Wall clock time and date at job start Tue Mar 31 2020 19:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34177 * 125.43741 * 2 1 4 4 C 1.47017 * 105.95567 * 179.97438 * 3 2 1 5 5 C 1.47384 * 127.19202 * 179.97438 * 4 3 2 6 6 O 1.21612 * 119.99914 * 27.07859 * 5 4 3 7 7 N 1.34778 * 119.99968 * 207.07125 * 5 4 3 8 8 C 1.46927 * 120.63120 * 179.31233 * 7 5 4 9 9 C 1.53183 * 108.77677 * 233.58830 * 8 7 5 10 10 C 1.53035 * 109.31682 * 305.36732 * 9 8 7 11 11 O 1.42907 * 109.46378 * 181.38527 * 10 9 8 12 12 C 1.42897 * 114.00158 * 149.97086 * 11 10 9 13 13 C 1.53943 * 113.74460 * 248.74161 * 12 11 10 14 14 N 1.47808 * 86.03565 * 222.08663 * 13 12 11 15 15 C 1.36938 * 134.45213 * 204.64166 * 14 13 12 16 16 H 1.08002 * 119.99599 * 172.12862 * 15 14 13 17 17 C 1.38810 * 120.00211 * 352.13532 * 15 14 13 18 18 N 1.31620 * 120.00382 * 5.10573 * 17 15 14 19 19 Si 1.86803 * 120.00044 * 185.10850 * 17 15 14 20 20 H 1.48505 * 109.47019 * 94.97356 * 19 17 15 21 21 H 1.48495 * 109.47265 * 214.97594 * 19 17 15 22 22 H 1.48502 * 109.46884 * 334.97727 * 19 17 15 23 23 C 1.47580 * 91.05411 * 24.55075 * 14 13 12 24 24 C 1.53041 * 109.52687 * 61.37066 * 10 9 8 25 25 C 1.46931 * 120.62941 * 359.29850 * 7 5 4 26 26 C 1.36415 * 105.61403 * 0.22220 * 4 3 2 27 27 O 1.33648 * 108.39550 * 359.63479 * 26 4 3 28 28 H 1.09003 * 109.46509 * 90.00210 * 1 2 3 29 29 H 1.08998 * 109.47111 * 209.99760 * 1 2 3 30 30 H 1.09002 * 109.47572 * 330.00373 * 1 2 3 31 31 H 1.08006 * 127.02124 * 359.97438 * 3 2 1 32 32 H 1.09003 * 109.58163 * 113.80138 * 8 7 5 33 33 H 1.08995 * 109.70152 * 353.45142 * 8 7 5 34 34 H 1.09004 * 109.49645 * 185.41297 * 9 8 7 35 35 H 1.09001 * 109.49910 * 65.31808 * 9 8 7 36 36 H 1.08997 * 109.46024 * 301.35613 * 10 9 8 37 37 H 1.09005 * 112.94097 * 20.33740 * 12 11 10 38 38 H 1.09007 * 113.76587 * 336.35220 * 13 12 11 39 39 H 1.09001 * 113.76569 * 107.74625 * 13 12 11 40 40 H 0.96998 * 120.00372 * 180.02562 * 18 17 15 41 41 H 1.08999 * 113.76545 * 221.15410 * 23 14 13 42 42 H 1.08992 * 113.76804 * 89.75451 * 23 14 13 43 43 H 1.09002 * 109.49521 * 58.58336 * 24 10 9 44 44 H 1.09000 * 109.50073 * 178.67704 * 24 10 9 45 45 H 1.09003 * 109.58543 * 246.19644 * 25 7 5 46 46 H 1.08998 * 109.58579 * 6.48132 * 25 7 5 47 47 H 1.08003 * 125.79666 * 179.74975 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0932 0.0000 4 6 3.6710 0.6029 0.0006 5 6 4.9024 1.4126 0.0003 6 8 4.8952 2.5306 0.4790 7 7 6.0366 0.9141 -0.5303 8 6 7.2683 1.7149 -0.5515 9 6 7.7979 1.7669 -1.9879 10 6 7.9662 0.3410 -2.5173 11 8 8.4908 0.3851 -3.8459 12 6 9.2969 -0.7433 -4.1903 13 6 10.7897 -0.4091 -4.3631 14 7 10.7461 -1.2959 -5.5448 15 6 11.6780 -2.0329 -6.2257 16 1 11.3649 -2.7133 -7.0038 17 6 13.0250 -1.9056 -5.9157 18 7 13.3990 -1.1539 -4.9020 19 14 14.3073 -2.8012 -6.9372 20 1 14.8266 -1.8904 -7.9889 21 1 15.4251 -3.2333 -6.0604 22 1 13.6892 -3.9916 -7.5744 23 6 9.2954 -1.0700 -5.6948 24 6 6.6080 -0.3641 -2.5286 25 6 6.0649 -0.4407 -1.0983 26 6 3.5789 -0.7581 -0.0041 27 8 2.2852 -1.0934 0.0007 28 1 -0.3632 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.9594 2.1230 -0.0004 32 1 8.0143 1.2549 0.0967 33 1 7.0554 2.7256 -0.2036 34 1 8.7615 2.2764 -2.0021 35 1 7.0908 2.3075 -2.6170 36 1 8.6543 -0.2067 -1.8733 37 1 9.1117 -1.6082 -3.5532 38 1 10.9806 0.6365 -4.6052 39 1 11.4197 -0.7820 -3.5555 40 1 14.3403 -1.0647 -4.6856 41 1 8.7347 -1.9696 -5.9484 42 1 9.0465 -0.2192 -6.3288 43 1 5.9121 0.1967 -3.1526 44 1 6.7244 -1.3717 -2.9278 45 1 6.7129 -1.0765 -0.4948 46 1 5.0561 -0.8532 -1.1098 47 1 4.4103 -1.4475 -0.0089 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093529806.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:03 Heat of formation + Delta-G solvation = -13.841880 kcal Electronic energy + Delta-G solvation = -28543.898905 eV Core-core repulsion = 24502.270853 eV Total energy + Delta-G solvation = -4041.628052 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.64666 -41.21464 -40.15438 -38.60257 -36.82960 -34.38950 -34.09980 -33.59600 -32.39142 -31.85080 -29.44283 -27.73800 -26.71452 -26.55686 -24.93261 -24.49687 -23.66608 -22.11679 -21.59447 -21.16162 -20.32659 -18.79547 -18.23927 -18.08256 -17.57718 -17.27975 -17.02450 -16.94173 -16.25094 -15.94458 -15.69982 -15.43607 -15.35969 -14.79232 -14.59491 -14.46512 -14.24812 -14.01925 -13.89460 -13.77522 -13.62477 -13.40997 -13.22641 -13.10977 -12.89110 -12.82281 -12.77994 -12.60256 -12.28106 -12.24455 -11.94101 -11.80067 -11.44498 -11.41988 -11.19354 -10.88467 -10.81061 -10.21980 -9.83687 -9.52170 -8.96556 -7.95224 -5.29224 0.31770 1.01350 1.45276 1.47962 1.56795 1.69875 1.94258 2.14401 2.41829 2.73415 3.24761 3.37430 3.46050 3.61177 3.66653 3.79904 3.86587 3.89390 4.01537 4.12363 4.16328 4.27889 4.30565 4.38983 4.45014 4.55267 4.56888 4.71565 4.74170 4.74857 4.77487 4.81730 4.85334 4.87627 4.93993 4.96982 5.08339 5.14686 5.19670 5.22274 5.35577 5.38532 5.44380 5.48546 5.87157 5.99520 6.25213 6.47009 6.87750 7.01381 7.56301 8.52236 9.22904 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.025332 B = 0.002068 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.045130 B =13534.441851 C =14202.944740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.004 4.004 3 C -0.196 4.196 4 C -0.258 4.258 5 C 0.585 3.415 6 O -0.585 6.585 7 N -0.603 5.603 8 C 0.120 3.880 9 C -0.125 4.125 10 C 0.082 3.918 11 O -0.384 6.384 12 C 0.073 3.927 13 C 0.147 3.853 14 N -0.638 5.638 15 C -0.237 4.237 16 H 0.089 0.911 17 C -0.068 4.068 18 N -0.953 5.953 19 Si 0.981 3.019 20 H -0.290 1.290 21 H -0.293 1.293 22 H -0.262 1.262 23 C 0.119 3.881 24 C -0.149 4.149 25 C 0.083 3.917 26 C 0.024 3.976 27 O -0.175 6.175 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.102 0.898 31 H 0.154 0.846 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.104 0.896 38 H 0.010 0.990 39 H 0.041 0.959 40 H 0.250 0.750 41 H 0.070 0.930 42 H 0.040 0.960 43 H 0.064 0.936 44 H 0.096 0.904 45 H 0.105 0.895 46 H 0.120 0.880 47 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.756 -1.283 12.820 28.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.053 4.053 3 C -0.215 4.215 4 C -0.262 4.262 5 C 0.376 3.624 6 O -0.466 6.466 7 N -0.335 5.335 8 C -0.002 4.002 9 C -0.163 4.163 10 C 0.025 3.975 11 O -0.302 6.302 12 C 0.014 3.986 13 C 0.021 3.979 14 N -0.367 5.367 15 C -0.365 4.365 16 H 0.107 0.893 17 C -0.261 4.261 18 N -0.601 5.601 19 Si 0.809 3.191 20 H -0.217 1.217 21 H -0.219 1.219 22 H -0.187 1.187 23 C -0.006 4.006 24 C -0.188 4.188 25 C -0.038 4.038 26 C -0.045 4.045 27 O -0.071 6.071 28 H 0.115 0.885 29 H 0.110 0.890 30 H 0.121 0.879 31 H 0.171 0.829 32 H 0.110 0.890 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.122 0.878 38 H 0.028 0.972 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.088 0.912 42 H 0.057 0.943 43 H 0.082 0.918 44 H 0.114 0.886 45 H 0.124 0.876 46 H 0.137 0.863 47 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -25.632 -0.949 12.864 28.694 hybrid contribution 1.601 0.355 -0.615 1.752 sum -24.031 -0.594 12.249 26.979 Atomic orbital electron populations 1.20546 0.82015 1.05549 1.05024 1.22920 0.95574 0.82843 1.03953 1.22611 0.90116 1.00371 1.08447 1.21453 0.94164 0.94622 1.15994 1.17661 0.82657 0.85096 0.77023 1.90746 1.85493 1.21722 1.48671 1.48079 1.09664 1.17256 1.58491 1.21592 0.85188 0.97354 0.96094 1.21913 1.02275 0.96417 0.95727 1.22261 0.94758 0.96662 0.83838 1.87954 1.67088 1.43749 1.31452 1.24419 0.89502 0.88547 0.96141 1.22609 0.93601 0.92204 0.89502 1.46067 1.05141 1.52200 1.33312 1.19426 0.86687 1.16047 1.14296 0.89317 1.25754 0.98944 1.01375 1.00020 1.70030 1.15319 1.44540 1.30208 0.85022 0.78402 0.78093 0.77600 1.21695 1.21916 1.18664 1.22865 0.84777 0.98551 0.94359 1.22391 0.96619 1.02610 0.97149 1.22688 1.04930 0.82462 0.93745 1.25549 0.84693 0.95000 0.99257 1.83802 1.16749 1.35696 1.70825 0.88544 0.89016 0.87925 0.82853 0.89012 0.89686 0.89932 0.92102 0.91023 0.87813 0.97192 0.94022 0.94123 0.91161 0.94262 0.91768 0.88589 0.87649 0.86250 0.72679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.47 10.40 71.24 0.74 0.27 16 2 C 0.00 -0.06 7.28 24.76 0.18 0.12 16 3 C -0.20 -3.73 10.99 23.65 0.26 -3.47 16 4 C -0.26 -5.20 5.93 -18.99 -0.11 -5.32 16 5 C 0.58 14.61 7.68 86.65 0.67 15.28 16 6 O -0.58 -19.43 16.48 -4.07 -0.07 -19.49 16 7 N -0.60 -12.04 2.97 -822.84 -2.45 -14.48 16 8 C 0.12 2.49 6.43 86.36 0.55 3.04 16 9 C -0.12 -2.90 5.73 30.67 0.18 -2.73 16 10 C 0.08 1.97 2.45 30.62 0.07 2.04 16 11 O -0.38 -12.55 10.01 -148.98 -1.49 -14.04 16 12 C 0.07 2.65 4.30 31.25 0.13 2.78 16 13 C 0.15 7.15 7.24 86.44 0.63 7.77 16 14 N -0.64 -33.28 3.70 -720.90 -2.67 -35.94 16 15 C -0.24 -13.32 10.69 84.03 0.90 -12.43 16 16 H 0.09 4.71 7.83 -2.91 -0.02 4.69 16 17 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 18 N -0.95 -57.97 11.55 21.65 0.25 -57.72 16 19 Si 0.98 45.52 29.56 68.60 2.03 47.54 16 20 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 21 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 22 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 23 C 0.12 4.85 8.77 86.49 0.76 5.61 16 24 C -0.15 -2.68 5.69 30.67 0.17 -2.51 16 25 C 0.08 1.09 5.50 86.36 0.48 1.57 16 26 C 0.02 0.32 9.87 67.39 0.67 0.98 16 27 O -0.18 -2.53 10.52 4.56 0.05 -2.48 16 28 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.10 0.40 8.14 -2.39 -0.02 0.39 16 31 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 32 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.08 2.03 7.01 -2.39 -0.02 2.01 16 34 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 35 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.07 1.62 7.74 -2.39 -0.02 1.60 16 37 H 0.10 3.31 7.80 -2.38 -0.02 3.30 16 38 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 39 H 0.04 2.21 7.42 -2.39 -0.02 2.19 16 40 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 41 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 42 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.12 1.13 3.32 -2.39 -0.01 1.12 16 47 H 0.26 1.28 5.78 -2.91 -0.02 1.27 16 Total: -1.00 -79.10 381.56 3.37 -75.73 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: 0.97 Total: 11.28 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: 6.74 Total: 9.61 kcal Atomic # 7 Polarization: -103.28 SS G_CDS: -4.86 Total: -108.15 kcal Atomic # 8 Polarization: -34.51 SS G_CDS: -1.51 Total: -36.02 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.54 kcal Total: -79.10 3.37 -75.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093529806.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.884 kcal (2) G-P(sol) polarization free energy of solvation -79.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds