Wall clock time and date at job start Tue Mar 31 2020 19:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34177 * 125.43741 * 2 1 4 4 C 1.47017 * 105.95567 * 179.97438 * 3 2 1 5 5 C 1.47384 * 127.19202 * 179.97438 * 4 3 2 6 6 O 1.21612 * 119.99914 * 27.07859 * 5 4 3 7 7 N 1.34778 * 119.99968 * 207.07125 * 5 4 3 8 8 C 1.46927 * 120.63120 * 179.31233 * 7 5 4 9 9 C 1.53183 * 108.77677 * 233.58830 * 8 7 5 10 10 C 1.53035 * 109.31682 * 305.36732 * 9 8 7 11 11 O 1.42907 * 109.46378 * 181.38527 * 10 9 8 12 12 C 1.42897 * 114.00158 * 149.97086 * 11 10 9 13 13 C 1.53943 * 113.74460 * 248.74161 * 12 11 10 14 14 N 1.47808 * 86.03565 * 222.08663 * 13 12 11 15 15 C 1.36938 * 134.45213 * 204.64166 * 14 13 12 16 16 H 1.08002 * 119.99599 * 172.12862 * 15 14 13 17 17 C 1.38810 * 120.00211 * 352.13532 * 15 14 13 18 18 N 1.31620 * 120.00382 * 5.10573 * 17 15 14 19 19 Si 1.86803 * 120.00044 * 185.10850 * 17 15 14 20 20 H 1.48505 * 109.47019 * 94.97356 * 19 17 15 21 21 H 1.48495 * 109.47265 * 214.97594 * 19 17 15 22 22 H 1.48502 * 109.46884 * 334.97727 * 19 17 15 23 23 C 1.47580 * 91.05411 * 24.55075 * 14 13 12 24 24 C 1.53041 * 109.52687 * 61.37066 * 10 9 8 25 25 C 1.46931 * 120.62941 * 359.29850 * 7 5 4 26 26 C 1.36415 * 105.61403 * 0.22220 * 4 3 2 27 27 O 1.33648 * 108.39550 * 359.63479 * 26 4 3 28 28 H 1.09003 * 109.46509 * 90.00210 * 1 2 3 29 29 H 1.08998 * 109.47111 * 209.99760 * 1 2 3 30 30 H 1.09002 * 109.47572 * 330.00373 * 1 2 3 31 31 H 1.08006 * 127.02124 * 359.97438 * 3 2 1 32 32 H 1.09003 * 109.58163 * 113.80138 * 8 7 5 33 33 H 1.08995 * 109.70152 * 353.45142 * 8 7 5 34 34 H 1.09004 * 109.49645 * 185.41297 * 9 8 7 35 35 H 1.09001 * 109.49910 * 65.31808 * 9 8 7 36 36 H 1.08997 * 109.46024 * 301.35613 * 10 9 8 37 37 H 1.09005 * 112.94097 * 20.33740 * 12 11 10 38 38 H 1.09007 * 113.76587 * 336.35220 * 13 12 11 39 39 H 1.09001 * 113.76569 * 107.74625 * 13 12 11 40 40 H 0.96998 * 120.00372 * 180.02562 * 18 17 15 41 41 H 1.08999 * 113.76545 * 221.15410 * 23 14 13 42 42 H 1.08992 * 113.76804 * 89.75451 * 23 14 13 43 43 H 1.09002 * 109.49521 * 58.58336 * 24 10 9 44 44 H 1.09000 * 109.50073 * 178.67704 * 24 10 9 45 45 H 1.09003 * 109.58543 * 246.19644 * 25 7 5 46 46 H 1.08998 * 109.58579 * 6.48132 * 25 7 5 47 47 H 1.08003 * 125.79666 * 179.74975 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0932 0.0000 4 6 3.6710 0.6029 0.0006 5 6 4.9024 1.4126 0.0003 6 8 4.8952 2.5306 0.4790 7 7 6.0366 0.9141 -0.5303 8 6 7.2683 1.7149 -0.5515 9 6 7.7979 1.7669 -1.9879 10 6 7.9662 0.3410 -2.5173 11 8 8.4908 0.3851 -3.8459 12 6 9.2969 -0.7433 -4.1903 13 6 10.7897 -0.4091 -4.3631 14 7 10.7461 -1.2959 -5.5448 15 6 11.6780 -2.0329 -6.2257 16 1 11.3649 -2.7133 -7.0038 17 6 13.0250 -1.9056 -5.9157 18 7 13.3990 -1.1539 -4.9020 19 14 14.3073 -2.8012 -6.9372 20 1 14.8266 -1.8904 -7.9889 21 1 15.4251 -3.2333 -6.0604 22 1 13.6892 -3.9916 -7.5744 23 6 9.2954 -1.0700 -5.6948 24 6 6.6080 -0.3641 -2.5286 25 6 6.0649 -0.4407 -1.0983 26 6 3.5789 -0.7581 -0.0041 27 8 2.2852 -1.0934 0.0007 28 1 -0.3632 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.9594 2.1230 -0.0004 32 1 8.0143 1.2549 0.0967 33 1 7.0554 2.7256 -0.2036 34 1 8.7615 2.2764 -2.0021 35 1 7.0908 2.3075 -2.6170 36 1 8.6543 -0.2067 -1.8733 37 1 9.1117 -1.6082 -3.5532 38 1 10.9806 0.6365 -4.6052 39 1 11.4197 -0.7820 -3.5555 40 1 14.3403 -1.0647 -4.6856 41 1 8.7347 -1.9696 -5.9484 42 1 9.0465 -0.2192 -6.3288 43 1 5.9121 0.1967 -3.1526 44 1 6.7244 -1.3717 -2.9278 45 1 6.7129 -1.0765 -0.4948 46 1 5.0561 -0.8532 -1.1098 47 1 4.4103 -1.4475 -0.0089 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093529806.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:04 Heat of formation + Delta-G solvation = 8.989555 kcal Electronic energy + Delta-G solvation = -28542.908859 eV Core-core repulsion = 24502.270853 eV Total energy + Delta-G solvation = -4040.638007 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.99563 -40.28034 -38.70819 -37.32787 -35.50458 -33.56932 -33.02488 -32.13277 -31.33840 -31.07881 -27.50982 -27.19532 -25.70140 -24.79750 -23.69417 -23.30276 -22.54803 -21.38854 -20.72860 -19.67603 -19.28709 -17.49319 -17.15372 -16.81159 -16.63456 -16.29576 -16.17436 -15.35690 -15.03359 -14.72140 -14.55630 -14.36401 -13.83820 -13.77850 -13.66998 -13.49246 -13.45150 -13.37501 -13.05219 -12.79977 -12.43680 -12.27371 -11.99541 -11.86284 -11.72968 -11.43219 -11.21762 -11.16035 -10.89523 -10.70307 -10.50099 -10.32926 -10.24575 -10.01428 -9.99386 -9.55722 -8.97902 -8.90531 -8.80842 -8.73563 -6.90539 -5.81746 -3.13691 1.01232 1.69547 2.38958 2.65599 2.99684 3.37391 3.42183 3.44526 3.93009 4.08115 4.21059 4.44573 4.46460 4.49356 4.72238 4.79745 4.88319 4.96656 5.01191 5.05957 5.10975 5.18152 5.21539 5.31143 5.33951 5.37163 5.39078 5.48605 5.55730 5.56440 5.66397 5.68750 5.77215 5.86891 5.96851 6.04902 6.18073 6.31580 6.39105 6.61114 6.62758 6.65093 7.08803 7.10317 7.20455 7.50541 7.85364 7.92187 7.94513 9.00790 9.66733 10.56658 11.36271 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.025332 B = 0.002068 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.045130 B =13534.441851 C =14202.944740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.012 4.012 3 C -0.166 4.166 4 C -0.224 4.224 5 C 0.588 3.412 6 O -0.537 6.537 7 N -0.606 5.606 8 C 0.116 3.884 9 C -0.131 4.131 10 C 0.091 3.909 11 O -0.372 6.372 12 C 0.033 3.967 13 C 0.153 3.847 14 N -0.609 5.609 15 C -0.224 4.224 16 H 0.082 0.918 17 C -0.007 4.007 18 N -0.918 5.918 19 Si 0.912 3.088 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.279 1.279 23 C 0.121 3.879 24 C -0.156 4.156 25 C 0.082 3.918 26 C 0.002 3.998 27 O -0.173 6.173 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.158 0.842 32 H 0.073 0.927 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.062 0.938 37 H 0.079 0.921 38 H 0.036 0.964 39 H 0.067 0.933 40 H 0.255 0.745 41 H 0.045 0.955 42 H 0.042 0.958 43 H 0.075 0.925 44 H 0.081 0.919 45 H 0.077 0.923 46 H 0.101 0.899 47 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.049 1.238 12.716 27.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.061 4.061 3 C -0.185 4.185 4 C -0.229 4.229 5 C 0.378 3.622 6 O -0.415 6.415 7 N -0.339 5.339 8 C -0.006 4.006 9 C -0.169 4.169 10 C 0.033 3.967 11 O -0.290 6.290 12 C -0.025 4.025 13 C 0.027 3.973 14 N -0.337 5.337 15 C -0.351 4.351 16 H 0.100 0.900 17 C -0.204 4.204 18 N -0.565 5.565 19 Si 0.742 3.258 20 H -0.215 1.215 21 H -0.217 1.217 22 H -0.205 1.205 23 C -0.005 4.005 24 C -0.195 4.195 25 C -0.040 4.040 26 C -0.067 4.067 27 O -0.069 6.069 28 H 0.102 0.898 29 H 0.097 0.903 30 H 0.109 0.891 31 H 0.176 0.824 32 H 0.091 0.909 33 H 0.116 0.884 34 H 0.105 0.895 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.097 0.903 38 H 0.054 0.946 39 H 0.085 0.915 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.094 0.906 44 H 0.099 0.901 45 H 0.095 0.905 46 H 0.118 0.882 47 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -23.882 1.598 12.779 27.134 hybrid contribution 1.150 -0.487 -0.584 1.378 sum -22.733 1.111 12.196 25.821 Atomic orbital electron populations 1.20352 0.84581 1.04314 1.03849 1.22355 0.94225 0.83637 1.05861 1.22466 0.89763 0.99756 1.06527 1.21462 0.94712 0.93428 1.13292 1.17317 0.81797 0.85496 0.77640 1.90780 1.84741 1.19636 1.46360 1.47991 1.10303 1.16409 1.59191 1.21651 0.84651 0.97466 0.96802 1.21988 1.02812 0.96932 0.95216 1.21958 0.93227 0.95784 0.85751 1.87971 1.67583 1.44421 1.29000 1.25051 0.92905 0.87679 0.96871 1.22677 0.90038 0.94019 0.90542 1.45682 1.03206 1.52248 1.32595 1.18987 0.85781 1.15921 1.14409 0.90046 1.24866 0.96816 0.99926 0.98766 1.69842 1.15429 1.42632 1.28548 0.86106 0.81354 0.78877 0.79482 1.21528 1.21665 1.20484 1.22724 0.87330 0.97612 0.92876 1.22464 0.98702 1.02490 0.95805 1.22465 1.03233 0.83474 0.94868 1.25033 0.84131 0.95641 1.01862 1.83762 1.16492 1.35527 1.71089 0.89813 0.90299 0.89109 0.82414 0.90901 0.88361 0.89457 0.90773 0.91959 0.90260 0.94584 0.91519 0.93549 0.93690 0.94032 0.90600 0.90063 0.90488 0.88161 0.75957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.32 10.40 36.00 0.37 0.06 16 2 C -0.01 -0.10 7.28 -35.74 -0.26 -0.36 16 3 C -0.17 -1.61 10.99 -37.46 -0.41 -2.02 16 4 C -0.22 -2.38 5.93 -103.28 -0.61 -2.99 16 5 C 0.59 7.42 7.68 -12.54 -0.10 7.32 16 6 O -0.54 -8.60 16.48 5.27 0.09 -8.51 16 7 N -0.61 -6.48 2.97 -174.05 -0.52 -6.99 16 8 C 0.12 1.24 6.43 -3.72 -0.02 1.22 16 9 C -0.13 -1.55 5.73 -26.62 -0.15 -1.70 16 10 C 0.09 1.18 2.45 -26.69 -0.07 1.11 16 11 O -0.37 -6.31 10.01 -35.23 -0.35 -6.66 16 12 C 0.03 0.63 4.30 -25.81 -0.11 0.52 16 13 C 0.15 3.66 7.24 -2.84 -0.02 3.64 16 14 N -0.61 -15.89 3.70 -178.00 -0.66 -16.55 16 15 C -0.22 -6.32 10.69 -15.06 -0.16 -6.48 16 16 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 17 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 18 N -0.92 -27.33 11.55 55.49 0.64 -26.69 16 19 Si 0.91 22.07 29.56 -169.99 -5.02 17.05 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 C 0.12 2.54 8.77 -2.97 -0.03 2.52 16 24 C -0.16 -1.63 5.69 -26.61 -0.15 -1.78 16 25 C 0.08 0.68 5.50 -3.71 -0.02 0.66 16 26 C 0.00 0.02 9.87 30.08 0.30 0.32 16 27 O -0.17 -1.48 10.52 7.68 0.08 -1.40 16 28 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.16 1.41 8.06 -52.48 -0.42 0.98 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.10 1.14 7.01 -51.93 -0.36 0.77 16 34 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.06 0.79 7.74 -51.93 -0.40 0.39 16 37 H 0.08 1.39 7.80 -51.93 -0.41 0.99 16 38 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.07 1.72 7.42 -51.93 -0.39 1.33 16 40 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 41 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 44 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.10 0.67 3.32 -51.93 -0.17 0.50 16 47 H 0.22 1.05 5.78 -52.48 -0.30 0.75 16 LS Contribution 381.56 15.07 5.75 5.75 Total: -1.00 -35.29 381.56 -8.61 -43.90 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -7.07 Total: -1.64 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: -1.54 Total: 1.75 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: -0.53 Total: -50.24 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -0.19 Total: -16.58 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.29 -8.61 -43.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093529806.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.887 kcal (2) G-P(sol) polarization free energy of solvation -35.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds