Wall clock time and date at job start Tue Mar 31 2020 20:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.51886 * 121.18897 * 2 1 4 4 C 1.53901 * 107.27970 * 134.33894 * 3 2 1 5 5 H 1.08999 * 111.94287 * 182.18259 * 4 3 2 6 6 C 1.54456 * 108.45948 * 306.29011 * 4 3 2 7 7 C 1.54244 * 104.97326 * 90.44585 * 6 4 3 8 8 C 1.54872 * 104.93123 * 359.80693 * 7 6 4 9 9 H 1.09001 * 112.09164 * 145.70039 * 8 7 6 10 10 C 1.51536 * 121.03257 * 180.65211 * 2 1 3 11 11 N 1.48190 * 107.42607 * 58.77704 * 4 3 2 12 12 C 1.34775 * 127.84538 * 104.60129 * 11 4 3 13 13 O 1.21347 * 119.99613 * 0.02562 * 12 11 4 14 14 C 1.49450 * 120.00225 * 179.97438 * 12 11 4 15 15 O 1.21349 * 119.99701 * 0.02562 * 14 12 11 16 16 N 1.34775 * 120.00225 * 179.97438 * 14 12 11 17 17 C 1.47426 * 125.64489 * 0.04530 * 16 14 12 18 18 C 1.54914 * 104.82992 * 204.09098 * 17 16 14 19 19 C 1.55405 * 101.66697 * 323.07703 * 18 17 16 20 20 O 1.42895 * 110.69130 * 277.05126 * 19 18 17 21 21 C 1.50696 * 110.85075 * 153.69831 * 19 18 17 22 22 H 1.07999 * 120.00069 * 5.09169 * 21 19 18 23 23 C 1.37874 * 119.99892 * 185.08365 * 21 19 18 24 24 N 1.31514 * 120.00018 * 0.02562 * 23 21 19 25 25 Si 1.86800 * 120.00287 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47022 * 90.00155 * 25 23 21 27 27 H 1.48491 * 109.47398 * 210.00221 * 25 23 21 28 28 H 1.48500 * 109.46822 * 330.00457 * 25 23 21 29 29 C 1.47018 * 125.64993 * 180.02562 * 16 14 12 30 30 H 1.08004 * 119.99541 * 179.35222 * 1 2 3 31 31 H 1.07995 * 120.00425 * 359.35172 * 1 2 3 32 32 H 1.08996 * 109.45177 * 15.25018 * 3 2 1 33 33 H 1.09001 * 110.61734 * 254.08145 * 3 2 1 34 34 H 1.09006 * 110.34117 * 209.31601 * 6 4 3 35 35 H 1.09003 * 110.34370 * 331.57379 * 6 4 3 36 36 H 1.09000 * 110.34480 * 118.87687 * 7 6 4 37 37 H 1.09003 * 110.33848 * 241.13081 * 7 6 4 38 38 H 1.09001 * 109.80540 * 105.85083 * 10 2 1 39 39 H 1.09005 * 109.79993 * 344.97856 * 10 2 1 40 40 H 1.08999 * 110.36956 * 322.93474 * 17 16 14 41 41 H 1.09001 * 110.36709 * 85.14667 * 17 16 14 42 42 H 1.09000 * 111.00339 * 81.07133 * 18 17 16 43 43 H 1.09000 * 111.00165 * 204.88167 * 18 17 16 44 44 H 0.96706 * 113.99347 * 174.82523 * 20 19 18 45 45 H 0.97004 * 120.00211 * 180.02562 * 24 23 21 46 46 H 1.09002 * 109.88241 * 298.39592 * 29 16 14 47 47 H 1.09000 * 109.88049 * 59.40721 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0966 1.2993 0.0000 4 6 3.2120 1.1585 1.0510 5 1 3.8038 2.0694 1.1415 6 6 2.5691 0.7496 2.3946 7 6 2.5727 -0.7928 2.3850 8 6 3.2147 -1.1819 1.0304 9 1 3.8087 -2.0929 1.1050 10 6 2.0913 -1.2984 -0.0148 11 7 4.0411 -0.0074 0.6648 12 6 5.2662 -0.0011 0.1030 13 8 5.8154 1.0527 -0.1429 14 6 5.9487 -1.2918 -0.2160 15 8 5.3996 -2.3455 0.0304 16 7 7.1736 -1.2854 -0.7782 17 6 7.9517 -0.0834 -1.1290 18 6 8.9174 -0.5486 -2.2474 19 6 9.2742 -1.9860 -1.7767 20 8 10.3212 -1.9538 -0.8049 21 6 9.6576 -2.8541 -2.9474 22 1 9.7358 -2.4247 -3.9353 23 6 9.9089 -4.1963 -2.7572 24 7 9.8133 -4.7192 -1.5542 25 14 10.3849 -5.2723 -4.2081 26 1 11.8620 -5.2718 -4.3611 27 1 9.9123 -6.6599 -3.9714 28 1 9.7590 -4.7403 -5.4452 29 6 7.9552 -2.4760 -1.1429 30 1 -0.5399 -0.9353 -0.0106 31 1 -0.5400 0.9352 0.0106 32 1 1.4363 2.1233 0.2703 33 1 2.5347 1.4828 -0.9811 34 1 3.1627 1.1246 3.2284 35 1 1.5478 1.1257 2.4560 36 1 3.1679 -1.1755 3.2141 37 1 1.5532 -1.1744 2.4416 38 1 2.5217 -1.4592 -1.0032 39 1 1.4328 -2.1284 0.2416 40 1 7.2917 0.7010 -1.4996 41 1 8.5127 0.2711 -0.2643 42 1 8.4143 -0.5697 -3.2142 43 1 9.8049 0.0831 -2.2849 44 1 10.5276 -2.8168 -0.4204 45 1 9.9904 -5.6635 -1.4203 46 1 8.1691 -3.0663 -0.2518 47 1 7.3996 -3.0783 -1.8617 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330494579.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:36 Heat of formation + Delta-G solvation = -80.752747 kcal Electronic energy + Delta-G solvation = -30298.734996 eV Core-core repulsion = 26254.205471 eV Total energy + Delta-G solvation = -4044.529525 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.15385 -39.56761 -37.90157 -37.23630 -34.54486 -34.10165 -32.26270 -31.86518 -31.50694 -30.15392 -27.96086 -27.76491 -25.92261 -24.71685 -24.13113 -22.48401 -21.36292 -20.61456 -19.75399 -19.44938 -17.91384 -17.19236 -16.80474 -16.52695 -16.04940 -15.64059 -15.24812 -15.10228 -14.63659 -14.54106 -14.34539 -13.91788 -13.78537 -13.45082 -13.10709 -12.99576 -12.95240 -12.86899 -12.66652 -12.37774 -12.20154 -11.94731 -11.74145 -11.55087 -11.45443 -11.22409 -11.07957 -10.94656 -10.79345 -10.63320 -10.61766 -10.49374 -10.41281 -10.16002 -9.47536 -9.32942 -9.01999 -8.71479 -8.66108 -8.35678 -8.01881 -6.31523 -4.40000 1.75560 2.07361 2.46858 3.19942 3.27474 3.30272 3.57032 3.70732 4.24149 4.28262 4.35203 4.59227 4.66708 4.76328 4.82480 4.85679 4.96877 5.06676 5.19502 5.30353 5.49378 5.52912 5.55399 5.63573 5.65781 5.72805 5.75804 5.80446 5.86411 5.89154 5.93439 5.97113 6.03944 6.19259 6.30422 6.43072 6.50585 6.65013 6.75109 6.81665 6.83946 7.18321 7.29082 7.37735 7.69839 7.78947 8.00624 8.03592 8.44278 8.64134 9.26555 9.35328 10.76334 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020538 B = 0.003080 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.971726 B = 9089.780918 C = 9569.567540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 C -0.095 4.095 4 C 0.134 3.866 5 H 0.102 0.898 6 C -0.127 4.127 7 C -0.129 4.129 8 C 0.120 3.880 9 H 0.136 0.864 10 C -0.095 4.095 11 N -0.592 5.592 12 C 0.531 3.469 13 O -0.520 6.520 14 C 0.511 3.489 15 O -0.534 6.534 16 N -0.574 5.574 17 C 0.099 3.901 18 C -0.121 4.121 19 C 0.248 3.752 20 O -0.583 6.583 21 C -0.536 4.536 22 H 0.068 0.932 23 C 0.070 3.930 24 N -0.895 5.895 25 Si 0.904 3.096 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.272 1.272 29 C 0.102 3.898 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.068 0.932 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.382 0.618 45 H 0.270 0.730 46 H 0.071 0.929 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.492 9.185 6.439 19.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.110 4.110 3 C -0.133 4.133 4 C 0.031 3.969 5 H 0.120 0.880 6 C -0.165 4.165 7 C -0.168 4.168 8 C 0.017 3.983 9 H 0.153 0.847 10 C -0.133 4.133 11 N -0.327 5.327 12 C 0.315 3.685 13 O -0.396 6.396 14 C 0.293 3.707 15 O -0.413 6.413 16 N -0.306 5.306 17 C -0.024 4.024 18 C -0.159 4.159 19 C 0.208 3.792 20 O -0.391 6.391 21 C -0.575 4.575 22 H 0.086 0.914 23 C -0.133 4.133 24 N -0.534 5.534 25 Si 0.732 3.268 26 H -0.204 1.204 27 H -0.210 1.210 28 H -0.197 1.197 29 C -0.019 4.019 30 H 0.116 0.884 31 H 0.115 0.885 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.104 0.896 41 H 0.086 0.914 42 H 0.095 0.905 43 H 0.097 0.903 44 H 0.232 0.768 45 H 0.080 0.920 46 H 0.089 0.911 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -16.391 9.656 6.360 20.059 hybrid contribution 0.129 -1.297 -0.599 1.434 sum -16.262 8.359 5.761 19.171 Atomic orbital electron populations 1.23538 0.94674 1.01783 1.03737 1.22041 0.94900 0.95612 0.98462 1.21477 0.96633 0.95305 0.99924 1.22259 0.90583 0.90360 0.93684 0.87951 1.22516 1.01254 0.96293 0.96432 1.22643 1.01459 0.95521 0.97136 1.22908 0.91098 0.91266 0.92993 0.84658 1.21391 0.96717 0.94922 1.00250 1.48920 1.15149 1.09158 1.59442 1.20080 0.80298 0.90168 0.77937 1.90697 1.64003 1.33083 1.51786 1.19479 0.81933 0.88776 0.80522 1.90600 1.64340 1.32517 1.53893 1.48704 1.14650 1.11447 1.55830 1.22640 0.93923 0.87250 0.98549 1.22862 0.98145 0.97868 0.96995 1.19564 0.82654 0.90447 0.86567 1.86136 1.56753 1.36786 1.59461 1.21497 1.48105 0.93436 0.94422 0.91410 1.25079 0.93803 0.98001 0.96412 1.69696 1.48502 1.14121 1.21040 0.86387 0.78868 0.79343 0.82243 1.20354 1.21001 1.19685 1.23219 0.93382 0.85084 1.00235 0.88362 0.88539 0.90135 0.90226 0.91000 0.90128 0.90901 0.90195 0.90277 0.89969 0.89563 0.91383 0.90488 0.90322 0.76830 0.91974 0.91079 0.90916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.62 14.01 29.01 0.41 -1.22 16 2 C -0.11 -1.06 4.10 -100.07 -0.41 -1.47 16 3 C -0.10 -0.92 5.69 -26.83 -0.15 -1.08 16 4 C 0.13 1.47 4.01 -65.77 -0.26 1.20 16 5 H 0.10 1.15 7.92 -51.93 -0.41 0.74 16 6 C -0.13 -1.11 6.09 -25.32 -0.15 -1.26 16 7 C -0.13 -1.23 6.11 -25.09 -0.15 -1.38 16 8 C 0.12 1.49 3.66 -65.55 -0.24 1.25 16 9 H 0.14 2.01 5.46 -51.93 -0.28 1.72 16 10 C -0.09 -1.05 5.61 -27.01 -0.15 -1.20 16 11 N -0.59 -8.36 2.72 -153.56 -0.42 -8.78 16 12 C 0.53 9.31 7.95 -11.59 -0.09 9.22 16 13 O -0.52 -9.70 14.07 5.50 0.08 -9.62 16 14 C 0.51 10.25 7.89 -11.59 -0.09 10.16 16 15 O -0.53 -11.26 14.09 5.50 0.08 -11.18 16 16 N -0.57 -12.21 3.33 -171.02 -0.57 -12.78 16 17 C 0.10 1.93 6.06 -2.53 -0.02 1.92 16 18 C -0.12 -2.49 6.24 -24.44 -0.15 -2.64 16 19 C 0.25 5.99 0.86 -89.80 -0.08 5.92 16 20 O -0.58 -14.60 13.08 -35.23 -0.46 -15.06 16 21 C -0.54 -13.90 8.13 -34.44 -0.28 -14.18 16 22 H 0.07 1.73 7.78 -52.49 -0.41 1.32 16 23 C 0.07 1.81 5.28 -17.82 -0.09 1.72 16 24 N -0.89 -23.43 10.98 55.43 0.61 -22.82 16 25 Si 0.90 20.24 29.54 -169.99 -5.02 15.22 16 26 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 28 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 29 C 0.10 2.43 5.23 -3.07 -0.02 2.41 16 30 H 0.10 0.73 7.97 -52.48 -0.42 0.31 16 31 H 0.10 0.67 7.97 -52.49 -0.42 0.25 16 32 H 0.08 0.61 7.96 -51.93 -0.41 0.19 16 33 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.58 7.72 -51.93 -0.40 0.18 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 0.64 7.72 -51.93 -0.40 0.24 16 38 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.08 0.77 7.96 -51.93 -0.41 0.36 16 40 H 0.09 1.60 6.16 -51.93 -0.32 1.28 16 41 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.08 1.53 8.04 -51.93 -0.42 1.11 16 43 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 44 H 0.38 9.69 7.47 45.56 0.34 10.03 16 45 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 46 H 0.07 1.82 7.92 -51.93 -0.41 1.41 16 47 H 0.07 1.86 7.81 -51.93 -0.41 1.46 16 LS Contribution 369.08 15.07 5.56 5.56 Total: -1.00 -28.35 369.08 -8.53 -36.89 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: -6.45 Total: 13.20 kcal Atomic # 6 Polarization: 11.30 SS G_CDS: -1.94 Total: 9.36 kcal Atomic # 7 Polarization: -43.99 SS G_CDS: -0.38 Total: -44.37 kcal Atomic # 8 Polarization: -35.56 SS G_CDS: -0.31 Total: -35.87 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -28.35 -8.53 -36.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330494579.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.866 kcal (2) G-P(sol) polarization free energy of solvation -28.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds