Wall clock time and date at job start Tue Mar 31 2020 18:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34515 * 125.79031 * 2 1 4 4 C 1.41386 * 106.83945 * 179.97438 * 3 2 1 5 5 C 1.34516 * 106.84052 * 359.97438 * 4 3 2 6 6 C 1.50700 * 125.78721 * 180.02562 * 5 4 3 7 7 N 1.46498 * 109.47308 * 90.00101 * 6 5 4 8 8 C 1.46504 * 120.00198 * 269.99890 * 7 6 5 9 9 C 1.34775 * 119.99750 * 89.99744 * 7 6 5 10 10 O 1.21347 * 120.00118 * 5.00999 * 9 7 6 11 11 C 1.49447 * 119.99926 * 185.00541 * 9 7 6 12 12 O 1.21355 * 120.00507 * 275.16508 * 11 9 7 13 13 N 1.34782 * 120.00004 * 95.16281 * 11 9 7 14 14 C 1.46921 * 120.63052 * 354.95676 * 13 11 9 15 15 C 1.53190 * 108.77604 * 126.36714 * 14 13 11 16 16 C 1.53037 * 109.31468 * 54.63715 * 15 14 13 17 17 C 1.53038 * 109.53459 * 298.63550 * 16 15 14 18 18 H 1.09006 * 109.49946 * 301.40794 * 17 16 15 19 19 C 1.50700 * 109.52425 * 181.33227 * 17 16 15 20 20 H 1.07999 * 119.99813 * 0.14584 * 19 17 16 21 21 C 1.37882 * 120.00342 * 180.14503 * 19 17 16 22 22 N 1.31511 * 119.99645 * 359.97438 * 21 19 17 23 23 Si 1.86796 * 120.00101 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47456 * 89.99912 * 23 21 19 25 25 H 1.48504 * 109.46974 * 209.99791 * 23 21 19 26 26 H 1.48497 * 109.46944 * 329.99493 * 23 21 19 27 27 C 1.46930 * 120.62944 * 174.92877 * 13 11 9 28 28 O 1.34297 * 108.41802 * 0.26705 * 5 4 3 29 29 H 1.08999 * 109.46765 * 90.00003 * 1 2 3 30 30 H 1.08996 * 109.47063 * 210.00220 * 1 2 3 31 31 H 1.08997 * 109.46732 * 329.99857 * 1 2 3 32 32 H 1.08003 * 126.58018 * 359.97438 * 3 2 1 33 33 H 1.08005 * 126.57955 * 179.97438 * 4 3 2 34 34 H 1.09004 * 109.46936 * 330.00107 * 6 5 4 35 35 H 1.08995 * 109.46803 * 210.00288 * 6 5 4 36 36 H 1.08999 * 109.47102 * 264.80645 * 8 7 6 37 37 H 1.09001 * 109.46618 * 24.80661 * 8 7 6 38 38 H 1.08993 * 109.47109 * 144.80453 * 8 7 6 39 39 H 1.09001 * 109.58778 * 246.15943 * 14 13 11 40 40 H 1.09005 * 109.58775 * 6.58177 * 14 13 11 41 41 H 1.09006 * 109.49676 * 174.59133 * 15 14 13 42 42 H 1.09002 * 109.49996 * 294.68029 * 15 14 13 43 43 H 1.08992 * 109.46269 * 178.61497 * 16 15 14 44 44 H 1.09002 * 109.44827 * 58.64487 * 16 15 14 45 45 H 0.97003 * 119.99994 * 180.02562 * 22 21 19 46 46 H 1.08998 * 109.58981 * 353.42607 * 27 13 11 47 47 H 1.09006 * 109.58034 * 113.84844 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6309 0.6320 0.0006 5 6 3.5814 -0.7123 0.0015 6 6 4.7706 -1.6379 0.0030 7 7 5.1550 -1.9370 1.3846 8 6 6.1266 -1.0854 2.0753 9 6 4.6148 -2.9956 2.0203 10 8 3.8805 -3.7532 1.4209 11 6 4.9203 -3.2363 3.4632 12 8 5.9240 -3.8413 3.7783 13 7 4.0811 -2.7815 4.4147 14 6 2.9214 -1.9536 4.0565 15 6 1.6602 -2.5878 4.6513 16 6 1.8529 -2.7815 6.1571 17 6 3.0314 -3.7259 6.4049 18 1 2.8404 -4.6818 5.9171 19 6 3.2005 -3.9423 7.8866 20 1 2.5327 -3.4569 8.5829 21 6 4.2078 -4.7599 8.3535 22 7 5.0207 -5.3513 7.5056 23 14 4.4169 -5.0287 10.1901 24 1 3.6085 -6.1999 10.6143 25 1 5.8488 -5.2795 10.4938 26 1 3.9599 -3.8204 10.9224 27 6 4.3082 -3.1047 5.8299 28 8 2.2924 -1.0894 -0.0044 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.9666 2.1204 -0.0004 33 1 4.5213 1.2432 0.0004 34 1 5.6043 -1.1591 -0.5107 35 1 4.5109 -2.5637 -0.5104 36 1 7.1217 -1.5202 1.9823 37 1 6.1211 -0.0914 1.6279 38 1 5.8597 -1.0108 3.1294 39 1 3.0506 -0.9493 4.4601 40 1 2.8287 -1.9044 2.9715 41 1 0.8062 -1.9337 4.4750 42 1 1.4820 -3.5544 4.1800 43 1 0.9476 -3.2100 6.5870 44 1 2.0557 -1.8176 6.6240 45 1 5.7292 -5.9269 7.8340 46 1 5.1307 -3.8148 5.9152 47 1 4.5505 -2.1942 6.3783 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261605678.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:57 Heat of formation + Delta-G solvation = -72.245120 kcal Electronic energy + Delta-G solvation = -30218.087141 eV Core-core repulsion = 26173.926535 eV Total energy + Delta-G solvation = -4044.160607 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.53211 -42.02838 -40.03984 -38.49027 -37.15121 -35.37156 -34.06758 -33.62916 -33.15636 -31.71978 -30.23434 -28.23378 -27.34841 -26.85990 -25.62583 -23.72629 -23.46849 -22.68741 -21.33060 -20.97725 -19.85113 -19.07366 -18.26688 -18.19764 -18.01899 -17.37987 -17.01504 -16.56354 -16.17950 -15.86023 -15.82128 -15.36045 -15.15363 -14.95409 -14.58387 -14.44360 -14.31508 -14.14150 -13.94810 -13.75632 -13.69164 -13.68019 -13.58663 -13.40820 -12.96554 -12.89388 -12.79368 -12.62397 -12.52269 -12.33402 -12.26180 -11.94436 -11.74135 -11.17854 -11.02155 -10.81597 -10.65302 -10.54140 -10.15552 -9.67978 -9.24941 -8.12337 -6.29743 0.55011 0.88351 1.14964 1.40232 1.43114 1.45441 1.54267 1.75467 2.05250 2.35477 2.43320 3.06430 3.16987 3.68830 3.81599 3.93944 3.99799 4.08183 4.15103 4.17306 4.19524 4.40329 4.43684 4.55864 4.59983 4.61653 4.65427 4.72054 4.72329 4.78554 4.89463 4.93772 4.98283 5.07839 5.11142 5.15188 5.16810 5.24901 5.30819 5.36569 5.55784 5.68219 5.78042 5.82610 5.91946 6.23658 6.28735 6.30075 6.53386 6.76395 6.85492 7.40932 8.91893 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017350 B = 0.003396 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.409490 B = 8243.256872 C = 9202.702949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.023 4.023 3 C -0.223 4.223 4 C -0.177 4.177 5 C -0.063 4.063 6 C 0.191 3.809 7 N -0.589 5.589 8 C 0.069 3.931 9 C 0.524 3.476 10 O -0.542 6.542 11 C 0.501 3.499 12 O -0.558 6.558 13 N -0.585 5.585 14 C 0.111 3.889 15 C -0.126 4.126 16 C -0.101 4.101 17 C 0.035 3.965 18 H -0.019 1.019 19 C -0.533 4.533 20 H 0.067 0.933 21 C 0.010 3.990 22 N -0.918 5.918 23 Si 0.961 3.039 24 H -0.278 1.278 25 H -0.287 1.287 26 H -0.258 1.258 27 C 0.125 3.875 28 O -0.198 6.198 29 H 0.093 0.907 30 H 0.069 0.931 31 H 0.110 0.890 32 H 0.170 0.830 33 H 0.177 0.823 34 H 0.163 0.837 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.126 0.874 38 H 0.055 0.945 39 H 0.099 0.901 40 H 0.071 0.929 41 H 0.105 0.895 42 H 0.039 0.961 43 H 0.056 0.944 44 H 0.069 0.931 45 H 0.261 0.739 46 H 0.081 0.919 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.256 19.281 -16.774 25.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.074 4.074 3 C -0.242 4.242 4 C -0.197 4.197 5 C -0.114 4.114 6 C 0.070 3.930 7 N -0.322 5.322 8 C -0.072 4.072 9 C 0.307 3.693 10 O -0.419 6.419 11 C 0.283 3.717 12 O -0.436 6.436 13 N -0.317 5.317 14 C -0.010 4.010 15 C -0.164 4.164 16 C -0.139 4.139 17 C 0.015 3.985 18 H 0.000 1.000 19 C -0.571 4.571 20 H 0.086 0.914 21 C -0.190 4.190 22 N -0.556 5.556 23 Si 0.786 3.214 24 H -0.204 1.204 25 H -0.213 1.213 26 H -0.182 1.182 27 C 0.004 3.996 28 O -0.096 6.096 29 H 0.112 0.888 30 H 0.088 0.912 31 H 0.129 0.871 32 H 0.188 0.812 33 H 0.195 0.805 34 H 0.180 0.820 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.144 0.856 38 H 0.074 0.926 39 H 0.117 0.883 40 H 0.089 0.911 41 H 0.123 0.877 42 H 0.058 0.942 43 H 0.075 0.925 44 H 0.087 0.913 45 H 0.070 0.930 46 H 0.099 0.901 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.054 18.157 -16.922 25.149 hybrid contribution 0.402 -0.946 1.030 1.455 sum -3.652 17.211 -15.892 23.708 Atomic orbital electron populations 1.20487 0.83406 1.04907 1.04518 1.23249 0.95488 0.84126 1.04515 1.21920 0.92580 1.00161 1.09537 1.21955 0.99409 0.92881 1.05439 1.22934 0.83166 0.95512 1.09740 1.20158 0.92768 0.98579 0.81482 1.48025 1.42897 1.26454 1.14873 1.22189 0.91428 0.96261 0.97302 1.20285 0.79795 0.81832 0.87418 1.90761 1.37495 1.46537 1.67073 1.20552 0.83888 0.80257 0.87003 1.90778 1.27959 1.42710 1.82194 1.48593 1.26092 1.49191 1.07834 1.21905 0.84847 0.94725 0.99567 1.21894 0.97415 1.00727 0.96374 1.21502 0.98174 0.99701 0.94503 1.18955 0.91570 0.93013 0.94926 1.00035 1.21470 1.14842 1.28587 0.92214 0.91446 1.25922 0.95530 0.95142 1.02368 1.70079 1.18568 1.31141 1.35859 0.85504 0.76996 0.78850 0.80011 1.20439 1.21313 1.18236 1.21960 1.02373 0.99349 0.75913 1.84047 1.17361 1.36525 1.71619 0.88835 0.91152 0.87139 0.81210 0.80528 0.81989 0.89677 0.90739 0.85593 0.92595 0.88296 0.91091 0.87670 0.94164 0.92476 0.91272 0.93023 0.90072 0.92390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.99 10.42 71.24 0.74 -0.25 16 2 C -0.02 -0.46 7.32 24.83 0.18 -0.28 16 3 C -0.22 -3.66 10.81 22.19 0.24 -3.42 16 4 C -0.18 -2.84 10.81 22.19 0.24 -2.60 16 5 C -0.06 -1.34 6.90 24.83 0.17 -1.17 16 6 C 0.19 3.75 5.95 85.63 0.51 4.26 16 7 N -0.59 -15.06 2.86 -852.74 -2.44 -17.50 16 8 C 0.07 1.32 10.23 127.77 1.31 2.62 16 9 C 0.52 19.58 5.45 87.27 0.48 20.06 16 10 O -0.54 -23.52 16.65 -3.24 -0.05 -23.58 16 11 C 0.50 22.12 5.69 87.27 0.50 22.62 16 12 O -0.56 -29.18 16.53 -3.26 -0.05 -29.23 16 13 N -0.58 -24.67 2.97 -820.47 -2.44 -27.11 16 14 C 0.11 3.65 6.36 86.36 0.55 4.20 16 15 C -0.13 -4.20 6.08 30.67 0.19 -4.01 16 16 C -0.10 -3.95 5.11 30.62 0.16 -3.80 16 17 C 0.03 1.76 2.25 -11.46 -0.03 1.74 16 18 H -0.02 -1.12 8.14 -2.38 -0.02 -1.14 16 19 C -0.53 -29.01 8.57 25.60 0.22 -28.80 16 20 H 0.07 3.49 7.74 -2.91 -0.02 3.46 16 21 C 0.01 0.55 5.30 84.66 0.45 0.99 16 22 N -0.92 -55.79 11.39 21.45 0.24 -55.54 16 23 Si 0.96 43.81 29.54 68.60 2.03 45.83 16 24 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 25 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 26 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 27 C 0.13 6.20 5.39 86.36 0.47 6.67 16 28 O -0.20 -5.21 10.65 -2.40 -0.03 -5.24 16 29 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.11 0.89 8.14 -2.39 -0.02 0.88 16 32 H 0.17 1.86 8.06 -2.91 -0.02 1.83 16 33 H 0.18 1.64 8.06 -2.91 -0.02 1.61 16 34 H 0.16 1.56 8.07 -2.39 -0.02 1.54 16 35 H 0.08 2.03 7.36 -2.39 -0.02 2.01 16 36 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.13 1.22 8.03 -2.39 -0.02 1.20 16 38 H 0.06 1.31 6.99 -2.39 -0.02 1.29 16 39 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 40 H 0.07 2.29 6.31 -2.38 -0.02 2.28 16 41 H 0.10 2.64 8.14 -2.38 -0.02 2.62 16 42 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 44 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 45 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 46 H 0.08 4.81 5.15 -2.39 -0.01 4.80 16 47 H 0.06 2.72 8.14 -2.38 -0.02 2.70 16 Total: -1.00 -81.01 388.19 4.59 -76.42 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: 0.97 Total: 17.10 kcal Atomic # 6 Polarization: 12.48 SS G_CDS: 6.36 Total: 18.84 kcal Atomic # 7 Polarization: -95.52 SS G_CDS: -4.63 Total: -100.15 kcal Atomic # 8 Polarization: -57.91 SS G_CDS: -0.13 Total: -58.05 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Total: -81.01 4.59 -76.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261605678.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.177 kcal (2) G-P(sol) polarization free energy of solvation -81.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds