Wall clock time and date at job start Tue Mar 31 2020 18:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34515 * 125.79031 * 2 1 4 4 C 1.41386 * 106.83945 * 179.97438 * 3 2 1 5 5 C 1.34516 * 106.84052 * 359.97438 * 4 3 2 6 6 C 1.50700 * 125.78721 * 180.02562 * 5 4 3 7 7 N 1.46498 * 109.47308 * 90.00101 * 6 5 4 8 8 C 1.46504 * 120.00198 * 269.99890 * 7 6 5 9 9 C 1.34775 * 119.99750 * 89.99744 * 7 6 5 10 10 O 1.21347 * 120.00118 * 5.00999 * 9 7 6 11 11 C 1.49447 * 119.99926 * 185.00541 * 9 7 6 12 12 O 1.21355 * 120.00507 * 275.16508 * 11 9 7 13 13 N 1.34782 * 120.00004 * 95.16281 * 11 9 7 14 14 C 1.46921 * 120.63052 * 354.95676 * 13 11 9 15 15 C 1.53190 * 108.77604 * 126.36714 * 14 13 11 16 16 C 1.53037 * 109.31468 * 54.63715 * 15 14 13 17 17 C 1.53038 * 109.53459 * 298.63550 * 16 15 14 18 18 H 1.09006 * 109.49946 * 301.40794 * 17 16 15 19 19 C 1.50700 * 109.52425 * 181.33227 * 17 16 15 20 20 H 1.07999 * 119.99813 * 0.14584 * 19 17 16 21 21 C 1.37882 * 120.00342 * 180.14503 * 19 17 16 22 22 N 1.31511 * 119.99645 * 359.97438 * 21 19 17 23 23 Si 1.86796 * 120.00101 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47456 * 89.99912 * 23 21 19 25 25 H 1.48504 * 109.46974 * 209.99791 * 23 21 19 26 26 H 1.48497 * 109.46944 * 329.99493 * 23 21 19 27 27 C 1.46930 * 120.62944 * 174.92877 * 13 11 9 28 28 O 1.34297 * 108.41802 * 0.26705 * 5 4 3 29 29 H 1.08999 * 109.46765 * 90.00003 * 1 2 3 30 30 H 1.08996 * 109.47063 * 210.00220 * 1 2 3 31 31 H 1.08997 * 109.46732 * 329.99857 * 1 2 3 32 32 H 1.08003 * 126.58018 * 359.97438 * 3 2 1 33 33 H 1.08005 * 126.57955 * 179.97438 * 4 3 2 34 34 H 1.09004 * 109.46936 * 330.00107 * 6 5 4 35 35 H 1.08995 * 109.46803 * 210.00288 * 6 5 4 36 36 H 1.08999 * 109.47102 * 264.80645 * 8 7 6 37 37 H 1.09001 * 109.46618 * 24.80661 * 8 7 6 38 38 H 1.08993 * 109.47109 * 144.80453 * 8 7 6 39 39 H 1.09001 * 109.58778 * 246.15943 * 14 13 11 40 40 H 1.09005 * 109.58775 * 6.58177 * 14 13 11 41 41 H 1.09006 * 109.49676 * 174.59133 * 15 14 13 42 42 H 1.09002 * 109.49996 * 294.68029 * 15 14 13 43 43 H 1.08992 * 109.46269 * 178.61497 * 16 15 14 44 44 H 1.09002 * 109.44827 * 58.64487 * 16 15 14 45 45 H 0.97003 * 119.99994 * 180.02562 * 22 21 19 46 46 H 1.08998 * 109.58981 * 353.42607 * 27 13 11 47 47 H 1.09006 * 109.58034 * 113.84844 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6309 0.6320 0.0006 5 6 3.5814 -0.7123 0.0015 6 6 4.7706 -1.6379 0.0030 7 7 5.1550 -1.9370 1.3846 8 6 6.1266 -1.0854 2.0753 9 6 4.6148 -2.9956 2.0203 10 8 3.8805 -3.7532 1.4209 11 6 4.9203 -3.2363 3.4632 12 8 5.9240 -3.8413 3.7783 13 7 4.0811 -2.7815 4.4147 14 6 2.9214 -1.9536 4.0565 15 6 1.6602 -2.5878 4.6513 16 6 1.8529 -2.7815 6.1571 17 6 3.0314 -3.7259 6.4049 18 1 2.8404 -4.6818 5.9171 19 6 3.2005 -3.9423 7.8866 20 1 2.5327 -3.4569 8.5829 21 6 4.2078 -4.7599 8.3535 22 7 5.0207 -5.3513 7.5056 23 14 4.4169 -5.0287 10.1901 24 1 3.6085 -6.1999 10.6143 25 1 5.8488 -5.2795 10.4938 26 1 3.9599 -3.8204 10.9224 27 6 4.3082 -3.1047 5.8299 28 8 2.2924 -1.0894 -0.0044 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.9666 2.1204 -0.0004 33 1 4.5213 1.2432 0.0004 34 1 5.6043 -1.1591 -0.5107 35 1 4.5109 -2.5637 -0.5104 36 1 7.1217 -1.5202 1.9823 37 1 6.1211 -0.0914 1.6279 38 1 5.8597 -1.0108 3.1294 39 1 3.0506 -0.9493 4.4601 40 1 2.8287 -1.9044 2.9715 41 1 0.8062 -1.9337 4.4750 42 1 1.4820 -3.5544 4.1800 43 1 0.9476 -3.2100 6.5870 44 1 2.0557 -1.8176 6.6240 45 1 5.7292 -5.9269 7.8340 46 1 5.1307 -3.8148 5.9152 47 1 4.5505 -2.1942 6.3783 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261605678.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:58 Heat of formation + Delta-G solvation = -50.317913 kcal Electronic energy + Delta-G solvation = -30217.136306 eV Core-core repulsion = 26173.926535 eV Total energy + Delta-G solvation = -4043.209772 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.73689 -40.53034 -38.50340 -36.75643 -35.95155 -33.43022 -33.30506 -32.41434 -31.84911 -29.92513 -29.39501 -27.00581 -25.99409 -25.08704 -24.46800 -22.28228 -21.90129 -21.83014 -20.34962 -19.52877 -18.36987 -17.55156 -17.06284 -16.94464 -16.25471 -16.10243 -15.84897 -15.10053 -14.75663 -14.57990 -14.19676 -14.01707 -13.75832 -13.64213 -13.42410 -13.18353 -13.11277 -12.99547 -12.88851 -12.77653 -12.66397 -12.56197 -12.26530 -12.14179 -11.98814 -11.78550 -11.05709 -11.03738 -10.94995 -10.52565 -10.42275 -10.26909 -10.04333 -9.96914 -9.32830 -9.17946 -9.07242 -8.89570 -8.47747 -8.45160 -7.93383 -6.02675 -4.11655 1.42834 2.24030 2.36178 2.65367 2.81939 3.00519 3.30127 3.37300 3.39272 3.71132 4.39455 4.42308 4.45097 4.70430 4.84384 4.87824 4.91942 5.17209 5.20817 5.21795 5.25174 5.28228 5.39749 5.44781 5.47464 5.59093 5.63376 5.64448 5.76393 5.92741 5.98039 6.13759 6.15909 6.27331 6.36179 6.53376 6.61085 6.78788 6.92147 6.94253 7.01188 7.08890 7.10308 7.55272 7.80438 7.86989 7.90533 8.05144 8.30888 8.49283 8.92455 9.54228 11.02932 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017350 B = 0.003396 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.409490 B = 8243.256872 C = 9202.702949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.007 4.007 3 C -0.218 4.218 4 C -0.192 4.192 5 C -0.034 4.034 6 C 0.192 3.808 7 N -0.606 5.606 8 C 0.076 3.924 9 C 0.519 3.481 10 O -0.505 6.505 11 C 0.508 3.492 12 O -0.511 6.511 13 N -0.584 5.584 14 C 0.110 3.890 15 C -0.133 4.133 16 C -0.110 4.110 17 C 0.038 3.962 18 H 0.031 0.969 19 C -0.521 4.521 20 H 0.060 0.940 21 C 0.063 3.937 22 N -0.881 5.881 23 Si 0.894 3.106 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.274 1.274 27 C 0.112 3.888 28 O -0.162 6.162 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.147 0.853 33 H 0.147 0.853 34 H 0.114 0.886 35 H 0.104 0.896 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.054 0.946 44 H 0.051 0.949 45 H 0.264 0.736 46 H 0.125 0.875 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.459 15.457 -16.270 22.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.058 4.058 3 C -0.237 4.237 4 C -0.212 4.212 5 C -0.085 4.085 6 C 0.070 3.930 7 N -0.343 5.343 8 C -0.066 4.066 9 C 0.303 3.697 10 O -0.378 6.378 11 C 0.289 3.711 12 O -0.386 6.386 13 N -0.318 5.318 14 C -0.013 4.013 15 C -0.171 4.171 16 C -0.147 4.147 17 C 0.019 3.981 18 H 0.049 0.951 19 C -0.559 4.559 20 H 0.078 0.922 21 C -0.140 4.140 22 N -0.518 5.518 23 Si 0.722 3.278 24 H -0.207 1.207 25 H -0.212 1.212 26 H -0.199 1.199 27 C -0.008 4.008 28 O -0.058 6.058 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.107 0.893 32 H 0.164 0.836 33 H 0.165 0.835 34 H 0.132 0.868 35 H 0.122 0.878 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.073 0.927 44 H 0.069 0.931 45 H 0.075 0.925 46 H 0.143 0.857 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.238 14.257 -16.393 21.965 hybrid contribution 0.185 0.183 0.940 0.975 sum -3.053 14.440 -15.453 21.369 Atomic orbital electron populations 1.20330 0.85178 1.04297 1.03448 1.22544 0.94167 0.84282 1.04773 1.21538 0.92648 0.99319 1.10184 1.21570 0.98256 0.93578 1.07823 1.22802 0.83590 0.94668 1.07469 1.19811 0.91000 0.98713 0.83491 1.47972 1.44129 1.28263 1.13909 1.21912 0.92147 0.94458 0.98106 1.20893 0.79365 0.80525 0.88942 1.90777 1.35299 1.44758 1.66968 1.19901 0.84590 0.81245 0.85389 1.90820 1.25952 1.40806 1.81040 1.48597 1.25113 1.49074 1.09032 1.21673 0.86568 0.94105 0.98982 1.21930 0.95663 1.00799 0.98692 1.21628 1.00435 1.00342 0.92333 1.18999 0.89055 0.93894 0.96143 0.95079 1.21060 1.15047 1.28834 0.90964 0.92215 1.25065 0.95785 0.95316 0.97876 1.69874 1.17915 1.30275 1.33780 0.86563 0.77318 0.78547 0.85405 1.20656 1.21161 1.19883 1.22479 1.04270 1.00276 0.73740 1.84064 1.16193 1.34821 1.70714 0.90140 0.90279 0.89319 0.83568 0.83516 0.86763 0.87821 0.91353 0.90285 0.90761 0.91442 0.91717 0.92066 0.91802 0.92733 0.93063 0.92547 0.85742 0.93201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.57 10.42 36.01 0.38 -0.19 16 2 C -0.01 -0.07 7.32 -35.62 -0.26 -0.33 16 3 C -0.22 -2.16 10.81 -39.70 -0.43 -2.59 16 4 C -0.19 -1.92 10.81 -39.70 -0.43 -2.34 16 5 C -0.03 -0.40 6.90 -35.62 -0.25 -0.64 16 6 C 0.19 2.08 5.95 -5.20 -0.03 2.05 16 7 N -0.61 -8.14 2.86 -183.47 -0.52 -8.67 16 8 C 0.08 0.81 10.23 59.85 0.61 1.42 16 9 C 0.52 9.52 5.45 -11.59 -0.06 9.45 16 10 O -0.51 -10.55 16.65 5.50 0.09 -10.46 16 11 C 0.51 10.77 5.69 -11.58 -0.07 10.71 16 12 O -0.51 -12.57 16.53 5.49 0.09 -12.48 16 13 N -0.58 -12.05 2.97 -173.27 -0.52 -12.57 16 14 C 0.11 1.88 6.36 -3.71 -0.02 1.86 16 15 C -0.13 -2.30 6.08 -26.61 -0.16 -2.46 16 16 C -0.11 -2.20 5.11 -26.69 -0.14 -2.33 16 17 C 0.04 0.94 2.25 -91.66 -0.21 0.74 16 18 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 19 C -0.52 -13.95 8.57 -34.44 -0.29 -14.24 16 20 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 21 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 22 N -0.88 -25.54 11.39 55.43 0.63 -24.90 16 23 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 27 C 0.11 2.67 5.39 -3.71 -0.02 2.65 16 28 O -0.16 -2.21 10.65 5.73 0.06 -2.15 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.15 1.11 8.06 -52.48 -0.42 0.69 16 33 H 0.15 1.09 8.06 -52.48 -0.42 0.67 16 34 H 0.11 0.78 8.07 -51.93 -0.42 0.36 16 35 H 0.10 1.24 7.36 -51.93 -0.38 0.86 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 0.57 8.03 -51.93 -0.42 0.15 16 38 H 0.07 0.92 6.99 -51.93 -0.36 0.55 16 39 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.06 1.08 6.31 -51.93 -0.33 0.76 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 45 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 46 H 0.12 3.47 5.15 -51.93 -0.27 3.20 16 47 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 388.19 15.07 5.85 5.85 Total: -1.00 -34.15 388.19 -8.02 -42.17 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -7.21 Total: 1.82 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: -1.47 Total: 5.35 kcal Atomic # 7 Polarization: -45.73 SS G_CDS: -0.41 Total: -46.14 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: 0.24 Total: -25.09 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.15 -8.02 -42.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261605678.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.145 kcal (2) G-P(sol) polarization free energy of solvation -34.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds