Wall clock time and date at job start Tue Mar 31 2020 18:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34510 * 125.78774 * 2 1 4 4 C 1.41386 * 106.83659 * 180.02562 * 3 2 1 5 5 C 1.34508 * 106.84285 * 0.02562 * 4 3 2 6 6 C 1.50706 * 125.79012 * 180.02562 * 5 4 3 7 7 C 1.50701 * 109.47006 * 89.99389 * 6 5 4 8 8 O 1.21275 * 120.00357 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99705 * 179.97438 * 7 6 5 10 10 C 1.46995 * 120.72128 * 0.02562 * 9 7 6 11 11 C 1.53153 * 108.43552 * 234.57330 * 10 9 7 12 12 C 1.52504 * 109.79434 * 305.46105 * 11 10 9 13 13 H 1.09006 * 108.93397 * 179.01334 * 12 11 10 14 14 O 1.42687 * 110.61999 * 298.71347 * 12 11 10 15 15 C 1.43062 * 113.88365 * 185.33719 * 14 12 11 16 16 C 1.53235 * 109.45098 * 298.35816 * 15 14 12 17 17 N 1.47177 * 108.68858 * 51.58666 * 16 15 14 18 18 C 1.36937 * 121.22185 * 129.04330 * 17 16 15 19 19 H 1.07993 * 120.00102 * 206.16475 * 18 17 16 20 20 C 1.38809 * 119.99709 * 26.44816 * 18 17 16 21 21 N 1.31621 * 120.00392 * 16.52278 * 20 18 17 22 22 Si 1.86805 * 119.99607 * 196.52524 * 20 18 17 23 23 H 1.48495 * 109.47095 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47326 * 119.99803 * 22 20 18 25 25 H 1.48507 * 109.46820 * 239.99960 * 22 20 18 26 26 C 1.47593 * 117.55140 * 309.31830 * 17 16 15 27 27 H 1.08996 * 110.31655 * 172.03750 * 26 17 16 28 28 C 1.46785 * 120.72255 * 180.02562 * 9 7 6 29 29 O 1.34299 * 108.42111 * 0.26060 * 5 4 3 30 30 H 1.09001 * 109.47485 * 89.99655 * 1 2 3 31 31 H 1.09003 * 109.47393 * 209.99887 * 1 2 3 32 32 H 1.09006 * 109.46974 * 329.99739 * 1 2 3 33 33 H 1.07995 * 126.58137 * 0.02562 * 3 2 1 34 34 H 1.08000 * 126.57303 * 180.02562 * 4 3 2 35 35 H 1.09001 * 109.46718 * 329.99460 * 6 5 4 36 36 H 1.08997 * 109.46971 * 209.99611 * 6 5 4 37 37 H 1.08998 * 109.64009 * 114.89117 * 10 9 7 38 38 H 1.09004 * 109.64085 * 354.25745 * 10 9 7 39 39 H 1.09001 * 109.41433 * 185.36324 * 11 10 9 40 40 H 1.09003 * 109.41843 * 65.56535 * 11 10 9 41 41 H 1.08998 * 109.47878 * 178.36254 * 15 14 12 42 42 H 1.09001 * 109.48140 * 58.35215 * 15 14 12 43 43 H 1.09004 * 109.59565 * 291.82916 * 16 15 14 44 44 H 1.09000 * 109.73436 * 171.43005 * 16 15 14 45 45 H 0.97005 * 119.99740 * 180.02562 * 21 20 18 46 46 H 1.09003 * 109.51529 * 245.59931 * 28 9 7 47 47 H 1.09000 * 109.52138 * 5.77558 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6308 0.6320 -0.0006 5 6 3.5813 -0.7122 -0.0015 6 6 4.7705 -1.6379 -0.0019 7 6 5.1667 -1.9473 1.4189 8 8 4.5444 -1.4642 2.3409 9 7 6.2120 -2.7618 1.6648 10 6 6.9769 -3.3565 0.5594 11 6 7.0007 -4.8760 0.7493 12 6 7.5374 -5.2148 2.1360 13 1 7.5319 -6.2975 2.2626 14 8 8.8736 -4.7379 2.2879 15 6 9.4895 -5.1231 3.5205 16 6 8.6968 -4.5351 4.6926 17 7 7.2775 -4.8871 4.5259 18 6 6.5647 -5.4629 5.5436 19 1 5.7106 -6.0848 5.3201 20 6 6.9366 -5.2423 6.8626 21 7 7.7449 -4.2473 7.1610 22 14 6.2898 -6.3578 8.2143 23 1 5.4050 -7.3924 7.6211 24 1 7.4301 -7.0157 8.9012 25 1 5.5194 -5.5515 9.1951 26 6 6.6524 -4.6025 3.2196 27 1 5.6520 -5.0331 3.1768 28 6 6.6112 -3.0744 3.0423 29 8 2.2924 -1.0894 -0.0073 30 1 -0.3634 0.0001 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.9665 2.1204 0.0004 34 1 4.5211 1.2433 -0.0004 35 1 5.6040 -1.1585 -0.5153 36 1 4.5106 -2.5631 -0.5163 37 1 7.9960 -2.9700 0.5695 38 1 6.4988 -3.1133 -0.3895 39 1 7.6432 -5.3258 -0.0078 40 1 5.9897 -5.2701 0.6457 41 1 10.5123 -4.7475 3.5487 42 1 9.4994 -6.2104 3.5976 43 1 8.8061 -3.4505 4.7003 44 1 9.0679 -4.9467 5.6312 45 1 8.0049 -4.0935 8.0828 46 1 7.5996 -2.6584 3.2382 47 1 5.8899 -2.6442 3.7371 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074219758.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:38 Heat of formation + Delta-G solvation = -31.390666 kcal Electronic energy + Delta-G solvation = -29885.129909 eV Core-core repulsion = 25842.740884 eV Total energy + Delta-G solvation = -4042.389025 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.57688 -40.10054 -38.56991 -35.75806 -34.66093 -33.18745 -33.08068 -31.81033 -31.50562 -30.19679 -29.30202 -27.40731 -25.56664 -24.37726 -23.76317 -22.77806 -21.78890 -21.50075 -20.35417 -19.41056 -18.28457 -17.26840 -16.90259 -16.62494 -15.95066 -15.60092 -15.42327 -15.27027 -15.08939 -14.52529 -14.43315 -14.16465 -13.84893 -13.50461 -13.36235 -13.17753 -13.03949 -12.80084 -12.77445 -12.68107 -12.41751 -12.29622 -12.13229 -11.96912 -11.64257 -11.37079 -11.08178 -10.96565 -10.79493 -10.61748 -10.24391 -10.19379 -10.01050 -9.84573 -9.65800 -9.55714 -9.02152 -8.61601 -8.25535 -8.24905 -6.77439 -5.87328 -3.31069 1.68518 2.59235 2.79659 2.88339 3.32086 3.36379 3.41758 3.43890 4.29536 4.40072 4.47591 4.67630 4.80654 4.95263 5.01277 5.02916 5.11813 5.19254 5.27817 5.28350 5.32732 5.34048 5.41856 5.54414 5.62311 5.73292 5.74705 5.82141 5.96210 5.98673 6.02715 6.06603 6.13140 6.15439 6.27836 6.33920 6.41746 6.54737 6.65650 6.74001 6.93845 7.07228 7.18332 7.46950 7.70135 7.71452 7.86531 8.28694 8.43904 9.07577 9.69094 10.26126 11.20361 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013587 B = 0.003235 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.228004 B = 8652.102182 C = 9992.508233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.016 4.016 3 C -0.211 4.211 4 C -0.196 4.196 5 C 0.010 3.990 6 C -0.060 4.060 7 C 0.509 3.491 8 O -0.531 6.531 9 N -0.606 5.606 10 C 0.111 3.889 11 C -0.123 4.123 12 C 0.081 3.919 13 H 0.052 0.948 14 O -0.387 6.387 15 C 0.040 3.960 16 C 0.137 3.863 17 N -0.585 5.585 18 C -0.255 4.255 19 H 0.069 0.931 20 C 0.005 3.995 21 N -0.900 5.900 22 Si 0.906 3.094 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.289 1.289 26 C 0.134 3.866 27 H 0.074 0.926 28 C 0.107 3.893 29 O -0.170 6.170 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.146 0.854 34 H 0.146 0.854 35 H 0.121 0.879 36 H 0.109 0.891 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.041 0.959 43 H 0.029 0.971 44 H 0.096 0.904 45 H 0.255 0.745 46 H 0.069 0.931 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.591 4.754 -18.648 19.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.066 4.066 3 C -0.230 4.230 4 C -0.215 4.215 5 C -0.041 4.041 6 C -0.100 4.100 7 C 0.296 3.704 8 O -0.407 6.407 9 N -0.340 5.340 10 C -0.013 4.013 11 C -0.162 4.162 12 C 0.021 3.979 13 H 0.070 0.930 14 O -0.306 6.306 15 C -0.038 4.038 16 C 0.011 3.989 17 N -0.307 5.307 18 C -0.384 4.384 19 H 0.087 0.913 20 C -0.194 4.194 21 N -0.543 5.543 22 Si 0.735 3.265 23 H -0.202 1.202 24 H -0.215 1.215 25 H -0.216 1.216 26 C 0.025 3.975 27 H 0.093 0.907 28 C -0.017 4.017 29 O -0.067 6.067 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.105 0.895 33 H 0.163 0.837 34 H 0.163 0.837 35 H 0.139 0.861 36 H 0.127 0.873 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.099 0.901 42 H 0.059 0.941 43 H 0.047 0.953 44 H 0.114 0.886 45 H 0.065 0.935 46 H 0.087 0.913 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.876 4.852 -18.058 19.324 hybrid contribution -0.162 -0.446 1.104 1.202 sum -5.038 4.406 -16.954 18.227 Atomic orbital electron populations 1.20279 0.85290 1.04099 1.03172 1.22370 0.93909 0.84193 1.06120 1.21499 0.92699 0.99225 1.09622 1.21466 0.98198 0.93683 1.08126 1.21484 0.82598 0.93886 1.06123 1.20167 0.93346 0.99770 0.96712 1.20293 0.80337 0.79260 0.90525 1.90749 1.52525 1.51414 1.45997 1.48292 1.30411 1.46775 1.08504 1.21692 0.97106 0.93489 0.88963 1.21796 1.01502 0.96012 0.96859 1.22117 0.84045 0.97493 0.94239 0.93034 1.87707 1.26784 1.77162 1.38979 1.23325 0.96300 0.98609 0.85588 1.21477 0.83509 0.97443 0.96437 1.44308 1.06036 1.71086 1.09279 1.19219 1.12114 1.22243 0.84853 0.91283 1.25062 0.99899 0.96996 0.97433 1.70031 1.38188 1.28047 1.18078 0.86171 0.78205 0.80185 0.81910 1.20197 1.21473 1.21577 1.21645 0.96063 0.92343 0.87442 0.90742 1.22449 1.00978 0.98018 0.80221 1.83920 1.16238 1.35101 1.71459 0.90330 0.90549 0.89453 0.83668 0.83668 0.86124 0.87288 0.90368 0.90361 0.90307 0.90419 0.90109 0.94098 0.95334 0.88581 0.93487 0.91271 0.89310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.60 10.42 36.01 0.38 -0.22 16 2 C -0.02 -0.20 7.32 -35.63 -0.26 -0.46 16 3 C -0.21 -2.63 10.81 -39.70 -0.43 -3.06 16 4 C -0.20 -2.61 10.81 -39.70 -0.43 -3.04 16 5 C 0.01 0.13 5.81 -35.62 -0.21 -0.07 16 6 C -0.06 -0.70 4.58 -29.03 -0.13 -0.84 16 7 C 0.51 8.45 7.69 -10.98 -0.08 8.37 16 8 O -0.53 -11.50 15.45 5.56 0.09 -11.41 16 9 N -0.61 -9.74 2.96 -172.42 -0.51 -10.25 16 10 C 0.11 1.32 6.18 -3.69 -0.02 1.30 16 11 C -0.12 -1.54 5.82 -26.91 -0.16 -1.70 16 12 C 0.08 1.38 2.71 -27.13 -0.07 1.30 16 13 H 0.05 0.92 8.12 -51.93 -0.42 0.50 16 14 O -0.39 -6.97 9.59 -35.23 -0.34 -7.31 16 15 C 0.04 0.74 6.97 37.28 0.26 1.00 16 16 C 0.14 3.16 4.94 -3.55 -0.02 3.14 16 17 N -0.58 -14.26 2.71 -163.79 -0.44 -14.71 16 18 C -0.26 -6.89 9.69 -15.06 -0.15 -7.04 16 19 H 0.07 1.85 7.88 -52.49 -0.41 1.44 16 20 C 0.01 0.14 4.96 -17.43 -0.09 0.06 16 21 N -0.90 -25.66 11.13 55.49 0.62 -25.04 16 22 Si 0.91 21.57 29.59 -169.99 -5.03 16.54 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 C 0.13 2.76 3.03 -67.01 -0.20 2.55 16 27 H 0.07 1.59 7.99 -51.93 -0.42 1.18 16 28 C 0.11 2.18 5.64 -3.42 -0.02 2.16 16 29 O -0.17 -2.55 10.65 5.71 0.06 -2.48 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.15 1.42 8.06 -52.49 -0.42 1.00 16 34 H 0.15 1.67 8.06 -52.49 -0.42 1.24 16 35 H 0.12 1.02 7.93 -51.93 -0.41 0.60 16 36 H 0.11 1.02 7.71 -51.93 -0.40 0.62 16 37 H 0.08 0.96 7.94 -51.93 -0.41 0.55 16 38 H 0.08 0.64 5.95 -51.93 -0.31 0.33 16 39 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 42 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.03 0.71 7.17 -51.93 -0.37 0.33 16 44 H 0.10 2.46 6.12 -51.93 -0.32 2.14 16 45 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 46 H 0.07 1.50 6.56 -51.93 -0.34 1.16 16 47 H 0.09 2.14 7.00 -51.93 -0.36 1.78 16 LS Contribution 372.59 15.07 5.61 5.61 Total: -1.00 -33.84 372.59 -8.69 -42.53 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -7.12 Total: 3.05 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: -1.63 Total: 3.45 kcal Atomic # 7 Polarization: -49.66 SS G_CDS: -0.34 Total: -50.00 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: -0.19 Total: -21.20 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.54 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.84 -8.69 -42.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074219758.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.143 kcal (2) G-P(sol) polarization free energy of solvation -33.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds