Wall clock time and date at job start Tue Mar 31 2020 18:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34184 * 125.43569 * 2 1 4 4 C 1.47012 * 105.95599 * 180.12575 * 3 2 1 5 5 C 1.47378 * 127.19401 * 179.89104 * 4 3 2 6 6 O 1.21622 * 119.99933 * 215.58468 * 5 4 3 7 7 N 1.34770 * 120.00341 * 35.58586 * 5 4 3 8 8 C 1.46846 * 120.40588 * 353.13250 * 7 5 4 9 9 C 1.53367 * 109.24563 * 127.77212 * 8 7 5 10 10 C 1.52781 * 108.81963 * 53.83749 * 9 8 7 11 11 H 1.08996 * 109.34865 * 57.15361 * 10 9 8 12 12 O 1.42610 * 111.11413 * 177.47309 * 10 9 8 13 13 C 1.43144 * 113.63271 * 183.61140 * 12 10 9 14 14 C 1.53202 * 109.73752 * 298.30647 * 13 12 10 15 15 N 1.47343 * 108.80089 * 51.21385 * 14 13 12 16 16 C 1.36942 * 121.30473 * 129.73120 * 15 14 13 17 17 H 1.08000 * 120.00375 * 205.49149 * 16 15 14 18 18 C 1.38809 * 119.99733 * 25.50232 * 16 15 14 19 19 N 1.31620 * 120.00158 * 12.65665 * 18 16 15 20 20 Si 1.86798 * 120.00092 * 192.66432 * 18 16 15 21 21 H 1.48500 * 109.47540 * 93.93460 * 20 18 16 22 22 H 1.48500 * 109.47297 * 213.93731 * 20 18 16 23 23 H 1.48504 * 109.47095 * 333.93559 * 20 18 16 24 24 C 1.46870 * 117.39237 * 309.76059 * 15 14 13 25 25 H 1.09006 * 110.20472 * 292.02856 * 24 15 14 26 26 C 1.47124 * 120.41629 * 173.15838 * 7 5 4 27 27 C 1.36422 * 105.61620 * 359.62818 * 4 3 2 28 28 C 1.50694 * 125.80392 * 180.22797 * 27 4 3 29 29 O 1.33656 * 108.39180 * 0.22708 * 27 4 3 30 30 H 1.09001 * 109.46466 * 180.26837 * 1 2 3 31 31 H 1.08996 * 109.47096 * 300.26646 * 1 2 3 32 32 H 1.08999 * 109.47268 * 60.27017 * 1 2 3 33 33 H 1.07998 * 127.02381 * 0.02562 * 3 2 1 34 34 H 1.08999 * 109.50931 * 7.84166 * 8 7 5 35 35 H 1.09001 * 109.50924 * 247.70343 * 8 7 5 36 36 H 1.09004 * 109.58073 * 294.03357 * 9 8 7 37 37 H 1.09000 * 109.58058 * 173.63634 * 9 8 7 38 38 H 1.08999 * 109.42337 * 178.22531 * 13 12 10 39 39 H 1.08993 * 109.38579 * 58.35908 * 13 12 10 40 40 H 1.09004 * 109.58141 * 291.42176 * 14 13 12 41 41 H 1.08993 * 109.69562 * 171.08014 * 14 13 12 42 42 H 0.97001 * 120.00062 * 180.02562 * 19 18 16 43 43 H 1.09005 * 109.73202 * 113.54343 * 26 7 5 44 44 H 1.09001 * 109.72664 * 352.87168 * 26 7 5 45 45 H 1.08993 * 109.47528 * 89.99918 * 28 27 4 46 46 H 1.09003 * 109.47041 * 209.99842 * 28 27 4 47 47 H 1.09010 * 109.47124 * 329.99577 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0933 0.0000 4 6 3.6709 0.6030 -0.0031 5 6 4.9024 1.4128 -0.0065 6 8 5.8796 1.0308 -0.6216 7 7 4.9456 2.5764 0.6719 8 6 3.7309 3.1209 1.2919 9 6 4.0123 3.4327 2.7669 10 6 5.2400 4.3379 2.8538 11 1 5.0651 5.2407 2.2686 12 8 5.5118 4.7066 4.2044 13 6 6.6038 5.6220 4.3406 14 6 7.8897 4.9752 3.8158 15 7 7.6366 4.4429 2.4654 16 6 8.4713 4.7314 1.4189 17 1 8.0968 4.7050 0.4062 18 6 9.7989 5.0575 1.6596 19 7 10.3220 4.8511 2.8496 20 14 10.8432 5.7894 0.2946 21 1 10.8086 7.2712 0.3852 22 1 12.2441 5.3174 0.4358 23 1 10.3071 5.3614 -1.0225 24 6 6.4536 3.5913 2.2856 25 1 6.5848 2.6478 2.8156 26 6 6.2103 3.3173 0.8002 27 6 3.5790 -0.7581 0.0039 28 6 4.7391 -1.7200 0.0088 29 8 2.2852 -1.0934 0.0056 30 1 -0.3632 -1.0277 0.0048 31 1 -0.3633 0.5179 0.8876 32 1 -0.3634 0.5096 -0.8924 33 1 1.9595 2.1231 0.0004 34 1 2.9267 2.3885 1.2216 35 1 3.4375 4.0353 0.7761 36 1 4.2036 2.5050 3.3063 37 1 3.1523 3.9406 3.2035 38 1 6.7310 5.8807 5.3918 39 1 6.3925 6.5250 3.7680 40 1 8.1869 4.1628 4.4790 41 1 8.6841 5.7202 3.7719 42 1 11.2496 5.0793 3.0179 43 1 6.1406 4.2607 0.2587 44 1 7.0287 2.7206 0.3973 45 1 5.0188 -1.9466 1.0375 46 1 4.4506 -2.6396 -0.5003 47 1 5.5869 -1.2694 -0.5074 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074163799.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:13 Heat of formation + Delta-G solvation = -45.602407 kcal Electronic energy + Delta-G solvation = -30335.848826 eV Core-core repulsion = 26292.843534 eV Total energy + Delta-G solvation = -4043.005292 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.66222 -41.41224 -39.98307 -37.50915 -36.59037 -34.49012 -33.89864 -33.32382 -32.96715 -31.45404 -30.36727 -28.95772 -27.30123 -25.97629 -25.37605 -24.31614 -23.49736 -22.59550 -22.05851 -21.34056 -19.41061 -18.70629 -18.41803 -17.53669 -17.37286 -17.14359 -16.80821 -16.73826 -16.36706 -16.16413 -15.63684 -15.45085 -15.15552 -14.76810 -14.69598 -14.48508 -14.34392 -14.19790 -14.11120 -13.79455 -13.71621 -13.45268 -13.28684 -13.14351 -12.97703 -12.88868 -12.63459 -12.53579 -12.42703 -12.26566 -12.06314 -11.93159 -11.74548 -11.30141 -11.14151 -10.77882 -10.61521 -10.54017 -9.78778 -9.32559 -8.78737 -7.91849 -5.41598 0.35861 1.02962 1.43458 1.44811 1.53816 1.63736 1.84973 2.10952 2.45046 2.80944 3.22299 3.41609 3.43215 3.58913 3.80594 3.87811 3.92352 4.02947 4.14784 4.19165 4.23158 4.37419 4.43033 4.49195 4.52333 4.53221 4.53672 4.55523 4.63945 4.69079 4.78275 4.83093 4.84127 4.92214 4.96715 5.04011 5.04917 5.12183 5.19279 5.27342 5.39662 5.47143 5.55710 5.59966 6.05783 6.22872 6.32359 6.34398 7.02926 7.03880 7.69955 8.23811 9.13230 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015381 B = 0.003601 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.994831 B = 7774.635648 C = 8902.716193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.004 4.004 3 C -0.201 4.201 4 C -0.256 4.256 5 C 0.584 3.416 6 O -0.583 6.583 7 N -0.601 5.601 8 C 0.090 3.910 9 C -0.114 4.114 10 C 0.081 3.919 11 H 0.058 0.942 12 O -0.393 6.393 13 C 0.051 3.949 14 C 0.143 3.857 15 N -0.606 5.606 16 C -0.260 4.260 17 H 0.076 0.924 18 C -0.050 4.050 19 N -0.936 5.936 20 Si 0.969 3.031 21 H -0.279 1.279 22 H -0.295 1.295 23 H -0.272 1.272 24 C 0.136 3.864 25 H 0.004 0.996 26 C 0.140 3.860 27 C 0.059 3.941 28 C -0.086 4.086 29 O -0.178 6.178 30 H 0.084 0.916 31 H 0.109 0.891 32 H 0.105 0.895 33 H 0.190 0.810 34 H 0.135 0.865 35 H 0.094 0.906 36 H 0.061 0.939 37 H 0.116 0.884 38 H 0.109 0.891 39 H 0.050 0.950 40 H -0.006 1.006 41 H 0.080 0.920 42 H 0.251 0.749 43 H 0.073 0.927 44 H 0.062 0.938 45 H 0.094 0.906 46 H 0.105 0.895 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.850 -6.693 -2.871 24.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.052 4.052 3 C -0.220 4.220 4 C -0.260 4.260 5 C 0.374 3.626 6 O -0.465 6.465 7 N -0.333 5.333 8 C -0.031 4.031 9 C -0.152 4.152 10 C 0.022 3.978 11 H 0.076 0.924 12 O -0.312 6.312 13 C -0.026 4.026 14 C 0.018 3.982 15 N -0.331 5.331 16 C -0.389 4.389 17 H 0.093 0.907 18 C -0.245 4.245 19 N -0.583 5.583 20 Si 0.797 3.203 21 H -0.205 1.205 22 H -0.222 1.222 23 H -0.197 1.197 24 C 0.028 3.972 25 H 0.022 0.978 26 C 0.017 3.983 27 C 0.006 3.994 28 C -0.142 4.142 29 O -0.075 6.075 30 H 0.103 0.897 31 H 0.127 0.873 32 H 0.123 0.877 33 H 0.207 0.793 34 H 0.153 0.847 35 H 0.112 0.888 36 H 0.080 0.920 37 H 0.134 0.866 38 H 0.127 0.873 39 H 0.068 0.932 40 H 0.012 0.988 41 H 0.098 0.902 42 H 0.061 0.939 43 H 0.091 0.909 44 H 0.080 0.920 45 H 0.112 0.888 46 H 0.123 0.877 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -23.402 -7.195 -3.001 24.667 hybrid contribution 2.056 0.587 -0.535 2.204 sum -21.347 -6.609 -3.536 22.624 Atomic orbital electron populations 1.20592 0.81297 1.05312 1.05673 1.23115 0.95615 0.82778 1.03683 1.22890 0.88693 1.01139 1.09249 1.21037 0.94148 0.93711 1.17104 1.17787 0.86716 0.80154 0.77913 1.90747 1.38708 1.71914 1.45094 1.48096 1.10572 1.21873 1.52730 1.22661 0.86958 1.01738 0.91727 1.21869 0.97043 0.99290 0.97028 1.22514 0.94562 0.97236 0.83482 0.92448 1.87747 1.51545 1.65215 1.26660 1.23199 0.86478 0.91195 1.01766 1.21417 0.95766 0.96781 0.84286 1.44338 1.26861 1.54959 1.06936 1.19509 0.90226 1.40920 0.88261 0.90671 1.25806 0.97482 1.02099 0.99082 1.70141 1.13351 1.51879 1.22915 0.85224 0.77661 0.78318 0.79109 1.20513 1.22195 1.19682 1.21399 0.89064 0.92372 0.94339 0.97826 1.21318 0.85432 0.95820 0.95717 1.22839 0.83711 0.93815 0.99023 1.20598 0.91273 0.97535 1.04789 1.83720 1.15649 1.36473 1.71660 0.89743 0.87280 0.87692 0.79326 0.84747 0.88788 0.91989 0.86586 0.87289 0.93206 0.98773 0.90170 0.93929 0.90861 0.91963 0.88750 0.87666 0.89775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.48 10.40 71.24 0.74 0.26 16 2 C 0.00 -0.06 7.28 24.76 0.18 0.12 16 3 C -0.20 -3.80 8.61 23.65 0.20 -3.59 16 4 C -0.26 -7.08 5.73 -18.99 -0.11 -7.19 16 5 C 0.58 20.79 7.49 86.65 0.65 21.43 16 6 O -0.58 -25.51 14.93 -4.10 -0.06 -25.57 16 7 N -0.60 -20.08 2.98 -822.56 -2.45 -22.53 16 8 C 0.09 2.07 5.74 86.44 0.50 2.56 16 9 C -0.11 -2.94 5.82 30.64 0.18 -2.76 16 10 C 0.08 2.90 2.48 30.66 0.08 2.97 16 11 H 0.06 2.01 8.13 -2.39 -0.02 1.99 16 12 O -0.39 -15.07 10.49 -148.98 -1.56 -16.63 16 13 C 0.05 2.00 6.95 72.05 0.50 2.50 16 14 C 0.14 7.14 5.45 86.29 0.47 7.61 16 15 N -0.61 -31.49 3.05 -673.89 -2.06 -33.55 16 16 C -0.26 -14.45 8.94 84.03 0.75 -13.69 16 17 H 0.08 4.08 6.21 -2.91 -0.02 4.06 16 18 C -0.05 -2.81 5.07 84.86 0.43 -2.38 16 19 N -0.94 -55.91 10.84 21.65 0.23 -55.67 16 20 Si 0.97 45.79 29.57 68.60 2.03 47.82 16 21 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 22 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 23 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 24 C 0.14 6.03 3.02 45.05 0.14 6.16 16 25 H 0.00 0.20 8.14 -2.38 -0.02 0.19 16 26 C 0.14 5.83 4.45 86.26 0.38 6.21 16 27 C 0.06 1.49 7.37 25.26 0.19 1.68 16 28 C -0.09 -1.94 10.22 71.23 0.73 -1.21 16 29 O -0.18 -3.83 10.52 4.52 0.05 -3.78 16 30 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.19 2.41 6.54 -2.91 -0.02 2.39 16 34 H 0.14 2.43 3.36 -2.39 -0.01 2.42 16 35 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.11 3.63 8.14 -2.39 -0.02 3.61 16 39 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 40 H -0.01 -0.32 8.14 -2.38 -0.02 -0.34 16 41 H 0.08 4.38 5.96 -2.39 -0.01 4.37 16 42 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 43 H 0.07 3.00 7.39 -2.38 -0.02 2.99 16 44 H 0.06 3.06 6.83 -2.39 -0.02 3.05 16 45 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 46 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 47 H 0.08 2.36 6.58 -2.38 -0.02 2.35 16 Total: -1.00 -76.47 365.76 3.17 -73.31 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: 0.99 Total: 15.91 kcal Atomic # 6 Polarization: 14.70 SS G_CDS: 6.00 Total: 20.70 kcal Atomic # 7 Polarization: -107.48 SS G_CDS: -4.27 Total: -111.75 kcal Atomic # 8 Polarization: -44.41 SS G_CDS: -1.58 Total: -45.98 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -76.47 3.17 -73.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074163799.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.703 kcal (2) G-P(sol) polarization free energy of solvation -76.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds