Wall clock time and date at job start Tue Mar 31 2020 18:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34183 * 125.43738 * 2 1 4 4 C 1.47019 * 105.95472 * 180.02562 * 3 2 1 5 5 C 1.47372 * 127.19103 * 179.97438 * 4 3 2 6 6 O 1.21609 * 120.00099 * 222.25578 * 5 4 3 7 7 N 1.34777 * 120.00054 * 41.99082 * 5 4 3 8 8 C 1.46987 * 120.71684 * 354.00108 * 7 5 4 9 9 C 1.53153 * 108.43998 * 125.44973 * 8 7 5 10 10 C 1.52505 * 109.79584 * 54.52861 * 9 8 7 11 11 H 1.09001 * 108.93476 * 180.32665 * 10 9 8 12 12 O 1.42687 * 110.62670 * 61.27783 * 10 9 8 13 13 C 1.43064 * 113.87667 * 174.65917 * 12 10 9 14 14 C 1.53225 * 109.45214 * 61.64196 * 13 12 10 15 15 N 1.47169 * 108.69376 * 308.41520 * 14 13 12 16 16 C 1.36936 * 121.22693 * 230.97440 * 15 14 13 17 17 H 1.07999 * 119.99923 * 148.82142 * 16 15 14 18 18 C 1.38806 * 120.00205 * 328.82089 * 16 15 14 19 19 N 1.31617 * 119.99901 * 342.84658 * 18 16 15 20 20 Si 1.86801 * 120.00508 * 162.84888 * 18 16 15 21 21 H 1.48494 * 109.47253 * 89.99586 * 20 18 16 22 22 H 1.48493 * 109.47533 * 209.99992 * 20 18 16 23 23 H 1.48509 * 109.46904 * 330.00169 * 20 18 16 24 24 C 1.47594 * 117.54779 * 50.95316 * 15 14 13 25 25 H 1.08999 * 110.31638 * 187.68110 * 24 15 14 26 26 C 1.46791 * 120.72147 * 173.72979 * 7 5 4 27 27 C 1.36423 * 105.61449 * 0.23130 * 4 3 2 28 28 C 1.50695 * 125.79802 * 179.77476 * 27 4 3 29 29 O 1.33653 * 108.39720 * 359.62669 * 27 4 3 30 30 H 1.09001 * 109.47021 * 89.99969 * 1 2 3 31 31 H 1.09003 * 109.46745 * 209.99807 * 1 2 3 32 32 H 1.08999 * 109.47063 * 329.99982 * 1 2 3 33 33 H 1.08001 * 127.02027 * 0.07468 * 3 2 1 34 34 H 1.09000 * 109.64289 * 245.13906 * 8 7 5 35 35 H 1.08998 * 109.63821 * 5.55636 * 8 7 5 36 36 H 1.09003 * 109.41174 * 174.62362 * 9 8 7 37 37 H 1.09000 * 109.42277 * 294.42395 * 9 8 7 38 38 H 1.08995 * 109.47843 * 301.64191 * 13 12 10 39 39 H 1.09005 * 109.47824 * 181.63948 * 13 12 10 40 40 H 1.09003 * 109.59910 * 188.65305 * 14 13 12 41 41 H 1.08999 * 109.60069 * 68.17854 * 14 13 12 42 42 H 0.97007 * 120.00582 * 180.02562 * 19 18 16 43 43 H 1.09007 * 109.51921 * 354.20970 * 26 7 5 44 44 H 1.08994 * 109.52262 * 114.38966 * 26 7 5 45 45 H 1.08998 * 109.47589 * 90.00056 * 28 27 4 46 46 H 1.09002 * 109.46670 * 209.99739 * 28 27 4 47 47 H 1.09000 * 109.47293 * 329.99468 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0933 0.0000 4 6 3.6710 0.6029 -0.0006 5 6 4.9024 1.4126 -0.0014 6 8 5.8384 1.0952 -0.7100 7 7 4.9893 2.5078 0.7792 8 6 3.8233 2.9841 1.5370 9 6 4.2177 3.0971 3.0126 10 6 5.4562 3.9762 3.1503 11 1 5.7277 4.0423 4.2039 12 8 5.1934 5.2938 2.6696 13 6 6.2711 6.2115 2.8768 14 6 7.5090 5.7250 2.1160 15 7 7.7608 4.3199 2.4743 16 6 8.9979 3.9037 2.8884 17 1 9.0860 3.0889 3.5917 18 6 10.1387 4.5290 2.4042 19 7 10.0718 5.2722 1.3200 20 14 11.7688 4.3157 3.2912 21 1 12.4821 3.1361 2.7391 22 1 12.5997 5.5312 3.0991 23 1 11.5202 4.1099 4.7408 24 6 6.6308 3.3761 2.3713 25 1 6.9069 2.4081 2.7894 26 6 6.2519 3.2474 0.8958 27 6 3.5790 -0.7582 -0.0063 28 6 4.7390 -1.7201 -0.0138 29 8 2.2852 -1.0935 -0.0006 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.9595 2.1230 0.0011 34 1 3.5179 3.9615 1.1635 35 1 3.0013 2.2768 1.4274 36 1 3.3951 3.5393 3.5746 37 1 4.4325 2.1041 3.4074 38 1 6.4986 6.2706 3.9411 39 1 5.9842 7.1975 2.5113 40 1 8.3704 6.3329 2.3925 41 1 7.3328 5.8028 1.0432 42 1 10.8691 5.7089 0.9813 43 1 7.0384 2.7113 0.3646 44 1 6.1327 4.2416 0.4651 45 1 5.0218 -1.9565 1.0119 46 1 4.4490 -2.6349 -0.5308 47 1 5.5853 -1.2647 -0.5283 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074163797.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:02 Heat of formation + Delta-G solvation = -51.720537 kcal Electronic energy + Delta-G solvation = -30456.507386 eV Core-core repulsion = 26413.236792 eV Total energy + Delta-G solvation = -4043.270594 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -43.63472 -41.43744 -39.94326 -37.20796 -36.45196 -34.39275 -33.90294 -33.38507 -33.04112 -31.17718 -30.34035 -29.24585 -27.08528 -25.70672 -25.52229 -24.55769 -23.67013 -22.86668 -22.14080 -20.35394 -19.34429 -18.88636 -18.29172 -17.53558 -17.10675 -17.07543 -16.97949 -16.81444 -16.44399 -16.16985 -15.58610 -15.44398 -15.13150 -14.87783 -14.48462 -14.34882 -14.28557 -14.19051 -13.99395 -13.79626 -13.69055 -13.45077 -13.31369 -13.17353 -13.11711 -12.81674 -12.68952 -12.52168 -12.42674 -12.29456 -12.11552 -11.91599 -11.71510 -11.23131 -11.13527 -10.77386 -10.59655 -10.51090 -9.75154 -9.32996 -8.68807 -7.95605 -5.47128 0.40668 1.05274 1.42982 1.43729 1.53938 1.68171 1.86483 2.12182 2.44729 2.86880 3.19691 3.41585 3.46799 3.61050 3.84710 3.90679 4.00479 4.12035 4.15721 4.22275 4.25519 4.41367 4.46361 4.48629 4.54504 4.55328 4.58120 4.59908 4.68439 4.79222 4.81377 4.83532 4.87862 4.94101 4.96553 5.01572 5.04456 5.17452 5.20643 5.26125 5.43379 5.48455 5.51200 5.58673 6.07494 6.26129 6.33168 6.42385 7.01658 7.08900 7.67417 8.25447 9.09250 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017149 B = 0.003494 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.318359 B = 8011.377408 C = 9032.397801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.003 4.003 3 C -0.199 4.199 4 C -0.253 4.253 5 C 0.581 3.419 6 O -0.590 6.590 7 N -0.595 5.595 8 C 0.099 3.901 9 C -0.114 4.114 10 C 0.086 3.914 11 H 0.052 0.948 12 O -0.383 6.383 13 C 0.053 3.947 14 C 0.148 3.852 15 N -0.600 5.600 16 C -0.273 4.273 17 H 0.064 0.936 18 C -0.040 4.040 19 N -0.928 5.928 20 Si 0.969 3.031 21 H -0.287 1.287 22 H -0.289 1.289 23 H -0.266 1.266 24 C 0.133 3.867 25 H 0.062 0.938 26 C 0.127 3.873 27 C 0.057 3.943 28 C -0.084 4.084 29 O -0.177 6.177 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.113 0.887 33 H 0.179 0.821 34 H 0.077 0.923 35 H 0.123 0.877 36 H 0.114 0.886 37 H 0.086 0.914 38 H 0.049 0.951 39 H 0.110 0.890 40 H 0.058 0.942 41 H 0.002 0.998 42 H 0.253 0.747 43 H 0.042 0.958 44 H 0.050 0.950 45 H 0.099 0.901 46 H 0.105 0.895 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.752 -8.407 2.423 24.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.051 4.051 3 C -0.218 4.218 4 C -0.257 4.257 5 C 0.371 3.629 6 O -0.472 6.472 7 N -0.326 5.326 8 C -0.022 4.022 9 C -0.152 4.152 10 C 0.027 3.973 11 H 0.070 0.930 12 O -0.302 6.302 13 C -0.025 4.025 14 C 0.022 3.978 15 N -0.323 5.323 16 C -0.403 4.403 17 H 0.082 0.918 18 C -0.237 4.237 19 N -0.572 5.572 20 Si 0.796 3.204 21 H -0.214 1.214 22 H -0.215 1.215 23 H -0.191 1.191 24 C 0.025 3.975 25 H 0.080 0.920 26 C 0.002 3.998 27 C 0.005 3.995 28 C -0.140 4.140 29 O -0.074 6.074 30 H 0.113 0.887 31 H 0.107 0.893 32 H 0.131 0.869 33 H 0.197 0.803 34 H 0.096 0.904 35 H 0.141 0.859 36 H 0.132 0.868 37 H 0.104 0.896 38 H 0.067 0.933 39 H 0.128 0.872 40 H 0.077 0.923 41 H 0.020 0.980 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.068 0.932 45 H 0.117 0.883 46 H 0.123 0.877 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -22.405 -8.674 1.919 24.102 hybrid contribution 2.284 0.426 -0.104 2.326 sum -20.121 -8.248 1.815 21.822 Atomic orbital electron populations 1.20579 0.81297 1.05899 1.04998 1.23058 0.95556 0.82700 1.03806 1.22796 0.88815 1.00933 1.09209 1.21021 0.94034 0.93782 1.16877 1.17846 0.86270 0.79998 0.78778 1.90744 1.41658 1.71889 1.42936 1.48127 1.12491 1.26755 1.45264 1.22306 0.87645 1.01412 0.90795 1.21825 0.97004 0.99373 0.97020 1.22263 0.94992 0.83733 0.96302 0.92963 1.87728 1.39641 1.19729 1.83056 1.23156 0.87281 0.92828 0.99253 1.21215 0.95950 0.85492 0.95102 1.44480 1.06607 1.03317 1.77926 1.19388 0.83370 1.18250 1.19316 0.91789 1.25931 1.01119 1.00441 0.96182 1.70189 1.29241 1.36146 1.21635 0.85271 0.79387 0.76852 0.78863 1.21385 1.21459 1.19083 1.21660 0.89238 0.93747 0.92860 0.91972 1.21674 0.84542 0.94589 0.98954 1.22819 0.83739 0.93650 0.99336 1.20577 0.91053 0.97425 1.04967 1.83708 1.15615 1.36288 1.71799 0.88703 0.89293 0.86866 0.80341 0.90433 0.85940 0.86807 0.89574 0.93289 0.87226 0.92340 0.98023 0.93845 0.93915 0.93210 0.88303 0.87670 0.90202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.54 10.40 71.24 0.74 0.20 16 2 C 0.00 -0.05 7.28 24.76 0.18 0.13 16 3 C -0.20 -4.13 8.59 23.65 0.20 -3.93 16 4 C -0.25 -7.33 5.55 -18.99 -0.11 -7.43 16 5 C 0.58 21.86 7.44 86.65 0.64 22.51 16 6 O -0.59 -27.42 15.19 -4.06 -0.06 -27.49 16 7 N -0.59 -21.30 2.97 -823.71 -2.44 -23.75 16 8 C 0.10 2.56 5.73 86.34 0.49 3.05 16 9 C -0.11 -2.81 5.82 30.48 0.18 -2.64 16 10 C 0.09 2.95 2.73 30.49 0.08 3.04 16 11 H 0.05 1.81 8.11 -2.39 -0.02 1.79 16 12 O -0.38 -13.56 9.59 -148.98 -1.43 -14.98 16 13 C 0.05 1.95 6.97 72.06 0.50 2.45 16 14 C 0.15 7.13 4.90 86.33 0.42 7.55 16 15 N -0.60 -30.63 2.68 -673.19 -1.81 -32.43 16 16 C -0.27 -15.30 9.63 84.03 0.81 -14.49 16 17 H 0.06 3.52 7.89 -2.91 -0.02 3.50 16 18 C -0.04 -2.25 4.91 84.86 0.42 -1.83 16 19 N -0.93 -55.60 11.54 21.65 0.25 -55.35 16 20 Si 0.97 45.25 29.59 68.60 2.03 47.28 16 21 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 22 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 23 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 24 C 0.13 5.75 3.01 44.81 0.13 5.89 16 25 H 0.06 2.80 7.99 -2.39 -0.02 2.78 16 26 C 0.13 5.69 5.59 86.28 0.48 6.18 16 27 C 0.06 1.47 7.37 25.26 0.19 1.66 16 28 C -0.08 -1.89 10.23 71.23 0.73 -1.16 16 29 O -0.18 -3.89 10.52 4.45 0.05 -3.84 16 30 H 0.09 0.53 8.14 -2.39 -0.02 0.52 16 31 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.18 2.87 7.09 -2.91 -0.02 2.85 16 34 H 0.08 1.98 7.94 -2.39 -0.02 1.96 16 35 H 0.12 2.50 3.82 -2.39 -0.01 2.49 16 36 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.05 1.76 8.13 -2.39 -0.02 1.74 16 39 H 0.11 3.44 8.14 -2.38 -0.02 3.42 16 40 H 0.06 3.10 6.53 -2.39 -0.02 3.09 16 41 H 0.00 0.09 7.17 -2.39 -0.02 0.07 16 42 H 0.25 14.63 8.31 -92.70 -0.77 13.85 16 43 H 0.04 2.28 7.04 -2.38 -0.02 2.26 16 44 H 0.05 2.38 6.54 -2.39 -0.02 2.37 16 45 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 46 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 47 H 0.08 2.27 6.77 -2.39 -0.02 2.25 16 Total: -1.00 -76.02 368.05 3.67 -72.34 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: 0.98 Total: 17.04 kcal Atomic # 6 Polarization: 15.08 SS G_CDS: 6.10 Total: 21.18 kcal Atomic # 7 Polarization: -107.53 SS G_CDS: -4.00 Total: -111.53 kcal Atomic # 8 Polarization: -44.87 SS G_CDS: -1.44 Total: -46.31 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -76.02 3.67 -72.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074163797.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.624 kcal (2) G-P(sol) polarization free energy of solvation -76.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds