Wall clock time and date at job start Tue Mar 31 2020 18:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34183 * 125.43435 * 2 1 4 4 C 1.47026 * 105.95053 * 180.14047 * 3 2 1 5 5 C 1.47377 * 127.18995 * 179.83368 * 4 3 2 6 6 O 1.21612 * 120.00141 * 150.42896 * 5 4 3 7 7 N 1.34777 * 119.99829 * 330.42202 * 5 4 3 8 8 C 1.46976 * 120.72306 * 3.70046 * 7 5 4 9 9 C 1.51059 * 108.67346 * 234.00398 * 8 7 5 10 10 C 1.52510 * 110.93000 * 306.36584 * 9 8 7 11 11 H 1.09003 * 108.40844 * 178.25950 * 10 9 8 12 12 O 1.42685 * 110.62233 * 297.63574 * 10 9 8 13 13 C 1.43080 * 113.87347 * 185.34870 * 12 10 9 14 14 C 1.53228 * 109.44500 * 298.35058 * 13 12 10 15 15 N 1.47173 * 108.69313 * 51.58431 * 14 13 12 16 16 C 1.36945 * 121.22313 * 129.02530 * 15 14 13 17 17 H 1.08004 * 119.99879 * 202.19906 * 16 15 14 18 18 C 1.38805 * 120.00024 * 22.19893 * 16 15 14 19 19 N 1.31617 * 120.00255 * 19.45345 * 18 16 15 20 20 Si 1.86804 * 120.00229 * 199.45077 * 18 16 15 21 21 H 1.48506 * 109.46938 * 359.97438 * 20 18 16 22 22 H 1.48491 * 109.47291 * 119.99976 * 20 18 16 23 23 H 1.48505 * 109.47087 * 240.00336 * 20 18 16 24 24 C 1.47587 * 117.55045 * 309.04611 * 15 14 13 25 25 H 1.09002 * 110.31794 * 172.31000 * 24 15 14 26 26 C 1.46798 * 120.71877 * 183.71829 * 7 5 4 27 27 C 1.36417 * 105.61326 * 359.57006 * 4 3 2 28 28 C 1.50708 * 125.79776 * 180.26135 * 27 4 3 29 29 O 1.33647 * 108.40191 * 0.26178 * 27 4 3 30 30 H 1.09000 * 109.46746 * 180.36438 * 1 2 3 31 31 H 1.08993 * 109.47380 * 300.36496 * 1 2 3 32 32 H 1.09004 * 109.46985 * 60.37037 * 1 2 3 33 33 H 1.08001 * 127.02506 * 359.97438 * 3 2 1 34 34 H 1.09004 * 109.63955 * 354.24170 * 8 7 5 35 35 H 1.08992 * 109.64260 * 114.87614 * 8 7 5 36 36 H 1.09005 * 109.71078 * 185.36648 * 9 8 7 37 37 H 1.09001 * 107.97984 * 66.25378 * 9 8 7 38 38 H 1.08999 * 109.47605 * 58.34490 * 13 12 10 39 39 H 1.09003 * 109.47756 * 178.35925 * 13 12 10 40 40 H 1.09000 * 109.60441 * 291.82451 * 14 13 12 41 41 H 1.09000 * 109.59880 * 171.34832 * 14 13 12 42 42 H 0.97004 * 120.00168 * 180.02562 * 19 18 16 43 43 H 1.09001 * 109.52173 * 5.77987 * 26 7 5 44 44 H 1.08992 * 109.52798 * 245.58997 * 26 7 5 45 45 H 1.09002 * 109.46796 * 90.00166 * 28 27 4 46 46 H 1.08999 * 109.46938 * 209.99908 * 28 27 4 47 47 H 1.08997 * 109.47110 * 330.00040 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0933 0.0000 4 6 3.6710 0.6029 -0.0035 5 6 4.9024 1.4126 -0.0082 6 8 5.9153 0.9820 0.5091 7 7 4.9061 2.6303 -0.5860 8 6 3.6717 3.2001 -1.1443 9 6 3.9263 3.5915 -2.5809 10 6 5.1423 4.5055 -2.6892 11 1 5.3066 4.7365 -3.7418 12 8 4.9215 5.7222 -1.9773 13 6 5.9706 6.6826 -2.1326 14 6 7.2778 6.1036 -1.5813 15 7 7.4997 4.7804 -2.1861 16 6 8.6931 4.4612 -2.7772 17 1 8.7381 3.6683 -3.5091 18 6 9.8448 5.1566 -2.4356 19 7 9.8939 5.8356 -1.3092 20 14 11.3251 5.1289 -3.5746 21 1 11.0168 4.2990 -4.7669 22 1 11.6452 6.5138 -4.0042 23 1 12.4904 4.5511 -2.8579 24 6 6.3887 3.8104 -2.1326 25 1 6.6272 2.9286 -2.7274 26 6 6.1431 3.4160 -0.6716 27 6 3.5790 -0.7581 0.0046 28 6 4.7391 -1.7201 0.0104 29 8 2.2853 -1.0935 0.0066 30 1 -0.3633 -1.0277 0.0065 31 1 -0.3634 0.5194 0.8866 32 1 -0.3633 0.5081 -0.8933 33 1 1.9595 2.1231 -0.0004 34 1 2.8722 2.4608 -1.0957 35 1 3.3891 4.0876 -0.5782 36 1 3.0517 4.1028 -2.9832 37 1 4.1061 2.6801 -3.1511 38 1 6.0946 6.9178 -3.1896 39 1 5.7162 7.5905 -1.5857 40 1 7.2053 6.0030 -0.4983 41 1 8.1063 6.7651 -1.8347 42 1 10.6986 6.3219 -1.0706 43 1 6.9799 2.8184 -0.3100 44 1 6.0466 4.3150 -0.0630 45 1 5.0187 -1.9459 1.0395 46 1 4.4507 -2.6402 -0.4979 47 1 5.5869 -1.2700 -0.5060 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074163800.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:20 Heat of formation + Delta-G solvation = -20.336610 kcal Electronic energy + Delta-G solvation = -30432.763879 eV Core-core repulsion = 26390.854194 eV Total energy + Delta-G solvation = -4041.909685 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -42.72115 -39.97330 -38.40428 -35.83317 -34.65819 -33.42951 -33.01092 -31.67204 -31.49090 -29.86415 -29.30550 -27.46094 -25.89958 -24.49449 -23.95851 -22.95934 -22.49783 -21.33592 -21.09960 -18.81351 -18.03498 -17.16001 -16.85954 -16.59425 -16.05837 -15.58318 -15.39782 -15.18405 -14.97034 -14.44084 -14.17353 -14.01901 -13.85653 -13.55478 -13.39619 -13.28798 -13.22497 -12.98746 -12.79574 -12.66234 -12.53646 -12.24746 -12.21816 -11.81807 -11.67127 -11.29379 -11.07295 -10.90826 -10.73631 -10.55727 -10.23146 -10.17460 -9.95271 -9.81305 -9.63560 -9.41086 -9.01445 -8.59938 -8.48934 -8.15592 -6.80818 -5.86070 -3.26067 1.41274 1.92579 2.60932 3.24408 3.34520 3.42315 3.44412 3.49244 4.32368 4.34396 4.41865 4.69597 4.75440 4.97378 5.00417 5.13182 5.15789 5.24701 5.29081 5.32535 5.35771 5.42674 5.44817 5.52103 5.59610 5.67878 5.76607 5.80430 5.89020 6.02021 6.06440 6.07656 6.11111 6.18114 6.21936 6.33584 6.36283 6.44773 6.69623 6.74858 6.95124 7.01808 7.10928 7.49795 7.70271 7.80291 7.90163 8.28012 8.51487 9.08218 9.70872 10.26295 11.21214 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017508 B = 0.003438 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.904021 B = 8141.339933 C = 9169.216052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.016 4.016 3 C -0.194 4.194 4 C -0.227 4.227 5 C 0.583 3.417 6 O -0.543 6.543 7 N -0.595 5.595 8 C 0.087 3.913 9 C -0.123 4.123 10 C 0.082 3.918 11 H 0.051 0.949 12 O -0.388 6.388 13 C 0.040 3.960 14 C 0.134 3.866 15 N -0.584 5.584 16 C -0.252 4.252 17 H 0.071 0.929 18 C 0.002 3.998 19 N -0.900 5.900 20 Si 0.905 3.095 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.290 1.290 24 C 0.135 3.865 25 H 0.073 0.927 26 C 0.106 3.894 27 C 0.064 3.936 28 C -0.075 4.075 29 O -0.176 6.176 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.167 0.833 34 H 0.105 0.895 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.041 0.959 39 H 0.080 0.920 40 H 0.027 0.973 41 H 0.102 0.898 42 H 0.255 0.745 43 H 0.089 0.911 44 H 0.068 0.932 45 H 0.090 0.910 46 H 0.076 0.924 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.332 -8.568 0.345 21.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.064 4.064 3 C -0.213 4.213 4 C -0.232 4.232 5 C 0.371 3.629 6 O -0.422 6.422 7 N -0.327 5.327 8 C -0.036 4.036 9 C -0.162 4.162 10 C 0.023 3.977 11 H 0.069 0.931 12 O -0.307 6.307 13 C -0.038 4.038 14 C 0.008 3.992 15 N -0.307 5.307 16 C -0.381 4.381 17 H 0.089 0.911 18 C -0.197 4.197 19 N -0.544 5.544 20 Si 0.735 3.265 21 H -0.202 1.202 22 H -0.215 1.215 23 H -0.216 1.216 24 C 0.026 3.974 25 H 0.091 0.909 26 C -0.017 4.017 27 C 0.012 3.988 28 C -0.131 4.131 29 O -0.074 6.074 30 H 0.094 0.906 31 H 0.104 0.896 32 H 0.105 0.895 33 H 0.184 0.816 34 H 0.123 0.877 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.059 0.941 39 H 0.099 0.901 40 H 0.045 0.955 41 H 0.120 0.880 42 H 0.065 0.935 43 H 0.108 0.892 44 H 0.086 0.914 45 H 0.108 0.892 46 H 0.094 0.906 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -18.869 -8.920 0.771 20.886 hybrid contribution 1.118 0.432 -0.637 1.357 sum -17.752 -8.489 0.134 19.677 Atomic orbital electron populations 1.20327 0.84794 1.04046 1.03757 1.22253 0.93922 0.83792 1.06468 1.22803 0.90838 0.99502 1.08153 1.21217 0.94092 0.93241 1.14635 1.17260 0.86385 0.80826 0.78394 1.90783 1.34198 1.71336 1.45858 1.48041 1.10806 1.16781 1.57086 1.21991 0.87655 0.99534 0.94394 1.21426 0.98419 0.99034 0.97285 1.22199 0.94599 0.85682 0.95250 0.93055 1.87713 1.44789 1.25723 1.72465 1.23327 0.89753 0.90878 0.99857 1.21557 0.94569 0.87837 0.95211 1.44366 1.10954 1.08307 1.67027 1.19252 0.84570 1.18540 1.15721 0.91087 1.24958 0.97268 1.01174 0.96273 1.70050 1.28046 1.35854 1.20482 0.86181 0.82551 0.77416 0.80400 1.20239 1.21498 1.21648 1.21548 0.88847 0.93126 0.93831 0.90915 1.22306 0.84993 0.94876 0.99573 1.22659 0.82778 0.93965 0.99437 1.20466 0.91749 0.96423 1.04440 1.83678 1.16192 1.35550 1.71937 0.90575 0.89570 0.89504 0.81571 0.87741 0.91036 0.90437 0.90792 0.94108 0.90138 0.95466 0.88021 0.93503 0.89239 0.91379 0.89183 0.90553 0.88244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.43 10.40 36.01 0.37 -0.05 16 2 C -0.02 -0.16 7.28 -35.74 -0.26 -0.42 16 3 C -0.19 -2.24 8.68 -37.45 -0.33 -2.57 16 4 C -0.23 -3.35 5.85 -103.27 -0.60 -3.95 16 5 C 0.58 10.52 7.50 -12.54 -0.09 10.43 16 6 O -0.54 -11.55 15.21 5.27 0.08 -11.47 16 7 N -0.59 -10.42 2.96 -175.32 -0.52 -10.94 16 8 C 0.09 1.20 5.52 -4.76 -0.03 1.18 16 9 C -0.12 -1.71 5.67 -27.96 -0.16 -1.87 16 10 C 0.08 1.48 2.72 -26.89 -0.07 1.40 16 11 H 0.05 0.95 8.13 -51.93 -0.42 0.53 16 12 O -0.39 -7.29 9.72 -35.23 -0.34 -7.63 16 13 C 0.04 0.76 6.98 37.28 0.26 1.02 16 14 C 0.13 3.14 5.03 -3.56 -0.02 3.12 16 15 N -0.58 -14.41 2.75 -163.87 -0.45 -14.86 16 16 C -0.25 -6.82 9.71 -15.06 -0.15 -6.97 16 17 H 0.07 1.90 7.90 -52.48 -0.41 1.49 16 18 C 0.00 0.05 4.93 -17.43 -0.09 -0.04 16 19 N -0.90 -25.67 11.01 55.49 0.61 -25.05 16 20 Si 0.90 21.52 29.60 -169.99 -5.03 16.49 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 C 0.14 2.85 2.97 -67.08 -0.20 2.65 16 25 H 0.07 1.58 7.99 -51.93 -0.42 1.16 16 26 C 0.11 2.22 5.67 -3.72 -0.02 2.20 16 27 C 0.06 0.85 7.37 -34.96 -0.26 0.59 16 28 C -0.07 -0.84 9.78 36.01 0.35 -0.48 16 29 O -0.18 -2.13 10.52 7.66 0.08 -2.05 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.17 1.59 6.19 -52.49 -0.32 1.26 16 34 H 0.11 1.21 3.11 -51.93 -0.16 1.05 16 35 H 0.07 1.01 7.99 -51.93 -0.42 0.59 16 36 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 40 H 0.03 0.68 7.26 -51.93 -0.38 0.31 16 41 H 0.10 2.63 5.89 -51.93 -0.31 2.33 16 42 H 0.25 7.02 8.31 -40.82 -0.34 6.69 16 43 H 0.09 2.15 7.02 -51.93 -0.36 1.79 16 44 H 0.07 1.52 6.72 -51.93 -0.35 1.17 16 45 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.10 1.27 7.34 -51.93 -0.38 0.89 16 LS Contribution 366.31 15.07 5.52 5.52 Total: -1.00 -32.38 366.31 -8.21 -40.58 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -6.87 Total: 3.15 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: -1.28 Total: 6.25 kcal Atomic # 7 Polarization: -50.49 SS G_CDS: -0.36 Total: -50.85 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -0.18 Total: -21.15 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.38 -8.21 -40.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074163800.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.248 kcal (2) G-P(sol) polarization free energy of solvation -32.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds