Wall clock time and date at job start Tue Mar 31 2020 20:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.51886 * 121.18897 * 2 1 4 4 C 1.53901 * 107.27970 * 134.33894 * 3 2 1 5 5 H 1.08999 * 111.94287 * 182.18259 * 4 3 2 6 6 C 1.54456 * 108.45948 * 306.29011 * 4 3 2 7 7 C 1.54244 * 104.97326 * 90.44585 * 6 4 3 8 8 C 1.54872 * 104.93123 * 359.80693 * 7 6 4 9 9 H 1.09001 * 112.09164 * 145.70039 * 8 7 6 10 10 C 1.51536 * 121.03257 * 180.65211 * 2 1 3 11 11 N 1.48190 * 107.42607 * 58.77704 * 4 3 2 12 12 C 1.34775 * 127.84538 * 104.60129 * 11 4 3 13 13 O 1.21347 * 119.99613 * 0.02562 * 12 11 4 14 14 C 1.49450 * 120.00225 * 179.97438 * 12 11 4 15 15 O 1.21349 * 119.99701 * 0.02562 * 14 12 11 16 16 N 1.34775 * 120.00225 * 179.97438 * 14 12 11 17 17 C 1.47426 * 125.64489 * 0.04530 * 16 14 12 18 18 C 1.54914 * 104.82992 * 204.09098 * 17 16 14 19 19 C 1.55405 * 101.66697 * 323.07703 * 18 17 16 20 20 O 1.42895 * 110.69130 * 277.05126 * 19 18 17 21 21 C 1.50696 * 110.85075 * 153.69831 * 19 18 17 22 22 H 1.07999 * 120.00069 * 5.09169 * 21 19 18 23 23 C 1.37874 * 119.99892 * 185.08365 * 21 19 18 24 24 N 1.31514 * 120.00018 * 0.02562 * 23 21 19 25 25 Si 1.86800 * 120.00287 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47022 * 90.00155 * 25 23 21 27 27 H 1.48491 * 109.47398 * 210.00221 * 25 23 21 28 28 H 1.48500 * 109.46822 * 330.00457 * 25 23 21 29 29 C 1.47018 * 125.64993 * 180.02562 * 16 14 12 30 30 H 1.08004 * 119.99541 * 179.35222 * 1 2 3 31 31 H 1.07995 * 120.00425 * 359.35172 * 1 2 3 32 32 H 1.08996 * 109.45177 * 15.25018 * 3 2 1 33 33 H 1.09001 * 110.61734 * 254.08145 * 3 2 1 34 34 H 1.09006 * 110.34117 * 209.31601 * 6 4 3 35 35 H 1.09003 * 110.34370 * 331.57379 * 6 4 3 36 36 H 1.09000 * 110.34480 * 118.87687 * 7 6 4 37 37 H 1.09003 * 110.33848 * 241.13081 * 7 6 4 38 38 H 1.09001 * 109.80540 * 105.85083 * 10 2 1 39 39 H 1.09005 * 109.79993 * 344.97856 * 10 2 1 40 40 H 1.08999 * 110.36956 * 322.93474 * 17 16 14 41 41 H 1.09001 * 110.36709 * 85.14667 * 17 16 14 42 42 H 1.09000 * 111.00339 * 81.07133 * 18 17 16 43 43 H 1.09000 * 111.00165 * 204.88167 * 18 17 16 44 44 H 0.96706 * 113.99347 * 174.82523 * 20 19 18 45 45 H 0.97004 * 120.00211 * 180.02562 * 24 23 21 46 46 H 1.09002 * 109.88241 * 298.39592 * 29 16 14 47 47 H 1.09000 * 109.88049 * 59.40721 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0966 1.2993 0.0000 4 6 3.2120 1.1585 1.0510 5 1 3.8038 2.0694 1.1415 6 6 2.5691 0.7496 2.3946 7 6 2.5727 -0.7928 2.3850 8 6 3.2147 -1.1819 1.0304 9 1 3.8087 -2.0929 1.1050 10 6 2.0913 -1.2984 -0.0148 11 7 4.0411 -0.0074 0.6648 12 6 5.2662 -0.0011 0.1030 13 8 5.8154 1.0527 -0.1429 14 6 5.9487 -1.2918 -0.2160 15 8 5.3996 -2.3455 0.0304 16 7 7.1736 -1.2854 -0.7782 17 6 7.9517 -0.0834 -1.1290 18 6 8.9174 -0.5486 -2.2474 19 6 9.2742 -1.9860 -1.7767 20 8 10.3212 -1.9538 -0.8049 21 6 9.6576 -2.8541 -2.9474 22 1 9.7358 -2.4247 -3.9353 23 6 9.9089 -4.1963 -2.7572 24 7 9.8133 -4.7192 -1.5542 25 14 10.3849 -5.2723 -4.2081 26 1 11.8620 -5.2718 -4.3611 27 1 9.9123 -6.6599 -3.9714 28 1 9.7590 -4.7403 -5.4452 29 6 7.9552 -2.4760 -1.1429 30 1 -0.5399 -0.9353 -0.0106 31 1 -0.5400 0.9352 0.0106 32 1 1.4363 2.1233 0.2703 33 1 2.5347 1.4828 -0.9811 34 1 3.1627 1.1246 3.2284 35 1 1.5478 1.1257 2.4560 36 1 3.1679 -1.1755 3.2141 37 1 1.5532 -1.1744 2.4416 38 1 2.5217 -1.4592 -1.0032 39 1 1.4328 -2.1284 0.2416 40 1 7.2917 0.7010 -1.4996 41 1 8.5127 0.2711 -0.2643 42 1 8.4143 -0.5697 -3.2142 43 1 9.8049 0.0831 -2.2849 44 1 10.5276 -2.8168 -0.4204 45 1 9.9904 -5.6635 -1.4203 46 1 8.1691 -3.0663 -0.2518 47 1 7.3996 -3.0783 -1.8617 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330494579.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:35 Heat of formation + Delta-G solvation = -99.021203 kcal Electronic energy + Delta-G solvation = -30299.527176 eV Core-core repulsion = 26254.205471 eV Total energy + Delta-G solvation = -4045.321705 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.30685 -40.99858 -39.37428 -38.92135 -36.22422 -35.10018 -34.26720 -32.76004 -32.47743 -31.91024 -29.76908 -28.64310 -27.65265 -25.77223 -25.44619 -23.98577 -22.52206 -21.57871 -21.42629 -20.76928 -19.17377 -19.09319 -18.09862 -17.93950 -17.29417 -17.18296 -16.81523 -16.46804 -16.26813 -15.70539 -15.42007 -14.96569 -14.91718 -14.84127 -14.76038 -14.57657 -14.35210 -14.03999 -13.99074 -13.56541 -13.50013 -13.43373 -13.01938 -12.87389 -12.75520 -12.62880 -12.45221 -12.39137 -12.28183 -12.22233 -12.11960 -11.84321 -11.41133 -11.35612 -11.17681 -10.72165 -10.49421 -10.33288 -10.27858 -9.82523 -9.61190 -8.28711 -6.44663 0.28039 1.11856 1.37448 1.41813 1.43538 1.53070 2.06316 2.29122 2.38803 2.97321 3.06173 3.46188 3.60988 3.75350 3.88196 3.94835 4.00006 4.01501 4.11624 4.12955 4.24873 4.30180 4.36644 4.50100 4.57971 4.66116 4.73097 4.75511 4.87016 4.92934 4.93921 4.96920 5.02451 5.04511 5.07441 5.08091 5.14673 5.17275 5.27500 5.35984 5.42778 5.70181 5.73623 5.94850 6.00589 6.14348 6.27011 6.50920 6.63730 6.87630 7.24468 7.32480 8.77791 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020538 B = 0.003080 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.971726 B = 9089.780918 C = 9569.567540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.132 4.132 3 C -0.090 4.090 4 C 0.126 3.874 5 H 0.099 0.901 6 C -0.117 4.117 7 C -0.121 4.121 8 C 0.109 3.891 9 H 0.105 0.895 10 C -0.091 4.091 11 N -0.586 5.586 12 C 0.531 3.469 13 O -0.537 6.537 14 C 0.504 3.496 15 O -0.550 6.550 16 N -0.585 5.585 17 C 0.109 3.891 18 C -0.114 4.114 19 C 0.235 3.765 20 O -0.586 6.586 21 C -0.558 4.558 22 H 0.067 0.933 23 C 0.028 3.972 24 N -0.914 5.914 25 Si 0.965 3.035 26 H -0.273 1.273 27 H -0.283 1.283 28 H -0.268 1.268 29 C 0.121 3.879 30 H 0.107 0.893 31 H 0.116 0.884 32 H 0.111 0.889 33 H 0.058 0.942 34 H 0.077 0.923 35 H 0.109 0.891 36 H 0.070 0.930 37 H 0.102 0.898 38 H 0.049 0.951 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.068 0.932 42 H 0.084 0.916 43 H 0.091 0.909 44 H 0.376 0.624 45 H 0.271 0.729 46 H 0.044 0.956 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.033 10.613 6.758 22.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.132 4.132 3 C -0.127 4.127 4 C 0.024 3.976 5 H 0.117 0.883 6 C -0.155 4.155 7 C -0.159 4.159 8 C 0.006 3.994 9 H 0.122 0.878 10 C -0.128 4.128 11 N -0.319 5.319 12 C 0.314 3.686 13 O -0.415 6.415 14 C 0.287 3.713 15 O -0.430 6.430 16 N -0.317 5.317 17 C -0.012 4.012 18 C -0.152 4.152 19 C 0.195 3.805 20 O -0.394 6.394 21 C -0.596 4.596 22 H 0.086 0.914 23 C -0.173 4.173 24 N -0.553 5.553 25 Si 0.790 3.210 26 H -0.199 1.199 27 H -0.209 1.209 28 H -0.193 1.193 29 C -0.001 4.001 30 H 0.125 0.875 31 H 0.134 0.866 32 H 0.129 0.871 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.127 0.873 36 H 0.089 0.911 37 H 0.121 0.879 38 H 0.067 0.933 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.086 0.914 42 H 0.103 0.897 43 H 0.110 0.890 44 H 0.226 0.774 45 H 0.081 0.919 46 H 0.062 0.938 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -18.982 11.104 6.701 22.989 hybrid contribution 0.788 -1.789 -0.655 2.061 sum -18.194 9.315 6.046 21.315 Atomic orbital electron populations 1.23771 0.93876 1.03172 1.00100 1.21872 0.95365 0.94420 1.01550 1.21446 0.96411 0.96524 0.98337 1.22615 0.90495 0.88870 0.95618 0.88308 1.22522 1.02684 0.95346 0.94904 1.22616 1.02269 0.96323 0.94717 1.23012 0.91079 0.89644 0.95640 0.87774 1.21316 0.96517 0.96948 0.98060 1.49055 1.14049 1.11455 1.57334 1.19453 0.81536 0.88527 0.79072 1.90671 1.64827 1.32716 1.53268 1.20167 0.81492 0.90018 0.79580 1.90597 1.64663 1.33659 1.54095 1.48741 1.15298 1.10988 1.56658 1.22618 0.93702 0.86773 0.98156 1.22859 0.98938 0.95805 0.97577 1.19745 0.82188 0.92522 0.86080 1.86125 1.57188 1.36404 1.59710 1.21776 1.48655 0.94218 0.94932 0.91433 1.25801 0.93687 0.99120 0.98714 1.69794 1.48716 1.14310 1.22477 0.85446 0.78581 0.77556 0.79424 1.19868 1.20887 1.19255 1.22728 0.93591 0.85630 0.98153 0.87476 0.86573 0.87051 0.92301 0.90470 0.87311 0.91123 0.87914 0.93288 0.88294 0.88122 0.91414 0.89725 0.89010 0.77446 0.91935 0.93788 0.93578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.05 14.01 67.78 0.95 -1.10 16 2 C -0.13 -2.17 4.10 -15.85 -0.06 -2.24 16 3 C -0.09 -1.51 5.69 30.53 0.17 -1.33 16 4 C 0.13 2.52 4.01 45.47 0.18 2.70 16 5 H 0.10 2.07 7.92 -2.39 -0.02 2.05 16 6 C -0.12 -1.66 6.09 31.51 0.19 -1.47 16 7 C -0.12 -2.03 6.11 31.66 0.19 -1.83 16 8 C 0.11 2.68 3.66 45.61 0.17 2.84 16 9 H 0.10 3.24 5.46 -2.39 -0.01 3.22 16 10 C -0.09 -1.93 5.61 30.42 0.17 -1.76 16 11 N -0.59 -16.46 2.72 -758.10 -2.06 -18.52 16 12 C 0.53 19.01 7.95 87.27 0.69 19.70 16 13 O -0.54 -20.11 14.07 -3.24 -0.05 -20.16 16 14 C 0.50 21.11 7.89 87.27 0.69 21.79 16 15 O -0.55 -24.52 14.09 -3.24 -0.05 -24.56 16 16 N -0.58 -25.80 3.33 -813.36 -2.71 -28.50 16 17 C 0.11 4.32 6.06 86.86 0.53 4.84 16 18 C -0.11 -4.72 6.24 32.08 0.20 -4.52 16 19 C 0.23 11.65 0.86 -10.26 -0.01 11.64 16 20 O -0.59 -30.16 13.08 -148.98 -1.95 -32.11 16 21 C -0.56 -29.44 8.13 25.60 0.21 -29.23 16 22 H 0.07 3.48 7.78 -2.91 -0.02 3.46 16 23 C 0.03 1.46 5.28 84.65 0.45 1.91 16 24 N -0.91 -49.19 10.98 21.45 0.24 -48.95 16 25 Si 0.96 41.86 29.54 68.60 2.03 43.89 16 26 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 27 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 28 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 29 C 0.12 6.08 5.23 86.73 0.45 6.53 16 30 H 0.11 1.12 7.97 -2.91 -0.02 1.10 16 31 H 0.12 0.99 7.97 -2.91 -0.02 0.96 16 32 H 0.11 1.20 7.96 -2.39 -0.02 1.18 16 33 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 35 H 0.11 1.01 7.72 -2.39 -0.02 0.99 16 36 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.10 1.28 7.72 -2.39 -0.02 1.26 16 38 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.10 1.71 7.96 -2.38 -0.02 1.69 16 40 H 0.10 3.72 6.16 -2.39 -0.01 3.71 16 41 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 42 H 0.08 3.34 8.04 -2.39 -0.02 3.33 16 43 H 0.09 3.53 8.14 -2.39 -0.02 3.51 16 44 H 0.38 19.87 7.47 -74.05 -0.55 19.31 16 45 H 0.27 13.95 8.31 -92.71 -0.77 13.18 16 46 H 0.04 2.40 7.92 -2.39 -0.02 2.38 16 47 H 0.05 2.50 7.81 -2.39 -0.02 2.48 16 Total: -1.00 -63.29 369.08 1.06 -62.23 By element: Atomic # 1 Polarization: 37.78 SS G_CDS: 0.43 Total: 38.22 kcal Atomic # 6 Polarization: 23.30 SS G_CDS: 5.17 Total: 28.47 kcal Atomic # 7 Polarization: -91.44 SS G_CDS: -4.53 Total: -95.98 kcal Atomic # 8 Polarization: -74.79 SS G_CDS: -2.04 Total: -76.83 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Total: -63.29 1.06 -62.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330494579.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.789 kcal (2) G-P(sol) polarization free energy of solvation -63.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds