Wall clock time and date at job start Tue Mar 31 2020 18:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34514 * 125.78645 * 2 1 4 4 C 1.41382 * 106.84038 * 179.75474 * 3 2 1 5 5 C 1.34518 * 106.84031 * 0.36918 * 4 3 2 6 6 C 1.50692 * 125.78943 * 179.89599 * 5 4 3 7 7 C 1.50704 * 109.47690 * 89.71577 * 6 5 4 8 8 O 1.21282 * 119.99547 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00504 * 180.02562 * 7 6 5 10 10 C 1.46982 * 120.71814 * 359.97438 * 9 7 6 11 11 C 1.53164 * 108.61695 * 125.54478 * 10 9 7 12 12 C 1.52503 * 109.79267 * 54.41866 * 11 10 9 13 13 H 1.09002 * 108.93611 * 180.32578 * 12 11 10 14 14 O 1.42694 * 110.62563 * 60.62202 * 12 11 10 15 15 C 1.43079 * 113.86785 * 174.64225 * 14 12 11 16 16 C 1.53223 * 109.44986 * 61.64770 * 15 14 12 17 17 N 1.47177 * 108.70208 * 308.42281 * 16 15 14 18 18 C 1.36936 * 121.22923 * 230.96623 * 17 16 15 19 19 H 1.07991 * 120.00452 * 153.55627 * 18 17 16 20 20 C 1.38813 * 119.99505 * 333.55197 * 18 17 16 21 21 N 1.31618 * 120.00382 * 343.45461 * 20 18 17 22 22 Si 1.86797 * 119.99800 * 163.44949 * 20 18 17 23 23 H 1.48502 * 109.47096 * 60.00467 * 22 20 18 24 24 H 1.48502 * 109.47140 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47368 * 300.00210 * 22 20 18 26 26 C 1.47505 * 117.03101 * 51.36965 * 17 16 15 27 27 H 1.09004 * 109.76282 * 186.94148 * 26 17 16 28 28 C 1.46839 * 120.75108 * 179.70453 * 9 7 6 29 29 O 1.34303 * 125.79001 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.46747 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46955 * 299.99737 * 1 2 3 32 32 H 1.08994 * 109.47100 * 60.00253 * 1 2 3 33 33 H 1.07999 * 126.58150 * 359.95568 * 3 2 1 34 34 H 1.08002 * 126.58443 * 180.24057 * 4 3 2 35 35 H 1.09004 * 109.47613 * 329.71492 * 6 5 4 36 36 H 1.08997 * 109.47089 * 209.71581 * 6 5 4 37 37 H 1.08999 * 109.64339 * 5.75151 * 10 9 7 38 38 H 1.09003 * 109.63934 * 245.33241 * 10 9 7 39 39 H 1.08996 * 109.41517 * 174.51883 * 11 10 9 40 40 H 1.08994 * 109.41366 * 294.32002 * 11 10 9 41 41 H 1.09004 * 109.47311 * 181.63632 * 15 14 12 42 42 H 1.09001 * 109.47273 * 301.64905 * 15 14 12 43 43 H 1.08995 * 109.60312 * 68.18560 * 16 15 14 44 44 H 1.09001 * 109.60262 * 188.50533 * 16 15 14 45 45 H 0.97004 * 120.00347 * 179.97438 * 21 20 18 46 46 H 1.09002 * 109.34248 * 114.31116 * 28 9 7 47 47 H 1.09000 * 109.58783 * 354.25695 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6308 0.6322 0.0058 5 6 3.5814 -0.7121 0.0007 6 6 4.7706 -1.6377 0.0018 7 6 5.1662 -1.9459 1.4229 8 8 4.5439 -1.4613 2.3442 9 7 6.2120 -2.7593 1.6701 10 6 6.9775 -3.3548 0.5657 11 6 8.4577 -3.0099 0.7550 12 6 8.9165 -3.4469 2.1422 13 1 9.9688 -3.1899 2.2640 14 8 8.7629 -4.8566 2.3015 15 6 9.2852 -5.3601 3.5347 16 6 8.5338 -4.7196 4.7064 17 7 8.5460 -3.2582 4.5325 18 6 8.9446 -2.4261 5.5444 19 1 9.3545 -1.4539 5.3142 20 6 8.8218 -2.8324 6.8660 21 7 8.0426 -3.8479 7.1727 22 14 9.7625 -1.9381 8.2093 23 1 9.3538 -0.5106 8.2334 24 1 9.4622 -2.5616 9.5232 25 1 11.2198 -2.0313 7.9393 26 6 8.1022 -2.7347 3.2268 27 1 8.2736 -1.6591 3.1834 28 6 6.6156 -3.0656 3.0483 29 8 2.2925 -1.0894 0.0005 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.9665 2.1204 -0.0007 34 1 4.5212 1.2434 0.0110 35 1 5.6044 -1.1587 -0.5116 36 1 4.5111 -2.5633 -0.5120 37 1 6.6256 -2.9509 -0.3836 38 1 6.8497 -4.4373 0.5732 39 1 9.0495 -3.5253 -0.0015 40 1 8.5953 -1.9338 0.6501 41 1 9.1570 -6.4421 3.5688 42 1 10.3454 -5.1172 3.6064 43 1 7.5044 -5.0775 4.7201 44 1 9.0249 -4.9827 5.6433 45 1 7.9570 -4.1320 8.0962 46 1 6.4518 -4.1251 3.2455 47 1 6.0237 -2.4700 3.7434 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074219755.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:25 Heat of formation + Delta-G solvation = -31.736989 kcal Electronic energy + Delta-G solvation = -29867.846147 eV Core-core repulsion = 25825.442105 eV Total energy + Delta-G solvation = -4042.404042 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.57507 -40.09980 -38.56618 -35.75206 -34.65811 -33.18509 -33.07880 -31.79916 -31.51926 -30.20265 -29.30148 -27.41672 -25.55915 -24.38510 -23.76935 -22.75294 -21.79429 -21.48676 -20.35621 -19.42036 -18.28458 -17.27138 -16.89706 -16.61668 -15.95060 -15.56924 -15.40548 -15.30891 -15.09065 -14.56002 -14.41906 -14.20554 -13.74422 -13.52559 -13.36669 -13.18526 -13.07173 -12.87499 -12.79247 -12.59194 -12.39824 -12.28240 -12.14616 -11.98318 -11.64876 -11.36793 -11.08309 -10.97181 -10.76109 -10.61263 -10.28463 -10.20359 -10.01106 -9.83943 -9.65556 -9.55809 -9.01638 -8.60708 -8.26367 -8.24153 -6.77214 -5.87432 -3.31998 1.68410 2.59139 2.79313 2.89396 3.32503 3.36259 3.40446 3.42127 4.30189 4.39948 4.47841 4.67733 4.82545 4.93160 5.01434 5.03469 5.11666 5.19280 5.27783 5.28033 5.31582 5.35276 5.41879 5.53713 5.61756 5.73721 5.75821 5.82958 5.96379 5.98809 6.03031 6.06903 6.13564 6.15593 6.28584 6.34039 6.42478 6.55152 6.65995 6.74070 6.93563 7.07359 7.18376 7.47314 7.69185 7.71368 7.86949 8.28635 8.43777 9.06900 9.68668 10.26903 11.19965 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014174 B = 0.003157 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.001531 B = 8867.595342 C =10089.010476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.016 4.016 3 C -0.211 4.211 4 C -0.194 4.194 5 C 0.008 3.992 6 C -0.060 4.060 7 C 0.509 3.491 8 O -0.531 6.531 9 N -0.605 5.605 10 C 0.111 3.889 11 C -0.123 4.123 12 C 0.080 3.920 13 H 0.053 0.947 14 O -0.388 6.388 15 C 0.040 3.960 16 C 0.136 3.864 17 N -0.583 5.583 18 C -0.256 4.256 19 H 0.069 0.931 20 C 0.006 3.994 21 N -0.900 5.900 22 Si 0.907 3.093 23 H -0.281 1.281 24 H -0.289 1.289 25 H -0.283 1.283 26 C 0.134 3.866 27 H 0.073 0.927 28 C 0.107 3.893 29 O -0.171 6.171 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.146 0.854 34 H 0.146 0.854 35 H 0.121 0.879 36 H 0.108 0.892 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.041 0.959 43 H 0.028 0.972 44 H 0.095 0.905 45 H 0.257 0.743 46 H 0.069 0.931 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.121 2.813 -18.583 19.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.067 4.067 3 C -0.230 4.230 4 C -0.213 4.213 5 C -0.042 4.042 6 C -0.100 4.100 7 C 0.296 3.704 8 O -0.407 6.407 9 N -0.339 5.339 10 C -0.012 4.012 11 C -0.162 4.162 12 C 0.020 3.980 13 H 0.071 0.929 14 O -0.307 6.307 15 C -0.038 4.038 16 C 0.010 3.990 17 N -0.305 5.305 18 C -0.385 4.385 19 H 0.086 0.914 20 C -0.193 4.193 21 N -0.543 5.543 22 Si 0.736 3.264 23 H -0.207 1.207 24 H -0.215 1.215 25 H -0.209 1.209 26 C 0.025 3.975 27 H 0.091 0.909 28 C -0.016 4.016 29 O -0.067 6.067 30 H 0.093 0.907 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.163 0.837 34 H 0.164 0.836 35 H 0.139 0.861 36 H 0.126 0.874 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.099 0.901 42 H 0.059 0.941 43 H 0.047 0.953 44 H 0.113 0.887 45 H 0.067 0.933 46 H 0.087 0.913 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.662 2.586 -17.980 19.348 hybrid contribution 0.734 0.700 1.097 1.494 sum -5.928 3.286 -16.883 18.193 Atomic orbital electron populations 1.20277 0.85299 1.03903 1.03352 1.22367 0.93900 0.84200 1.06195 1.21488 0.92706 0.99264 1.09591 1.21475 0.98209 0.93678 1.07942 1.21485 0.82577 0.93904 1.06245 1.20161 0.93343 0.99784 0.96679 1.20297 0.80511 0.79061 0.90539 1.90751 1.52631 1.51245 1.46070 1.48277 1.30101 1.47081 1.08457 1.21677 0.91296 0.99330 0.88946 1.21799 0.95947 1.01512 0.96901 1.22247 0.98806 0.82706 0.94195 0.92910 1.87710 1.82573 1.21369 1.39073 1.23324 0.97272 0.97619 0.85557 1.21474 0.97853 0.83286 0.96393 1.44303 1.74707 1.01560 1.09962 1.19113 1.34639 0.99925 0.84860 0.91366 1.25079 0.98103 0.98699 0.97437 1.70008 1.37165 1.29082 1.18068 0.86300 0.79783 0.79299 0.80974 1.20735 1.21523 1.20943 1.21599 0.90963 0.97384 0.87561 0.90875 1.22309 0.97488 1.01564 0.80278 1.83925 1.16260 1.35107 1.71457 0.90697 0.89743 0.89881 0.83654 0.83626 0.86066 0.87351 0.90395 0.90419 0.90324 0.90415 0.90141 0.94095 0.95349 0.88654 0.93347 0.91307 0.89317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.59 10.42 36.01 0.38 -0.22 16 2 C -0.02 -0.21 7.32 -35.62 -0.26 -0.47 16 3 C -0.21 -2.64 10.81 -39.70 -0.43 -3.07 16 4 C -0.19 -2.60 10.81 -39.70 -0.43 -3.03 16 5 C 0.01 0.12 5.81 -35.63 -0.21 -0.09 16 6 C -0.06 -0.70 4.58 -29.04 -0.13 -0.84 16 7 C 0.51 8.47 7.70 -10.98 -0.08 8.38 16 8 O -0.53 -11.51 15.45 5.56 0.09 -11.42 16 9 N -0.61 -9.74 2.97 -172.72 -0.51 -10.26 16 10 C 0.11 1.33 6.16 -3.69 -0.02 1.30 16 11 C -0.12 -1.52 5.83 -26.90 -0.16 -1.68 16 12 C 0.08 1.36 2.76 -26.89 -0.07 1.29 16 13 H 0.05 0.94 8.12 -51.93 -0.42 0.51 16 14 O -0.39 -7.00 9.51 -35.23 -0.33 -7.34 16 15 C 0.04 0.75 6.97 37.27 0.26 1.01 16 16 C 0.14 3.13 4.91 -3.56 -0.02 3.12 16 17 N -0.58 -14.20 2.73 -163.92 -0.45 -14.65 16 18 C -0.26 -6.91 9.72 -15.06 -0.15 -7.05 16 19 H 0.07 1.81 7.88 -52.49 -0.41 1.40 16 20 C 0.01 0.17 4.96 -17.43 -0.09 0.08 16 21 N -0.90 -25.66 11.14 55.49 0.62 -25.04 16 22 Si 0.91 21.52 29.58 -169.99 -5.03 16.49 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 C 0.13 2.74 3.01 -67.11 -0.20 2.54 16 27 H 0.07 1.55 7.99 -51.93 -0.41 1.14 16 28 C 0.11 2.18 5.61 -3.68 -0.02 2.16 16 29 O -0.17 -2.54 10.65 5.70 0.06 -2.48 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.15 1.44 8.06 -52.49 -0.42 1.02 16 34 H 0.15 1.69 8.06 -52.49 -0.42 1.27 16 35 H 0.12 1.02 7.71 -51.93 -0.40 0.62 16 36 H 0.11 1.02 7.93 -51.93 -0.41 0.60 16 37 H 0.08 0.64 5.95 -51.93 -0.31 0.33 16 38 H 0.08 0.97 7.94 -51.93 -0.41 0.56 16 39 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 42 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.03 0.70 7.14 -51.93 -0.37 0.33 16 44 H 0.10 2.44 6.14 -51.93 -0.32 2.12 16 45 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 46 H 0.07 1.50 6.52 -51.93 -0.34 1.16 16 47 H 0.09 2.14 7.01 -51.93 -0.36 1.78 16 LS Contribution 372.48 15.07 5.61 5.61 Total: -1.00 -33.79 372.48 -8.70 -42.49 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -7.12 Total: 3.14 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: -1.64 Total: 3.45 kcal Atomic # 7 Polarization: -49.61 SS G_CDS: -0.34 Total: -49.95 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: -0.19 Total: -21.24 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.79 -8.70 -42.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074219755.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.752 kcal (2) G-P(sol) polarization free energy of solvation -33.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds