 36 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.04 0.77 8.13 -51.93 -0.42 0.35 16 39 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 40 H 0.09 2.17 6.53 -51.93 -0.34 1.83 16 41 H 0.03 0.77 7.17 -51.93 -0.37 0.39 16 42 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 43 H 0.09 2.19 7.04 -51.93 -0.37 1.83 16 44 H 0.07 1.55 6.54 -51.93 -0.34 1.21 16 45 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.11 1.43 6.77 -51.93 -0.35 1.08 16 LS Contribution 368.05 15.07 5.55 5.55 Total: -1.00 -32.37 368.05 -8.15 -40.51 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -6.94 Total: 2.93 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: -1.23 Total: 6.64 kcal Atomic # 7 Polarization: -50.38 SS G_CDS: -0.32 Total: -50.70 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: -0.18 Total: -21.31 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.37 -8.15 -40.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074163797.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.551 kcal (2) G-P(sol) polarization free energy of solvation -32.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds