Wall clock time and date at job start Tue Mar 31 2020 18:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34514 * 125.78645 * 2 1 4 4 C 1.41382 * 106.84038 * 179.75474 * 3 2 1 5 5 C 1.34518 * 106.84031 * 0.36918 * 4 3 2 6 6 C 1.50692 * 125.78943 * 179.89599 * 5 4 3 7 7 C 1.50704 * 109.47690 * 89.71577 * 6 5 4 8 8 O 1.21282 * 119.99547 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00504 * 180.02562 * 7 6 5 10 10 C 1.46982 * 120.71814 * 359.97438 * 9 7 6 11 11 C 1.53164 * 108.61695 * 125.54478 * 10 9 7 12 12 C 1.52503 * 109.79267 * 54.41866 * 11 10 9 13 13 H 1.09002 * 108.93611 * 180.32578 * 12 11 10 14 14 O 1.42694 * 110.62563 * 60.62202 * 12 11 10 15 15 C 1.43079 * 113.86785 * 174.64225 * 14 12 11 16 16 C 1.53223 * 109.44986 * 61.64770 * 15 14 12 17 17 N 1.47177 * 108.70208 * 308.42281 * 16 15 14 18 18 C 1.36936 * 121.22923 * 230.96623 * 17 16 15 19 19 H 1.07991 * 120.00452 * 153.55627 * 18 17 16 20 20 C 1.38813 * 119.99505 * 333.55197 * 18 17 16 21 21 N 1.31618 * 120.00382 * 343.45461 * 20 18 17 22 22 Si 1.86797 * 119.99800 * 163.44949 * 20 18 17 23 23 H 1.48502 * 109.47096 * 60.00467 * 22 20 18 24 24 H 1.48502 * 109.47140 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47368 * 300.00210 * 22 20 18 26 26 C 1.47505 * 117.03101 * 51.36965 * 17 16 15 27 27 H 1.09004 * 109.76282 * 186.94148 * 26 17 16 28 28 C 1.46839 * 120.75108 * 179.70453 * 9 7 6 29 29 O 1.34303 * 125.79001 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.46747 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46955 * 299.99737 * 1 2 3 32 32 H 1.08994 * 109.47100 * 60.00253 * 1 2 3 33 33 H 1.07999 * 126.58150 * 359.95568 * 3 2 1 34 34 H 1.08002 * 126.58443 * 180.24057 * 4 3 2 35 35 H 1.09004 * 109.47613 * 329.71492 * 6 5 4 36 36 H 1.08997 * 109.47089 * 209.71581 * 6 5 4 37 37 H 1.08999 * 109.64339 * 5.75151 * 10 9 7 38 38 H 1.09003 * 109.63934 * 245.33241 * 10 9 7 39 39 H 1.08996 * 109.41517 * 174.51883 * 11 10 9 40 40 H 1.08994 * 109.41366 * 294.32002 * 11 10 9 41 41 H 1.09004 * 109.47311 * 181.63632 * 15 14 12 42 42 H 1.09001 * 109.47273 * 301.64905 * 15 14 12 43 43 H 1.08995 * 109.60312 * 68.18560 * 16 15 14 44 44 H 1.09001 * 109.60262 * 188.50533 * 16 15 14 45 45 H 0.97004 * 120.00347 * 179.97438 * 21 20 18 46 46 H 1.09002 * 109.34248 * 114.31116 * 28 9 7 47 47 H 1.09000 * 109.58783 * 354.25695 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6308 0.6322 0.0058 5 6 3.5814 -0.7121 0.0007 6 6 4.7706 -1.6377 0.0018 7 6 5.1662 -1.9459 1.4229 8 8 4.5439 -1.4613 2.3442 9 7 6.2120 -2.7593 1.6701 10 6 6.9775 -3.3548 0.5657 11 6 8.4577 -3.0099 0.7550 12 6 8.9165 -3.4469 2.1422 13 1 9.9688 -3.1899 2.2640 14 8 8.7629 -4.8566 2.3015 15 6 9.2852 -5.3601 3.5347 16 6 8.5338 -4.7196 4.7064 17 7 8.5460 -3.2582 4.5325 18 6 8.9446 -2.4261 5.5444 19 1 9.3545 -1.4539 5.3142 20 6 8.8218 -2.8324 6.8660 21 7 8.0426 -3.8479 7.1727 22 14 9.7625 -1.9381 8.2093 23 1 9.3538 -0.5106 8.2334 24 1 9.4622 -2.5616 9.5232 25 1 11.2198 -2.0313 7.9393 26 6 8.1022 -2.7347 3.2268 27 1 8.2736 -1.6591 3.1834 28 6 6.6156 -3.0656 3.0483 29 8 2.2925 -1.0894 0.0005 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.9665 2.1204 -0.0007 34 1 4.5212 1.2434 0.0110 35 1 5.6044 -1.1587 -0.5116 36 1 4.5111 -2.5633 -0.5120 37 1 6.6256 -2.9509 -0.3836 38 1 6.8497 -4.4373 0.5732 39 1 9.0495 -3.5253 -0.0015 40 1 8.5953 -1.9338 0.6501 41 1 9.1570 -6.4421 3.5688 42 1 10.3454 -5.1172 3.6064 43 1 7.5044 -5.0775 4.7201 44 1 9.0249 -4.9827 5.6433 45 1 7.9570 -4.1320 8.0962 46 1 6.4518 -4.1251 3.2455 47 1 6.0237 -2.4700 3.7434 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074219755.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:24 Heat of formation + Delta-G solvation = -54.132081 kcal Electronic energy + Delta-G solvation = -29868.817271 eV Core-core repulsion = 25825.442105 eV Total energy + Delta-G solvation = -4043.375166 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.53952 -41.49864 -40.03835 -37.15338 -36.44791 -34.23412 -34.03650 -33.40781 -33.04126 -31.39271 -30.57873 -29.18308 -26.74933 -25.67615 -25.37015 -24.34306 -22.93818 -22.74745 -21.46462 -20.75613 -19.68018 -18.92552 -18.39335 -17.68901 -17.12167 -17.03787 -16.94678 -16.66004 -16.52874 -16.17367 -15.73533 -15.56051 -15.03492 -14.88220 -14.76483 -14.42074 -14.22711 -13.92956 -13.80028 -13.74021 -13.66433 -13.54585 -13.36713 -13.09127 -12.99824 -12.82864 -12.66176 -12.50541 -12.41885 -12.22226 -12.15179 -11.86400 -11.68037 -11.21791 -10.96883 -10.78281 -10.75992 -10.52370 -9.71076 -9.19804 -8.72534 -7.94904 -5.43034 0.69987 1.42767 1.44112 1.51461 1.57514 1.60994 1.92628 2.14872 2.44955 2.90866 3.19563 3.45184 3.49920 3.67485 3.90447 3.99946 4.02739 4.13557 4.15377 4.21802 4.24770 4.28339 4.39377 4.45251 4.54634 4.56557 4.58170 4.65945 4.71654 4.82248 4.85968 4.87217 4.90089 4.93366 4.99765 5.06759 5.07651 5.23910 5.30033 5.32907 5.46532 5.55499 5.58280 5.65624 6.22510 6.24161 6.35956 6.45818 7.01492 7.14921 7.68997 8.24217 9.09587 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014174 B = 0.003157 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.001531 B = 8867.595342 C =10089.010476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.028 4.028 3 C -0.228 4.228 4 C -0.206 4.206 5 C -0.018 4.018 6 C -0.046 4.046 7 C 0.504 3.496 8 O -0.594 6.594 9 N -0.602 5.602 10 C 0.105 3.895 11 C -0.116 4.116 12 C 0.084 3.916 13 H 0.051 0.949 14 O -0.382 6.382 15 C 0.054 3.946 16 C 0.143 3.857 17 N -0.602 5.602 18 C -0.268 4.268 19 H 0.067 0.933 20 C -0.047 4.047 21 N -0.932 5.932 22 Si 0.971 3.029 23 H -0.280 1.280 24 H -0.293 1.293 25 H -0.272 1.272 26 C 0.131 3.869 27 H 0.061 0.939 28 C 0.126 3.874 29 O -0.194 6.194 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.109 0.891 33 H 0.167 0.833 34 H 0.159 0.841 35 H 0.165 0.835 36 H 0.140 0.860 37 H 0.132 0.868 38 H 0.077 0.923 39 H 0.115 0.885 40 H 0.095 0.905 41 H 0.108 0.892 42 H 0.046 0.954 43 H -0.001 1.001 44 H 0.066 0.934 45 H 0.252 0.748 46 H 0.048 0.952 47 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.290 3.255 -22.176 23.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.078 4.078 3 C -0.247 4.247 4 C -0.225 4.225 5 C -0.068 4.068 6 C -0.085 4.085 7 C 0.293 3.707 8 O -0.475 6.475 9 N -0.335 5.335 10 C -0.016 4.016 11 C -0.154 4.154 12 C 0.024 3.976 13 H 0.069 0.931 14 O -0.301 6.301 15 C -0.024 4.024 16 C 0.017 3.983 17 N -0.325 5.325 18 C -0.397 4.397 19 H 0.085 0.915 20 C -0.243 4.243 21 N -0.577 5.577 22 Si 0.799 3.201 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.198 1.198 26 C 0.023 3.977 27 H 0.079 0.921 28 C 0.000 4.000 29 O -0.092 6.092 30 H 0.096 0.904 31 H 0.112 0.888 32 H 0.127 0.873 33 H 0.184 0.816 34 H 0.177 0.823 35 H 0.183 0.817 36 H 0.158 0.842 37 H 0.150 0.850 38 H 0.096 0.904 39 H 0.133 0.867 40 H 0.113 0.887 41 H 0.126 0.874 42 H 0.065 0.935 43 H 0.017 0.983 44 H 0.084 0.916 45 H 0.061 0.939 46 H 0.067 0.933 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -5.805 3.019 -21.650 22.617 hybrid contribution 0.390 0.621 2.204 2.323 sum -5.414 3.640 -19.446 20.511 Atomic orbital electron populations 1.20471 0.82619 1.04650 1.05028 1.23213 0.95633 0.83832 1.05151 1.21868 0.92584 1.00439 1.09799 1.21849 0.99212 0.94000 1.07448 1.21958 0.82970 0.94731 1.07169 1.20284 0.93906 1.01402 0.92929 1.21278 0.79412 0.77710 0.92263 1.90726 1.54613 1.53583 1.48549 1.48305 1.30568 1.47082 1.07517 1.22086 0.90670 0.99538 0.89311 1.21873 0.96366 1.02981 0.94184 1.22330 0.97979 0.81596 0.95666 0.93131 1.87729 1.82462 1.21926 1.37970 1.23133 0.96594 0.98721 0.83977 1.21307 0.96459 0.83196 0.97340 1.44546 1.75251 1.01928 1.10816 1.19423 1.34200 1.00166 0.85946 0.91531 1.25843 0.99154 0.99772 0.99498 1.70173 1.38801 1.30757 1.17992 0.85293 0.78898 0.77951 0.77997 1.20556 1.21854 1.19762 1.21762 0.91469 0.97175 0.87259 0.92080 1.21678 0.96776 0.99019 0.82519 1.83914 1.16985 1.36320 1.71938 0.90425 0.88822 0.87286 0.81570 0.82319 0.81731 0.84207 0.85018 0.90426 0.86650 0.88664 0.87440 0.93519 0.98312 0.91591 0.93898 0.93344 0.94498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.07 10.42 71.24 0.74 -0.32 16 2 C -0.03 -0.69 7.32 24.83 0.18 -0.51 16 3 C -0.23 -5.45 10.81 22.19 0.24 -5.21 16 4 C -0.21 -5.28 10.81 22.19 0.24 -5.04 16 5 C -0.02 -0.49 5.81 24.83 0.14 -0.35 16 6 C -0.05 -0.94 4.58 29.10 0.13 -0.81 16 7 C 0.50 16.40 7.70 87.66 0.67 17.07 16 8 O -0.59 -26.86 15.45 -3.04 -0.05 -26.90 16 9 N -0.60 -18.76 2.97 -818.74 -2.43 -21.20 16 10 C 0.10 2.07 6.16 86.34 0.53 2.60 16 11 C -0.12 -2.34 5.83 30.48 0.18 -2.17 16 12 C 0.08 2.69 2.76 30.49 0.08 2.77 16 13 H 0.05 1.68 8.12 -2.39 -0.02 1.66 16 14 O -0.38 -13.03 9.51 -148.98 -1.42 -14.45 16 15 C 0.05 1.98 6.97 72.06 0.50 2.48 16 16 C 0.14 6.88 4.91 86.32 0.42 7.31 16 17 N -0.60 -30.55 2.73 -672.53 -1.84 -32.38 16 18 C -0.27 -14.98 9.72 84.03 0.82 -14.16 16 19 H 0.07 3.65 7.88 -2.92 -0.02 3.63 16 20 C -0.05 -2.64 4.96 84.86 0.42 -2.22 16 21 N -0.93 -55.88 11.14 21.65 0.24 -55.64 16 22 Si 0.97 45.55 29.58 68.60 2.03 47.58 16 23 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 24 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 25 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 26 C 0.13 5.49 3.01 44.98 0.14 5.63 16 27 H 0.06 2.66 7.99 -2.38 -0.02 2.64 16 28 C 0.13 5.36 5.61 86.43 0.48 5.84 16 29 O -0.19 -5.65 10.65 -2.53 -0.03 -5.68 16 30 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.17 3.04 8.06 -2.91 -0.02 3.02 16 34 H 0.16 3.44 8.06 -2.91 -0.02 3.42 16 35 H 0.17 1.87 7.71 -2.38 -0.02 1.85 16 36 H 0.14 1.98 7.93 -2.39 -0.02 1.96 16 37 H 0.13 1.27 5.95 -2.39 -0.01 1.26 16 38 H 0.08 1.62 7.94 -2.39 -0.02 1.60 16 39 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.09 1.67 8.14 -2.39 -0.02 1.66 16 41 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16 42 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.00 -0.06 7.14 -2.39 -0.02 -0.08 16 44 H 0.07 3.55 6.14 -2.39 -0.01 3.54 16 45 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 46 H 0.05 2.23 6.52 -2.39 -0.02 2.22 16 47 H 0.04 1.93 7.01 -2.39 -0.02 1.91 16 Total: -1.00 -81.75 372.48 3.42 -78.34 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: 0.97 Total: 17.43 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: 5.93 Total: 12.90 kcal Atomic # 7 Polarization: -105.19 SS G_CDS: -4.03 Total: -109.22 kcal Atomic # 8 Polarization: -45.54 SS G_CDS: -1.49 Total: -47.03 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -81.75 3.42 -78.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074219755.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.206 kcal (2) G-P(sol) polarization free energy of solvation -81.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds