Wall clock time and date at job start Tue Mar 31 2020 18:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34184 * 125.43569 * 2 1 4 4 C 1.47012 * 105.95599 * 180.12575 * 3 2 1 5 5 C 1.47378 * 127.19401 * 179.89104 * 4 3 2 6 6 O 1.21622 * 119.99933 * 215.58468 * 5 4 3 7 7 N 1.34770 * 120.00341 * 35.58586 * 5 4 3 8 8 C 1.46846 * 120.40588 * 353.13250 * 7 5 4 9 9 C 1.53367 * 109.24563 * 127.77212 * 8 7 5 10 10 C 1.52781 * 108.81963 * 53.83749 * 9 8 7 11 11 H 1.08996 * 109.34865 * 57.15361 * 10 9 8 12 12 O 1.42610 * 111.11413 * 177.47309 * 10 9 8 13 13 C 1.43144 * 113.63271 * 183.61140 * 12 10 9 14 14 C 1.53202 * 109.73752 * 298.30647 * 13 12 10 15 15 N 1.47343 * 108.80089 * 51.21385 * 14 13 12 16 16 C 1.36942 * 121.30473 * 129.73120 * 15 14 13 17 17 H 1.08000 * 120.00375 * 205.49149 * 16 15 14 18 18 C 1.38809 * 119.99733 * 25.50232 * 16 15 14 19 19 N 1.31620 * 120.00158 * 12.65665 * 18 16 15 20 20 Si 1.86798 * 120.00092 * 192.66432 * 18 16 15 21 21 H 1.48500 * 109.47540 * 93.93460 * 20 18 16 22 22 H 1.48500 * 109.47297 * 213.93731 * 20 18 16 23 23 H 1.48504 * 109.47095 * 333.93559 * 20 18 16 24 24 C 1.46870 * 117.39237 * 309.76059 * 15 14 13 25 25 H 1.09006 * 110.20472 * 292.02856 * 24 15 14 26 26 C 1.47124 * 120.41629 * 173.15838 * 7 5 4 27 27 C 1.36422 * 105.61620 * 359.62818 * 4 3 2 28 28 C 1.50694 * 125.80392 * 180.22797 * 27 4 3 29 29 O 1.33656 * 108.39180 * 0.22708 * 27 4 3 30 30 H 1.09001 * 109.46466 * 180.26837 * 1 2 3 31 31 H 1.08996 * 109.47096 * 300.26646 * 1 2 3 32 32 H 1.08999 * 109.47268 * 60.27017 * 1 2 3 33 33 H 1.07998 * 127.02381 * 0.02562 * 3 2 1 34 34 H 1.08999 * 109.50931 * 7.84166 * 8 7 5 35 35 H 1.09001 * 109.50924 * 247.70343 * 8 7 5 36 36 H 1.09004 * 109.58073 * 294.03357 * 9 8 7 37 37 H 1.09000 * 109.58058 * 173.63634 * 9 8 7 38 38 H 1.08999 * 109.42337 * 178.22531 * 13 12 10 39 39 H 1.08993 * 109.38579 * 58.35908 * 13 12 10 40 40 H 1.09004 * 109.58141 * 291.42176 * 14 13 12 41 41 H 1.08993 * 109.69562 * 171.08014 * 14 13 12 42 42 H 0.97001 * 120.00062 * 180.02562 * 19 18 16 43 43 H 1.09005 * 109.73202 * 113.54343 * 26 7 5 44 44 H 1.09001 * 109.72664 * 352.87168 * 26 7 5 45 45 H 1.08993 * 109.47528 * 89.99918 * 28 27 4 46 46 H 1.09003 * 109.47041 * 209.99842 * 28 27 4 47 47 H 1.09010 * 109.47124 * 329.99577 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0933 0.0000 4 6 3.6709 0.6030 -0.0031 5 6 4.9024 1.4128 -0.0065 6 8 5.8796 1.0308 -0.6216 7 7 4.9456 2.5764 0.6719 8 6 3.7309 3.1209 1.2919 9 6 4.0123 3.4327 2.7669 10 6 5.2400 4.3379 2.8538 11 1 5.0651 5.2407 2.2686 12 8 5.5118 4.7066 4.2044 13 6 6.6038 5.6220 4.3406 14 6 7.8897 4.9752 3.8158 15 7 7.6366 4.4429 2.4654 16 6 8.4713 4.7314 1.4189 17 1 8.0968 4.7050 0.4062 18 6 9.7989 5.0575 1.6596 19 7 10.3220 4.8511 2.8496 20 14 10.8432 5.7894 0.2946 21 1 10.8086 7.2712 0.3852 22 1 12.2441 5.3174 0.4358 23 1 10.3071 5.3614 -1.0225 24 6 6.4536 3.5913 2.2856 25 1 6.5848 2.6478 2.8156 26 6 6.2103 3.3173 0.8002 27 6 3.5790 -0.7581 0.0039 28 6 4.7391 -1.7200 0.0088 29 8 2.2852 -1.0934 0.0056 30 1 -0.3632 -1.0277 0.0048 31 1 -0.3633 0.5179 0.8876 32 1 -0.3634 0.5096 -0.8924 33 1 1.9595 2.1231 0.0004 34 1 2.9267 2.3885 1.2216 35 1 3.4375 4.0353 0.7761 36 1 4.2036 2.5050 3.3063 37 1 3.1523 3.9406 3.2035 38 1 6.7310 5.8807 5.3918 39 1 6.3925 6.5250 3.7680 40 1 8.1869 4.1628 4.4790 41 1 8.6841 5.7202 3.7719 42 1 11.2496 5.0793 3.0179 43 1 6.1406 4.2607 0.2587 44 1 7.0287 2.7206 0.3973 45 1 5.0188 -1.9466 1.0375 46 1 4.4506 -2.6396 -0.5003 47 1 5.5869 -1.2694 -0.5074 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074163799.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:14 Heat of formation + Delta-G solvation = -24.103633 kcal Electronic energy + Delta-G solvation = -30334.916569 eV Core-core repulsion = 26292.843534 eV Total energy + Delta-G solvation = -4042.073035 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.75329 -39.96003 -38.43941 -36.06337 -34.73845 -33.46619 -33.05168 -31.66905 -31.35878 -29.98818 -29.46690 -27.15244 -25.96042 -24.71956 -23.94712 -22.98750 -22.06778 -21.37280 -20.70132 -19.63682 -18.26382 -17.21994 -16.82004 -16.56562 -16.16836 -15.65436 -15.34857 -15.14016 -14.96998 -14.48047 -14.20099 -13.86087 -13.79239 -13.58221 -13.44159 -13.37261 -13.14480 -13.03989 -12.84169 -12.81422 -12.67646 -12.40827 -12.23573 -11.81088 -11.64540 -11.30554 -10.99559 -10.95412 -10.80552 -10.58839 -10.24402 -10.18032 -9.97265 -9.85424 -9.64886 -9.50548 -8.97925 -8.54408 -8.53623 -8.28480 -6.75328 -5.82179 -3.28446 1.38393 1.89560 2.57804 3.08111 3.35800 3.36117 3.43516 3.45244 4.25380 4.32273 4.43534 4.65308 4.70595 4.94355 4.95330 5.05940 5.13496 5.21200 5.29738 5.32288 5.38461 5.40007 5.43122 5.44871 5.54994 5.61911 5.72799 5.75721 5.81032 5.91551 5.95906 6.06334 6.12946 6.15967 6.18228 6.28270 6.35306 6.48791 6.64537 6.72152 6.88247 6.95569 7.17059 7.55913 7.63846 7.70728 7.91461 8.32715 8.39139 9.11028 9.73684 10.29917 11.24869 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015381 B = 0.003601 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.994831 B = 7774.635648 C = 8902.716193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.014 4.014 3 C -0.193 4.193 4 C -0.230 4.230 5 C 0.589 3.411 6 O -0.537 6.537 7 N -0.601 5.601 8 C 0.091 3.909 9 C -0.123 4.123 10 C 0.077 3.923 11 H 0.051 0.949 12 O -0.390 6.390 13 C 0.039 3.961 14 C 0.139 3.861 15 N -0.589 5.589 16 C -0.254 4.254 17 H 0.074 0.926 18 C 0.003 3.997 19 N -0.905 5.905 20 Si 0.906 3.094 21 H -0.287 1.287 22 H -0.290 1.290 23 H -0.277 1.277 24 C 0.138 3.862 25 H 0.036 0.964 26 C 0.125 3.875 27 C 0.066 3.934 28 C -0.086 4.086 29 O -0.176 6.176 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.163 0.837 34 H 0.107 0.893 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.040 0.960 40 H 0.026 0.974 41 H 0.104 0.896 42 H 0.255 0.745 43 H 0.073 0.927 44 H 0.102 0.898 45 H 0.086 0.914 46 H 0.079 0.921 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.757 -7.211 -2.524 21.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.063 4.063 3 C -0.212 4.212 4 C -0.234 4.234 5 C 0.377 3.623 6 O -0.416 6.416 7 N -0.334 5.334 8 C -0.032 4.032 9 C -0.162 4.162 10 C 0.017 3.983 11 H 0.069 0.931 12 O -0.310 6.310 13 C -0.039 4.039 14 C 0.014 3.986 15 N -0.313 5.313 16 C -0.383 4.383 17 H 0.092 0.908 18 C -0.195 4.195 19 N -0.550 5.550 20 Si 0.736 3.264 21 H -0.214 1.214 22 H -0.216 1.216 23 H -0.202 1.202 24 C 0.030 3.970 25 H 0.054 0.946 26 C 0.003 3.997 27 C 0.014 3.986 28 C -0.142 4.142 29 O -0.073 6.073 30 H 0.095 0.905 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.181 0.819 34 H 0.125 0.875 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.058 0.942 40 H 0.044 0.956 41 H 0.122 0.878 42 H 0.065 0.935 43 H 0.091 0.909 44 H 0.120 0.880 45 H 0.105 0.895 46 H 0.098 0.902 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -19.241 -7.719 -2.665 20.902 hybrid contribution 0.829 0.853 -0.640 1.351 sum -18.412 -6.866 -3.305 19.927 Atomic orbital electron populations 1.20332 0.84762 1.04102 1.03759 1.22237 0.93937 0.83775 1.06312 1.22676 0.90665 0.99467 1.08352 1.21147 0.94030 0.93317 1.14899 1.17247 0.86076 0.80165 0.78777 1.90778 1.36721 1.70962 1.43117 1.48049 1.10628 1.22086 1.52607 1.22304 0.88170 0.99937 0.92755 1.21845 0.97920 1.00465 0.95950 1.22439 0.94731 0.96762 0.84338 0.93057 1.87738 1.52172 1.65264 1.25799 1.23351 0.88828 0.91569 1.00166 1.21555 0.93879 0.98315 0.84882 1.44054 1.26039 1.54193 1.07029 1.19219 0.89724 1.41832 0.87551 0.90829 1.25050 0.96308 1.01162 0.96980 1.69976 1.13362 1.50471 1.21178 0.86205 0.79791 0.78878 0.81542 1.21442 1.21621 1.20212 1.21276 0.88635 0.93646 0.93453 0.94622 1.21791 0.84531 0.96307 0.97060 1.22641 0.82795 0.93848 0.99352 1.20608 0.92370 0.96911 1.04302 1.83685 1.16195 1.35537 1.71853 0.90537 0.89466 0.89568 0.81930 0.87524 0.91377 0.90950 0.90371 0.90108 0.94182 0.95609 0.87772 0.93498 0.90913 0.87989 0.89522 0.90224 0.87222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.41 10.40 36.01 0.37 -0.04 16 2 C -0.01 -0.14 7.28 -35.74 -0.26 -0.40 16 3 C -0.19 -2.13 8.61 -37.46 -0.32 -2.45 16 4 C -0.23 -3.28 5.73 -103.28 -0.59 -3.88 16 5 C 0.59 10.28 7.49 -12.54 -0.09 10.19 16 6 O -0.54 -11.09 14.93 5.26 0.08 -11.01 16 7 N -0.60 -10.09 2.98 -173.97 -0.52 -10.61 16 8 C 0.09 1.18 5.74 -3.66 -0.02 1.16 16 9 C -0.12 -1.77 5.82 -26.65 -0.16 -1.93 16 10 C 0.08 1.43 2.48 -26.63 -0.07 1.36 16 11 H 0.05 0.96 8.13 -51.93 -0.42 0.54 16 12 O -0.39 -7.81 10.49 -35.23 -0.37 -8.18 16 13 C 0.04 0.77 6.95 37.26 0.26 1.03 16 14 C 0.14 3.36 5.45 -3.48 -0.02 3.34 16 15 N -0.59 -14.76 3.05 -164.35 -0.50 -15.26 16 16 C -0.25 -6.84 8.94 -15.06 -0.13 -6.97 16 17 H 0.07 1.93 6.21 -52.49 -0.33 1.61 16 18 C 0.00 0.09 5.07 -17.43 -0.09 0.01 16 19 N -0.91 -25.94 10.84 55.49 0.60 -25.34 16 20 Si 0.91 21.70 29.57 -169.99 -5.03 16.68 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 C 0.14 2.98 3.02 -67.52 -0.20 2.77 16 25 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 26 C 0.12 2.50 4.45 -3.71 -0.02 2.49 16 27 C 0.07 0.86 7.37 -34.97 -0.26 0.61 16 28 C -0.09 -0.96 10.22 36.00 0.37 -0.59 16 29 O -0.18 -2.09 10.52 7.67 0.08 -2.01 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.16 1.42 6.54 -52.49 -0.34 1.08 16 34 H 0.11 1.17 3.36 -51.93 -0.17 1.00 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 39 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.10 2.73 5.96 -51.93 -0.31 2.42 16 42 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 43 H 0.07 1.46 7.39 -51.93 -0.38 1.08 16 44 H 0.10 2.34 6.83 -51.93 -0.35 1.99 16 45 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.11 1.44 6.58 -51.92 -0.34 1.09 16 LS Contribution 365.76 15.07 5.51 5.51 Total: -1.00 -32.79 365.76 -8.24 -41.03 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -6.86 Total: 2.50 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: -1.23 Total: 6.69 kcal Atomic # 7 Polarization: -50.79 SS G_CDS: -0.42 Total: -51.21 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: -0.21 Total: -21.20 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.79 -8.24 -41.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074163799.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.924 kcal (2) G-P(sol) polarization free energy of solvation -32.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds