Wall clock time and date at job start Tue Mar 31 2020 20:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 110.64503 * 2 1 4 4 N 1.46499 * 109.46775 * 56.85980 * 3 2 1 5 5 C 1.36941 * 120.00224 * 179.97438 * 4 3 2 6 6 H 1.08002 * 119.99552 * 0.02562 * 5 4 3 7 7 C 1.38816 * 120.00177 * 180.02562 * 5 4 3 8 8 N 1.31621 * 119.99935 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99901 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46887 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47290 * 119.99719 * 9 7 5 12 12 H 1.48499 * 109.47016 * 240.00207 * 9 7 5 13 13 C 1.55151 * 110.87245 * 123.25466 * 2 1 3 14 14 C 1.55125 * 101.49082 * 82.76523 * 13 2 1 15 15 N 1.47428 * 104.72352 * 37.29294 * 14 13 2 16 16 C 1.34768 * 125.64895 * 155.81770 * 15 14 13 17 17 O 1.21284 * 120.00031 * 184.56398 * 16 15 14 18 18 C 1.50706 * 120.00196 * 4.57056 * 16 15 14 19 19 C 1.53004 * 112.84749 * 67.20805 * 18 16 15 20 20 F 1.39902 * 109.47136 * 51.74744 * 19 18 16 21 21 F 1.39903 * 109.46893 * 291.74290 * 19 18 16 22 22 F 1.39904 * 109.46781 * 171.74357 * 19 18 16 23 23 C 1.53776 * 113.61326 * 198.40620 * 18 16 15 24 24 C 1.53953 * 87.02134 * 89.22899 * 23 18 16 25 25 C 1.53778 * 113.61030 * 296.01388 * 18 16 15 26 26 C 1.47026 * 108.69917 * 335.55658 * 15 14 13 27 27 H 1.08997 * 109.47312 * 183.14317 * 1 2 3 28 28 H 1.09003 * 109.46872 * 303.13967 * 1 2 3 29 29 H 1.08997 * 109.47014 * 63.13273 * 1 2 3 30 30 H 1.08996 * 109.47278 * 176.85505 * 3 2 1 31 31 H 1.08999 * 109.47089 * 296.86235 * 3 2 1 32 32 H 0.97006 * 120.00416 * 0.02562 * 4 3 2 33 33 H 0.97001 * 119.99937 * 179.97438 * 8 7 5 34 34 H 1.09006 * 111.00620 * 201.00281 * 13 2 1 35 35 H 1.09007 * 111.00484 * 324.81548 * 13 2 1 36 36 H 1.09002 * 110.49415 * 278.45490 * 14 13 2 37 37 H 1.08994 * 110.34583 * 156.06048 * 14 13 2 38 38 H 1.09003 * 113.61132 * 203.74894 * 23 18 16 39 39 H 1.08998 * 113.61936 * 334.64922 * 23 18 16 40 40 H 1.08999 * 113.53519 * 270.80872 * 24 23 18 41 41 H 1.09001 * 113.74370 * 139.94104 * 24 23 18 42 42 H 1.08990 * 113.61973 * 25.34864 * 25 18 16 43 43 H 1.08998 * 113.61215 * 156.25138 * 25 18 16 44 44 H 1.09004 * 109.87915 * 120.70023 * 26 15 14 45 45 H 1.08991 * 109.88188 * 241.86592 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0694 1.4318 0.0000 4 7 1.5350 2.1549 1.1566 5 6 1.8820 3.4629 1.3665 6 1 2.5494 3.9614 0.6791 7 6 1.3760 4.1479 2.4627 8 7 0.5622 3.5404 3.3000 9 14 1.8488 5.9323 2.7486 10 1 2.7685 6.3792 1.6717 11 1 0.6268 6.7760 2.7383 12 1 2.5276 6.0599 4.0632 13 6 2.0828 -0.7950 1.2123 14 6 2.0140 -2.2518 0.6838 15 7 2.3755 -2.1507 -0.7418 16 6 2.8901 -3.1435 -1.4940 17 8 3.2281 -2.9248 -2.6381 18 6 3.0453 -4.5257 -0.9136 19 6 1.7041 -5.2021 -0.6230 20 9 0.8979 -5.1491 -1.7652 21 9 1.0654 -4.5381 0.4299 22 9 1.9226 -6.5376 -0.2680 23 6 4.0274 -5.4149 -1.6944 24 6 5.1346 -4.8527 -0.7844 25 6 4.0364 -4.5930 0.2603 26 6 2.0759 -0.7891 -1.2087 27 1 -0.3634 -1.0261 0.0563 28 1 -0.3633 0.5618 0.8605 29 1 -0.3633 0.4644 -0.9167 30 1 3.1577 1.4100 0.0564 31 1 1.7630 1.9355 -0.9168 32 1 0.9358 1.7070 1.7742 33 1 0.2089 4.0190 4.0662 34 1 3.1097 -0.5046 1.4346 35 1 1.4449 -0.6673 2.0869 36 1 1.0050 -2.6498 0.7920 37 1 2.7296 -2.8810 1.2130 38 1 3.8516 -6.4822 -1.5598 39 1 4.1355 -5.1314 -2.7413 40 1 5.5946 -3.9428 -1.1698 41 1 5.8666 -5.5977 -0.4724 42 1 4.1518 -3.6470 0.7891 43 1 3.8631 -5.4351 0.9302 44 1 2.9851 -0.3161 -1.5801 45 1 1.3251 -0.8247 -1.9979 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278512519.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:40 Heat of formation + Delta-G solvation = -163.174636 kcal Electronic energy + Delta-G solvation = -31100.534627 eV Core-core repulsion = 26510.574280 eV Total energy + Delta-G solvation = -4589.960347 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -51.29320 -48.79887 -48.75771 -42.03138 -40.12009 -38.35432 -36.55768 -34.40954 -32.18812 -30.65758 -30.07678 -28.05450 -27.39804 -26.81538 -25.17960 -24.36231 -24.03528 -22.08831 -20.37602 -19.99770 -19.60309 -19.40471 -19.33167 -18.96260 -17.65890 -17.19084 -16.74711 -16.50162 -16.02457 -15.69283 -15.67460 -15.51029 -15.36632 -15.15153 -15.09166 -14.90044 -14.83531 -14.74823 -14.55381 -14.17924 -13.91283 -13.67093 -13.56239 -13.43250 -13.26583 -13.02102 -12.90474 -12.84748 -12.65270 -12.13289 -12.07104 -12.06478 -11.80932 -11.71528 -11.57566 -11.52256 -11.38816 -11.09553 -10.92401 -9.82898 -8.95912 -7.93156 -5.20355 0.98958 1.48880 1.49547 1.58695 1.60056 1.71146 2.55075 2.57378 2.65610 2.77448 3.15338 3.33471 3.40711 3.43667 3.51164 3.58127 3.63750 3.78659 4.13453 4.18827 4.21074 4.29773 4.36991 4.46950 4.56659 4.60836 4.69912 4.72012 4.79351 4.83052 4.89973 4.94226 4.98641 4.99645 5.06974 5.16179 5.18635 5.24560 5.30454 5.44953 5.52562 6.25387 6.29904 6.78399 7.37472 8.12014 8.37709 9.30208 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.023728 B = 0.002864 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.766616 B = 9772.997572 C = 9992.782476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.070 4.070 3 C 0.169 3.831 4 N -0.735 5.735 5 C -0.243 4.243 6 H 0.072 0.928 7 C -0.070 4.070 8 N -0.965 5.965 9 Si 0.968 3.032 10 H -0.269 1.269 11 H -0.295 1.295 12 H -0.293 1.293 13 C -0.113 4.113 14 C 0.087 3.913 15 N -0.603 5.603 16 C 0.552 3.448 17 O -0.556 6.556 18 C -0.169 4.169 19 C 0.472 3.528 20 F -0.190 7.190 21 F -0.173 7.173 22 F -0.166 7.166 23 C -0.110 4.110 24 C -0.127 4.127 25 C -0.115 4.115 26 C 0.125 3.875 27 H 0.067 0.933 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.021 0.979 31 H 0.018 0.982 32 H 0.379 0.621 33 H 0.251 0.749 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.105 0.895 38 H 0.123 0.877 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.111 0.889 42 H 0.093 0.907 43 H 0.129 0.871 44 H 0.068 0.932 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.081 -23.535 -6.088 25.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.071 4.071 3 C 0.042 3.958 4 N -0.379 5.379 5 C -0.375 4.375 6 H 0.090 0.910 7 C -0.263 4.263 8 N -0.616 5.616 9 Si 0.798 3.202 10 H -0.194 1.194 11 H -0.222 1.222 12 H -0.220 1.220 13 C -0.151 4.151 14 C -0.034 4.034 15 N -0.335 5.335 16 C 0.339 3.661 17 O -0.434 6.434 18 C -0.174 4.174 19 C 0.417 3.583 20 F -0.172 7.172 21 F -0.154 7.154 22 F -0.148 7.148 23 C -0.147 4.147 24 C -0.164 4.164 25 C -0.152 4.152 26 C 0.002 3.998 27 H 0.085 0.915 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.039 0.961 31 H 0.036 0.964 32 H 0.213 0.787 33 H 0.060 0.940 34 H 0.092 0.908 35 H 0.104 0.896 36 H 0.110 0.890 37 H 0.123 0.877 38 H 0.141 0.859 39 H 0.099 0.901 40 H 0.093 0.907 41 H 0.130 0.870 42 H 0.111 0.889 43 H 0.147 0.853 44 H 0.086 0.914 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.345 -23.325 -6.791 25.108 hybrid contribution -0.684 1.222 0.385 1.452 sum 5.660 -22.103 -6.406 23.699 Atomic orbital electron populations 1.21688 0.92955 1.01657 1.02062 1.21628 0.96582 0.94152 0.94697 1.20672 0.95452 0.89788 0.89857 1.42467 1.56925 1.10168 1.28353 1.19623 1.22110 0.89230 1.06545 0.91045 1.25451 1.00708 1.02081 0.98038 1.69795 1.37733 1.37538 1.16499 0.85147 0.77096 0.80534 0.77418 1.19405 1.22218 1.22014 1.22828 1.02134 0.92894 0.97290 1.23172 1.02842 0.98123 0.79246 1.48473 1.61184 1.11293 1.12566 1.19182 0.77304 0.84773 0.84854 1.90707 1.50688 1.83179 1.18833 1.23577 0.92547 0.94916 1.06317 1.20083 0.86534 0.77477 0.74163 1.93202 1.76257 1.96261 1.51448 1.93186 1.84138 1.79750 1.58308 1.93187 1.94649 1.35071 1.91859 1.23074 0.92199 0.99355 1.00085 1.22799 0.96431 1.02295 0.94849 1.23286 0.91888 1.05629 0.94435 1.21940 1.00379 0.81084 0.96425 0.91452 0.93099 0.92635 0.96125 0.96410 0.78722 0.94023 0.90791 0.89650 0.89027 0.87730 0.85857 0.90075 0.90718 0.87009 0.88882 0.85282 0.91405 0.91134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.78 8.28 71.98 0.60 -3.19 16 2 C -0.07 -2.09 0.61 -50.99 -0.03 -2.12 16 3 C 0.17 6.50 5.08 86.38 0.44 6.94 16 4 N -0.74 -35.52 5.15 -343.45 -1.77 -37.29 16 5 C -0.24 -13.25 9.99 84.03 0.84 -12.41 16 6 H 0.07 3.80 7.83 -2.91 -0.02 3.77 16 7 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 8 N -0.96 -57.21 13.06 21.65 0.28 -56.93 16 9 Si 0.97 45.46 29.55 68.60 2.03 47.48 16 10 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 11 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 12 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 13 C -0.11 -3.04 5.73 32.06 0.18 -2.85 16 14 C 0.09 1.86 4.58 86.93 0.40 2.26 16 15 N -0.60 -15.08 3.32 -811.35 -2.70 -17.77 16 16 C 0.55 14.17 6.16 87.66 0.54 14.72 16 17 O -0.56 -18.06 16.29 -3.04 -0.05 -18.11 16 18 C -0.17 -3.09 0.49 -52.40 -0.03 -3.11 16 19 C 0.47 9.01 2.62 71.98 0.19 9.20 16 20 F -0.19 -4.52 16.95 44.97 0.76 -3.75 16 21 F -0.17 -3.30 13.03 44.97 0.59 -2.72 16 22 F -0.17 -2.70 15.73 44.97 0.71 -1.99 16 23 C -0.11 -1.63 7.00 31.18 0.22 -1.41 16 24 C -0.13 -1.51 7.81 31.18 0.24 -1.27 16 25 C -0.12 -1.40 6.17 31.12 0.19 -1.21 16 26 C 0.12 3.47 6.05 86.73 0.52 4.00 16 27 H 0.07 1.72 7.41 -2.39 -0.02 1.71 16 28 H 0.05 1.78 6.69 -2.39 -0.02 1.77 16 29 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.02 0.81 8.10 -2.39 -0.02 0.79 16 31 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.38 19.11 6.21 -92.70 -0.58 18.53 16 33 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 34 H 0.07 2.07 8.02 -2.38 -0.02 2.05 16 35 H 0.08 2.42 8.04 -2.38 -0.02 2.40 16 36 H 0.09 1.91 5.64 -2.39 -0.01 1.90 16 37 H 0.10 1.73 4.92 -2.39 -0.01 1.72 16 38 H 0.12 1.30 7.22 -2.39 -0.02 1.29 16 39 H 0.08 1.52 7.35 -2.39 -0.02 1.50 16 40 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.09 1.18 5.98 -2.39 -0.01 1.16 16 43 H 0.13 1.00 7.78 -2.39 -0.02 0.98 16 44 H 0.07 1.98 7.82 -2.38 -0.02 1.96 16 45 H 0.07 1.98 7.84 -2.39 -0.02 1.96 16 Total: -1.00 -66.20 358.22 5.07 -61.13 By element: Atomic # 1 Polarization: 23.43 SS G_CDS: 0.45 Total: 23.88 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: 4.77 Total: 6.07 kcal Atomic # 7 Polarization: -107.81 SS G_CDS: -4.18 Total: -111.99 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: -0.05 Total: -18.11 kcal Atomic # 9 Polarization: -10.52 SS G_CDS: 2.06 Total: -8.46 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.48 kcal Total: -66.20 5.07 -61.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278512519.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.045 kcal (2) G-P(sol) polarization free energy of solvation -66.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds