Wall clock time and date at job start Tue Mar 31 2020 20:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 110.64503 * 2 1 4 4 N 1.46499 * 109.46775 * 56.85980 * 3 2 1 5 5 C 1.36941 * 120.00224 * 179.97438 * 4 3 2 6 6 H 1.08002 * 119.99552 * 0.02562 * 5 4 3 7 7 C 1.38816 * 120.00177 * 180.02562 * 5 4 3 8 8 N 1.31621 * 119.99935 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99901 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46887 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47290 * 119.99719 * 9 7 5 12 12 H 1.48499 * 109.47016 * 240.00207 * 9 7 5 13 13 C 1.55151 * 110.87245 * 123.25466 * 2 1 3 14 14 C 1.55125 * 101.49082 * 82.76523 * 13 2 1 15 15 N 1.47428 * 104.72352 * 37.29294 * 14 13 2 16 16 C 1.34768 * 125.64895 * 155.81770 * 15 14 13 17 17 O 1.21284 * 120.00031 * 184.56398 * 16 15 14 18 18 C 1.50706 * 120.00196 * 4.57056 * 16 15 14 19 19 C 1.53004 * 112.84749 * 67.20805 * 18 16 15 20 20 F 1.39902 * 109.47136 * 51.74744 * 19 18 16 21 21 F 1.39903 * 109.46893 * 291.74290 * 19 18 16 22 22 F 1.39904 * 109.46781 * 171.74357 * 19 18 16 23 23 C 1.53776 * 113.61326 * 198.40620 * 18 16 15 24 24 C 1.53953 * 87.02134 * 89.22899 * 23 18 16 25 25 C 1.53778 * 113.61030 * 296.01388 * 18 16 15 26 26 C 1.47026 * 108.69917 * 335.55658 * 15 14 13 27 27 H 1.08997 * 109.47312 * 183.14317 * 1 2 3 28 28 H 1.09003 * 109.46872 * 303.13967 * 1 2 3 29 29 H 1.08997 * 109.47014 * 63.13273 * 1 2 3 30 30 H 1.08996 * 109.47278 * 176.85505 * 3 2 1 31 31 H 1.08999 * 109.47089 * 296.86235 * 3 2 1 32 32 H 0.97006 * 120.00416 * 0.02562 * 4 3 2 33 33 H 0.97001 * 119.99937 * 179.97438 * 8 7 5 34 34 H 1.09006 * 111.00620 * 201.00281 * 13 2 1 35 35 H 1.09007 * 111.00484 * 324.81548 * 13 2 1 36 36 H 1.09002 * 110.49415 * 278.45490 * 14 13 2 37 37 H 1.08994 * 110.34583 * 156.06048 * 14 13 2 38 38 H 1.09003 * 113.61132 * 203.74894 * 23 18 16 39 39 H 1.08998 * 113.61936 * 334.64922 * 23 18 16 40 40 H 1.08999 * 113.53519 * 270.80872 * 24 23 18 41 41 H 1.09001 * 113.74370 * 139.94104 * 24 23 18 42 42 H 1.08990 * 113.61973 * 25.34864 * 25 18 16 43 43 H 1.08998 * 113.61215 * 156.25138 * 25 18 16 44 44 H 1.09004 * 109.87915 * 120.70023 * 26 15 14 45 45 H 1.08991 * 109.88188 * 241.86592 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0694 1.4318 0.0000 4 7 1.5350 2.1549 1.1566 5 6 1.8820 3.4629 1.3665 6 1 2.5494 3.9614 0.6791 7 6 1.3760 4.1479 2.4627 8 7 0.5622 3.5404 3.3000 9 14 1.8488 5.9323 2.7486 10 1 2.7685 6.3792 1.6717 11 1 0.6268 6.7760 2.7383 12 1 2.5276 6.0599 4.0632 13 6 2.0828 -0.7950 1.2123 14 6 2.0140 -2.2518 0.6838 15 7 2.3755 -2.1507 -0.7418 16 6 2.8901 -3.1435 -1.4940 17 8 3.2281 -2.9248 -2.6381 18 6 3.0453 -4.5257 -0.9136 19 6 1.7041 -5.2021 -0.6230 20 9 0.8979 -5.1491 -1.7652 21 9 1.0654 -4.5381 0.4299 22 9 1.9226 -6.5376 -0.2680 23 6 4.0274 -5.4149 -1.6944 24 6 5.1346 -4.8527 -0.7844 25 6 4.0364 -4.5930 0.2603 26 6 2.0759 -0.7891 -1.2087 27 1 -0.3634 -1.0261 0.0563 28 1 -0.3633 0.5618 0.8605 29 1 -0.3633 0.4644 -0.9167 30 1 3.1577 1.4100 0.0564 31 1 1.7630 1.9355 -0.9168 32 1 0.9358 1.7070 1.7742 33 1 0.2089 4.0190 4.0662 34 1 3.1097 -0.5046 1.4346 35 1 1.4449 -0.6673 2.0869 36 1 1.0050 -2.6498 0.7920 37 1 2.7296 -2.8810 1.2130 38 1 3.8516 -6.4822 -1.5598 39 1 4.1355 -5.1314 -2.7413 40 1 5.5946 -3.9428 -1.1698 41 1 5.8666 -5.5977 -0.4724 42 1 4.1518 -3.6470 0.7891 43 1 3.8631 -5.4351 0.9302 44 1 2.9851 -0.3161 -1.5801 45 1 1.3251 -0.8247 -1.9979 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278512519.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:41 Heat of formation + Delta-G solvation = -145.120679 kcal Electronic energy + Delta-G solvation = -31099.751749 eV Core-core repulsion = 26510.574280 eV Total energy + Delta-G solvation = -4589.177468 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.46327 -47.99161 -47.89260 -41.07437 -39.05066 -37.35227 -34.94133 -32.77643 -30.44366 -29.48514 -29.21955 -26.90021 -26.26432 -25.60853 -24.01056 -23.32146 -22.43935 -21.22787 -19.29703 -19.03220 -18.69940 -18.56681 -18.19803 -17.15496 -16.55325 -16.31271 -15.67712 -15.22216 -14.78520 -14.71693 -14.58627 -14.40904 -14.17813 -14.06165 -14.04037 -13.89081 -13.71671 -13.60934 -13.19557 -12.93195 -12.86025 -12.74870 -12.50950 -12.49406 -12.07436 -11.71290 -11.48471 -11.39500 -11.08527 -11.03721 -10.98319 -10.85573 -10.62085 -10.35522 -10.23989 -10.11748 -9.92938 -9.68108 -8.90650 -8.73620 -6.94571 -5.79784 -3.07854 1.93854 2.57971 2.61092 3.30210 3.41646 3.47104 3.47954 3.49694 3.61164 3.96335 4.16473 4.21811 4.26988 4.52328 4.63018 4.71625 4.87239 5.01245 5.10557 5.12540 5.29064 5.38013 5.38415 5.46350 5.53716 5.56562 5.59830 5.69745 5.79182 5.83126 5.94373 5.99032 6.04462 6.18905 6.26272 6.35409 6.42873 6.63011 6.72969 6.80566 7.30084 7.68722 7.83471 8.39418 9.51212 10.07873 10.43055 11.43158 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.023728 B = 0.002864 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.766616 B = 9772.997572 C = 9992.782476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.077 4.077 3 C 0.169 3.831 4 N -0.728 5.728 5 C -0.238 4.238 6 H 0.070 0.930 7 C -0.013 4.013 8 N -0.933 5.933 9 Si 0.906 3.094 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.292 1.292 13 C -0.116 4.116 14 C 0.079 3.921 15 N -0.603 5.603 16 C 0.555 3.445 17 O -0.520 6.520 18 C -0.163 4.163 19 C 0.471 3.529 20 F -0.176 7.176 21 F -0.172 7.172 22 F -0.176 7.176 23 C -0.111 4.111 24 C -0.133 4.133 25 C -0.123 4.123 26 C 0.119 3.881 27 H 0.046 0.954 28 H 0.074 0.926 29 H 0.055 0.945 30 H 0.022 0.978 31 H 0.022 0.978 32 H 0.385 0.615 33 H 0.254 0.746 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.102 0.898 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.094 0.906 43 H 0.104 0.896 44 H 0.074 0.926 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.162 -21.968 -6.417 23.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.078 4.078 3 C 0.041 3.959 4 N -0.373 5.373 5 C -0.369 4.369 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.582 5.582 9 Si 0.737 3.263 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.219 1.219 13 C -0.154 4.154 14 C -0.043 4.043 15 N -0.335 5.335 16 C 0.340 3.660 17 O -0.396 6.396 18 C -0.168 4.168 19 C 0.416 3.584 20 F -0.157 7.157 21 F -0.153 7.153 22 F -0.157 7.157 23 C -0.149 4.149 24 C -0.170 4.170 25 C -0.160 4.160 26 C -0.003 4.003 27 H 0.065 0.935 28 H 0.093 0.907 29 H 0.074 0.926 30 H 0.039 0.961 31 H 0.040 0.960 32 H 0.220 0.780 33 H 0.064 0.936 34 H 0.098 0.902 35 H 0.109 0.891 36 H 0.104 0.896 37 H 0.097 0.903 38 H 0.121 0.879 39 H 0.117 0.883 40 H 0.109 0.891 41 H 0.103 0.897 42 H 0.112 0.888 43 H 0.123 0.877 44 H 0.092 0.908 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.409 -21.742 -7.103 23.503 hybrid contribution -0.409 0.762 0.560 1.030 sum 5.000 -20.980 -6.543 22.538 Atomic orbital electron populations 1.21774 0.93173 1.00840 1.03280 1.21805 0.96577 0.96219 0.93218 1.20589 0.95661 0.87813 0.91828 1.42345 1.56982 1.10739 1.27240 1.19271 1.22901 0.87868 1.06901 0.91175 1.24715 1.00067 0.98309 0.97814 1.69659 1.36338 1.36204 1.15996 0.86128 0.77561 0.85006 0.77567 1.20583 1.21896 1.21906 1.22893 1.02828 0.91594 0.98119 1.23135 1.01662 0.99391 0.80114 1.48427 1.61344 1.11765 1.11971 1.18657 0.78327 0.83726 0.85302 1.90725 1.49288 1.82353 1.17269 1.23516 0.92085 0.96806 1.04392 1.20034 0.86709 0.77039 0.74591 1.93226 1.75775 1.96160 1.50581 1.93195 1.84057 1.79664 1.58368 1.93169 1.94742 1.35820 1.92005 1.22986 0.92336 0.98526 1.01029 1.22831 0.96268 1.02334 0.95580 1.23178 0.93240 1.04675 0.94932 1.22132 1.00743 0.80326 0.97111 0.93482 0.90669 0.92560 0.96071 0.96007 0.78039 0.93578 0.90203 0.89059 0.89632 0.90263 0.87945 0.88315 0.89131 0.89663 0.88784 0.87720 0.90771 0.91108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 8.28 37.16 0.31 -1.71 16 2 C -0.08 -1.17 0.61 -152.68 -0.09 -1.27 16 3 C 0.17 3.23 5.08 -4.04 -0.02 3.21 16 4 N -0.73 -17.40 5.15 -59.91 -0.31 -17.71 16 5 C -0.24 -6.47 9.99 -15.06 -0.15 -6.62 16 6 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 7 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 8 N -0.93 -27.36 13.06 55.49 0.72 -26.64 16 9 Si 0.91 22.05 29.55 -169.99 -5.02 17.02 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 13 C -0.12 -1.61 5.73 -24.47 -0.14 -1.75 16 14 C 0.08 0.92 4.58 -2.41 -0.01 0.90 16 15 N -0.60 -7.89 3.32 -170.38 -0.57 -8.45 16 16 C 0.55 7.41 6.16 -10.99 -0.07 7.34 16 17 O -0.52 -8.48 16.29 5.55 0.09 -8.39 16 18 C -0.16 -1.66 0.49 -154.85 -0.08 -1.73 16 19 C 0.47 5.01 2.62 37.16 0.10 5.11 16 20 F -0.18 -2.20 16.95 2.25 0.04 -2.16 16 21 F -0.17 -1.86 13.03 2.25 0.03 -1.83 16 22 F -0.18 -1.68 15.73 2.25 0.04 -1.65 16 23 C -0.11 -0.94 7.00 -25.83 -0.18 -1.12 16 24 C -0.13 -0.97 7.81 -25.83 -0.20 -1.17 16 25 C -0.12 -0.94 6.17 -25.92 -0.16 -1.10 16 26 C 0.12 1.69 6.05 -3.06 -0.02 1.67 16 27 H 0.05 0.63 7.41 -51.93 -0.38 0.24 16 28 H 0.07 1.31 6.69 -51.93 -0.35 0.96 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.02 0.42 8.10 -51.93 -0.42 0.00 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.38 9.53 6.21 -40.82 -0.25 9.27 16 33 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 34 H 0.08 1.15 8.02 -51.93 -0.42 0.73 16 35 H 0.09 1.32 8.04 -51.93 -0.42 0.90 16 36 H 0.09 0.99 5.64 -51.93 -0.29 0.70 16 37 H 0.08 0.77 4.92 -51.93 -0.26 0.51 16 38 H 0.10 0.70 7.22 -51.93 -0.37 0.32 16 39 H 0.10 0.96 7.35 -51.93 -0.38 0.58 16 40 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.09 0.74 5.98 -51.93 -0.31 0.43 16 43 H 0.10 0.64 7.78 -51.93 -0.40 0.23 16 44 H 0.07 1.09 7.82 -51.93 -0.41 0.68 16 45 H 0.07 1.01 7.84 -51.93 -0.41 0.60 16 LS Contribution 358.22 15.07 5.40 5.40 Total: -1.00 -30.82 358.22 -6.70 -37.52 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -6.31 Total: 5.59 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -0.81 Total: 1.30 kcal Atomic # 7 Polarization: -52.65 SS G_CDS: -0.15 Total: -52.80 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: 0.09 Total: -8.39 kcal Atomic # 9 Polarization: -5.74 SS G_CDS: 0.10 Total: -5.64 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.82 -6.70 -37.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278512519.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.603 kcal (2) G-P(sol) polarization free energy of solvation -30.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds