Wall clock time and date at job start Tue Mar 31 2020 17:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34521 * 125.78871 * 2 1 4 4 C 1.41384 * 106.83805 * 179.75467 * 3 2 1 5 5 C 1.34513 * 106.84046 * 0.36332 * 4 3 2 6 6 C 1.50699 * 125.78905 * 179.88994 * 5 4 3 7 7 C 1.52998 * 109.47049 * 89.72128 * 6 5 4 8 8 N 1.46502 * 109.47360 * 180.02562 * 7 6 5 9 9 C 1.34782 * 120.00166 * 180.02562 * 8 7 6 10 10 O 1.21350 * 119.99528 * 359.97438 * 9 8 7 11 11 C 1.49446 * 120.00084 * 179.97438 * 9 8 7 12 12 O 1.21356 * 119.99803 * 353.37756 * 11 9 8 13 13 N 1.34768 * 120.00057 * 173.37736 * 11 9 8 14 14 C 1.46923 * 120.63140 * 353.06161 * 13 11 9 15 15 C 1.53197 * 108.77603 * 126.41596 * 14 13 11 16 16 C 1.53036 * 109.34037 * 54.62030 * 15 14 13 17 17 C 1.53043 * 109.53781 * 298.68543 * 16 15 14 18 18 H 1.09000 * 109.49772 * 301.34791 * 17 16 15 19 19 C 1.50699 * 109.49861 * 181.28187 * 17 16 15 20 20 H 1.08009 * 119.99826 * 0.06421 * 19 17 16 21 21 C 1.37874 * 120.00391 * 180.34183 * 19 17 16 22 22 N 1.31511 * 119.99935 * 359.72505 * 21 19 17 23 23 Si 1.86803 * 120.00371 * 179.72468 * 21 19 17 24 24 H 1.48501 * 109.46889 * 59.99781 * 23 21 19 25 25 H 1.48493 * 109.47092 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.46907 * 300.00065 * 23 21 19 27 27 C 1.46927 * 120.63303 * 173.08900 * 13 11 9 28 28 O 1.34303 * 125.78959 * 179.97438 * 2 1 3 29 29 H 1.08994 * 109.47302 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47119 * 300.00073 * 1 2 3 31 31 H 1.08999 * 109.47237 * 59.99876 * 1 2 3 32 32 H 1.08001 * 126.57975 * 359.97438 * 3 2 1 33 33 H 1.08000 * 126.57824 * 180.24315 * 4 3 2 34 34 H 1.09004 * 109.47291 * 329.72405 * 6 5 4 35 35 H 1.08999 * 109.47577 * 209.72333 * 6 5 4 36 36 H 1.09007 * 109.47352 * 60.00056 * 7 6 5 37 37 H 1.09010 * 109.47442 * 300.00142 * 7 6 5 38 38 H 0.96996 * 120.00059 * 359.97438 * 8 7 6 39 39 H 1.08998 * 109.59171 * 246.19792 * 14 13 11 40 40 H 1.09003 * 109.58922 * 6.48999 * 14 13 11 41 41 H 1.08995 * 109.50150 * 174.58993 * 15 14 13 42 42 H 1.09009 * 109.49617 * 294.68452 * 15 14 13 43 43 H 1.08997 * 109.49188 * 178.64856 * 16 15 14 44 44 H 1.09001 * 109.43006 * 58.68768 * 16 15 14 45 45 H 0.97000 * 120.00590 * 180.02562 * 22 21 19 46 46 H 1.09003 * 109.59192 * 113.79627 * 27 13 11 47 47 H 1.08998 * 109.70190 * 353.44355 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0912 0.0000 4 6 3.6308 0.6321 0.0058 5 6 3.5814 -0.7121 0.0008 6 6 4.7705 -1.6378 0.0018 7 6 5.1720 -1.9507 1.4446 8 7 6.3285 -2.8501 1.4457 9 6 6.8592 -3.2641 2.6134 10 8 6.3795 -2.8913 3.6639 11 6 8.0386 -4.1820 2.6144 12 8 8.4438 -4.6503 1.5708 13 7 8.6520 -4.4897 3.7743 14 6 8.2721 -3.8162 5.0236 15 6 7.9335 -4.8792 6.0736 16 6 9.1112 -5.8463 6.2139 17 6 9.3588 -6.5486 4.8769 18 1 8.4586 -7.0840 4.5750 19 6 10.4983 -7.5237 5.0244 20 1 10.9959 -7.6327 5.9768 21 6 10.9095 -8.2724 3.9421 22 7 10.3038 -8.1396 2.7824 23 14 12.3271 -9.4755 4.1230 24 1 11.9869 -10.4900 5.1527 25 1 12.5710 -10.1520 2.8238 26 1 13.5498 -8.7411 4.5366 27 6 9.7137 -5.5046 3.8135 28 8 2.2924 -1.0894 0.0005 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.9665 2.1205 -0.0004 33 1 4.5212 1.2433 0.0110 34 1 5.6043 -1.1589 -0.5116 35 1 4.5110 -2.5634 -0.5119 36 1 4.3383 -2.4297 1.9581 37 1 5.4317 -1.0250 1.9585 38 1 6.7117 -3.1483 0.6060 39 1 9.1031 -3.2056 5.3769 40 1 7.4023 -3.1832 4.8478 41 1 7.7431 -4.3962 7.0320 42 1 7.0463 -5.4299 5.7606 43 1 8.8824 -6.5896 6.9776 44 1 10.0036 -5.2913 6.5033 45 1 10.5927 -8.6666 2.0211 46 1 10.6622 -5.0316 4.0680 47 1 9.7960 -5.9879 2.8400 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333983057.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:23 Heat of formation + Delta-G solvation = -49.986804 kcal Electronic energy + Delta-G solvation = -28290.540002 eV Core-core repulsion = 24247.344589 eV Total energy + Delta-G solvation = -4043.195414 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 3.56 seconds Orbital eigenvalues (eV) -42.89962 -40.51715 -38.37241 -36.88361 -35.90687 -33.48899 -33.38407 -32.94711 -31.72340 -30.60631 -29.73505 -26.88378 -25.51244 -24.96295 -23.55639 -22.14548 -21.95618 -21.78695 -20.58307 -20.10732 -18.80037 -17.39109 -17.02959 -16.47410 -16.42023 -16.08470 -15.91280 -15.41530 -14.86788 -14.72325 -14.54906 -14.40288 -13.83616 -13.72222 -13.44809 -13.42304 -13.25079 -13.11020 -12.84381 -12.75949 -12.58476 -12.41169 -12.24843 -12.08809 -11.80636 -11.62630 -11.38831 -10.96498 -10.71652 -10.46947 -10.27519 -10.17186 -10.05930 -9.88673 -9.32592 -9.22055 -9.11207 -8.62093 -8.51474 -8.41227 -7.82860 -6.02042 -4.10235 1.35913 1.77291 2.26571 2.45795 2.80057 3.31572 3.37082 3.38783 3.63193 3.92601 4.32155 4.41680 4.51681 4.53002 4.68253 4.73714 4.74256 4.99633 5.05036 5.08863 5.28406 5.31063 5.41147 5.53586 5.57069 5.66253 5.69937 5.71075 5.85273 5.87772 6.05669 6.22920 6.26069 6.39845 6.59981 6.61639 6.75100 6.86829 6.86942 6.99833 7.04008 7.17702 7.20956 7.59031 7.82914 7.95189 7.97767 8.15933 8.35101 8.56819 8.93570 9.55196 11.03577 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.024405 B = 0.002061 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.013452 B =13580.010273 C =14146.937383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.014 4.014 3 C -0.213 4.213 4 C -0.199 4.199 5 C -0.011 4.011 6 C -0.052 4.052 7 C 0.121 3.879 8 N -0.705 5.705 9 C 0.513 3.487 10 O -0.512 6.512 11 C 0.495 3.505 12 O -0.525 6.525 13 N -0.566 5.566 14 C 0.050 3.950 15 C -0.128 4.128 16 C -0.113 4.113 17 C 0.040 3.960 18 H 0.029 0.971 19 C -0.519 4.519 20 H 0.059 0.941 21 C 0.062 3.938 22 N -0.883 5.883 23 Si 0.895 3.105 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.277 1.277 27 C 0.108 3.892 28 O -0.172 6.172 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.147 0.853 33 H 0.149 0.851 34 H 0.104 0.896 35 H 0.092 0.908 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.414 0.586 39 H 0.055 0.945 40 H 0.143 0.857 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.051 0.949 44 H 0.049 0.951 45 H 0.264 0.736 46 H 0.048 0.952 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.963 18.331 -5.894 25.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.064 4.064 3 C -0.232 4.232 4 C -0.219 4.219 5 C -0.061 4.061 6 C -0.089 4.089 7 C -0.002 4.002 8 N -0.359 5.359 9 C 0.296 3.704 10 O -0.390 6.390 11 C 0.276 3.724 12 O -0.402 6.402 13 N -0.298 5.298 14 C -0.072 4.072 15 C -0.166 4.166 16 C -0.151 4.151 17 C 0.021 3.979 18 H 0.047 0.953 19 C -0.558 4.558 20 H 0.077 0.923 21 C -0.141 4.141 22 N -0.521 5.521 23 Si 0.722 3.278 24 H -0.203 1.203 25 H -0.213 1.213 26 H -0.202 1.202 27 C -0.012 4.012 28 O -0.069 6.069 29 H 0.095 0.905 30 H 0.104 0.896 31 H 0.103 0.897 32 H 0.165 0.835 33 H 0.167 0.833 34 H 0.122 0.878 35 H 0.111 0.889 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.251 0.749 39 H 0.073 0.927 40 H 0.160 0.840 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.074 0.926 46 H 0.066 0.934 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -16.166 17.965 -5.879 24.872 hybrid contribution 1.093 -0.600 -0.241 1.270 sum -15.073 17.365 -6.120 23.795 Atomic orbital electron populations 1.20317 0.85103 1.04132 1.03564 1.22472 0.94051 0.84140 1.05725 1.21561 0.92700 0.99449 1.09538 1.21611 0.98355 0.93774 1.08113 1.21971 0.82860 0.94228 1.07041 1.20270 0.92207 0.99008 0.97421 1.21400 0.88517 0.94405 0.95911 1.45770 1.32192 1.48532 1.09445 1.20798 0.84888 0.80974 0.83746 1.90313 1.61887 1.57005 1.29760 1.19715 0.84142 0.83269 0.85273 1.90759 1.64956 1.53671 1.30825 1.48442 1.36343 1.38524 1.06481 1.23081 1.03755 0.96236 0.84124 1.21855 0.99638 0.97511 0.97568 1.21665 0.96036 0.97270 1.00115 1.18974 0.97523 0.92151 0.89223 0.95263 1.21060 1.16862 1.21354 0.96487 0.92289 1.25062 0.96760 0.96898 0.95372 1.69856 1.40725 1.40639 1.00866 0.86617 0.82656 0.81241 0.77258 1.20263 1.21255 1.20224 1.22493 0.85699 0.86688 1.06280 1.83978 1.16312 1.35150 1.71467 0.90517 0.89608 0.89692 0.83478 0.83300 0.87793 0.88920 0.90558 0.90407 0.74916 0.92708 0.84034 0.92269 0.92341 0.93065 0.93249 0.92565 0.93367 0.85858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.38 10.42 36.00 0.38 -0.01 16 2 C -0.01 -0.12 7.32 -35.62 -0.26 -0.38 16 3 C -0.21 -1.81 10.81 -39.70 -0.43 -2.24 16 4 C -0.20 -1.77 10.81 -39.70 -0.43 -2.20 16 5 C -0.01 -0.10 6.57 -35.63 -0.23 -0.33 16 6 C -0.05 -0.40 5.86 -27.88 -0.16 -0.56 16 7 C 0.12 1.21 5.66 -4.04 -0.02 1.19 16 8 N -0.71 -8.71 5.55 -60.72 -0.34 -9.05 16 9 C 0.51 8.38 7.78 -11.58 -0.09 8.29 16 10 O -0.51 -8.80 13.10 5.50 0.07 -8.73 16 11 C 0.50 9.95 7.74 -11.59 -0.09 9.86 16 12 O -0.52 -11.80 15.95 5.49 0.09 -11.72 16 13 N -0.57 -11.88 2.97 -173.27 -0.51 -12.40 16 14 C 0.05 0.89 6.27 -3.71 -0.02 0.87 16 15 C -0.13 -2.30 6.08 -26.61 -0.16 -2.46 16 16 C -0.11 -2.35 5.11 -26.69 -0.14 -2.49 16 17 C 0.04 1.01 2.25 -91.65 -0.21 0.81 16 18 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 19 C -0.52 -14.10 8.57 -34.44 -0.30 -14.40 16 20 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 21 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 22 N -0.88 -25.49 11.38 55.43 0.63 -24.85 16 23 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 C 0.11 2.64 5.38 -3.71 -0.02 2.62 16 28 O -0.17 -1.83 10.65 5.71 0.06 -1.77 16 29 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 33 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 34 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.08 0.78 8.14 -51.92 -0.42 0.35 16 38 H 0.41 4.63 7.96 -40.82 -0.33 4.30 16 39 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.14 2.48 3.78 -56.75 -0.21 2.26 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.06 1.10 8.14 -51.92 -0.42 0.68 16 43 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 46 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 47 H 0.12 3.44 5.17 -51.93 -0.27 3.17 16 LS Contribution 385.45 15.07 5.81 5.81 Total: -1.00 -32.29 385.45 -8.61 -40.90 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -7.11 Total: 5.45 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: -2.28 Total: 0.17 kcal Atomic # 7 Polarization: -46.08 SS G_CDS: -0.22 Total: -46.30 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: 0.22 Total: -22.21 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.29 -8.61 -40.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333983057.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.087 kcal (2) G-P(sol) polarization free energy of solvation -32.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.56 seconds