Wall clock time and date at job start Tue Mar 31 2020 17:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34521 * 125.78871 * 2 1 4 4 C 1.41384 * 106.83805 * 179.75467 * 3 2 1 5 5 C 1.34513 * 106.84046 * 0.36332 * 4 3 2 6 6 C 1.50699 * 125.78905 * 179.88994 * 5 4 3 7 7 C 1.52998 * 109.47049 * 89.72128 * 6 5 4 8 8 N 1.46502 * 109.47360 * 180.02562 * 7 6 5 9 9 C 1.34782 * 120.00166 * 180.02562 * 8 7 6 10 10 O 1.21350 * 119.99528 * 359.97438 * 9 8 7 11 11 C 1.49446 * 120.00084 * 179.97438 * 9 8 7 12 12 O 1.21356 * 119.99803 * 353.37756 * 11 9 8 13 13 N 1.34768 * 120.00057 * 173.37736 * 11 9 8 14 14 C 1.46923 * 120.63140 * 353.06161 * 13 11 9 15 15 C 1.53197 * 108.77603 * 126.41596 * 14 13 11 16 16 C 1.53036 * 109.34037 * 54.62030 * 15 14 13 17 17 C 1.53043 * 109.53781 * 298.68543 * 16 15 14 18 18 H 1.09000 * 109.49772 * 301.34791 * 17 16 15 19 19 C 1.50699 * 109.49861 * 181.28187 * 17 16 15 20 20 H 1.08009 * 119.99826 * 0.06421 * 19 17 16 21 21 C 1.37874 * 120.00391 * 180.34183 * 19 17 16 22 22 N 1.31511 * 119.99935 * 359.72505 * 21 19 17 23 23 Si 1.86803 * 120.00371 * 179.72468 * 21 19 17 24 24 H 1.48501 * 109.46889 * 59.99781 * 23 21 19 25 25 H 1.48493 * 109.47092 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.46907 * 300.00065 * 23 21 19 27 27 C 1.46927 * 120.63303 * 173.08900 * 13 11 9 28 28 O 1.34303 * 125.78959 * 179.97438 * 2 1 3 29 29 H 1.08994 * 109.47302 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47119 * 300.00073 * 1 2 3 31 31 H 1.08999 * 109.47237 * 59.99876 * 1 2 3 32 32 H 1.08001 * 126.57975 * 359.97438 * 3 2 1 33 33 H 1.08000 * 126.57824 * 180.24315 * 4 3 2 34 34 H 1.09004 * 109.47291 * 329.72405 * 6 5 4 35 35 H 1.08999 * 109.47577 * 209.72333 * 6 5 4 36 36 H 1.09007 * 109.47352 * 60.00056 * 7 6 5 37 37 H 1.09010 * 109.47442 * 300.00142 * 7 6 5 38 38 H 0.96996 * 120.00059 * 359.97438 * 8 7 6 39 39 H 1.08998 * 109.59171 * 246.19792 * 14 13 11 40 40 H 1.09003 * 109.58922 * 6.48999 * 14 13 11 41 41 H 1.08995 * 109.50150 * 174.58993 * 15 14 13 42 42 H 1.09009 * 109.49617 * 294.68452 * 15 14 13 43 43 H 1.08997 * 109.49188 * 178.64856 * 16 15 14 44 44 H 1.09001 * 109.43006 * 58.68768 * 16 15 14 45 45 H 0.97000 * 120.00590 * 180.02562 * 22 21 19 46 46 H 1.09003 * 109.59192 * 113.79627 * 27 13 11 47 47 H 1.08998 * 109.70190 * 353.44355 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0912 0.0000 4 6 3.6308 0.6321 0.0058 5 6 3.5814 -0.7121 0.0008 6 6 4.7705 -1.6378 0.0018 7 6 5.1720 -1.9507 1.4446 8 7 6.3285 -2.8501 1.4457 9 6 6.8592 -3.2641 2.6134 10 8 6.3795 -2.8913 3.6639 11 6 8.0386 -4.1820 2.6144 12 8 8.4438 -4.6503 1.5708 13 7 8.6520 -4.4897 3.7743 14 6 8.2721 -3.8162 5.0236 15 6 7.9335 -4.8792 6.0736 16 6 9.1112 -5.8463 6.2139 17 6 9.3588 -6.5486 4.8769 18 1 8.4586 -7.0840 4.5750 19 6 10.4983 -7.5237 5.0244 20 1 10.9959 -7.6327 5.9768 21 6 10.9095 -8.2724 3.9421 22 7 10.3038 -8.1396 2.7824 23 14 12.3271 -9.4755 4.1230 24 1 11.9869 -10.4900 5.1527 25 1 12.5710 -10.1520 2.8238 26 1 13.5498 -8.7411 4.5366 27 6 9.7137 -5.5046 3.8135 28 8 2.2924 -1.0894 0.0005 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.9665 2.1205 -0.0004 33 1 4.5212 1.2433 0.0110 34 1 5.6043 -1.1589 -0.5116 35 1 4.5110 -2.5634 -0.5119 36 1 4.3383 -2.4297 1.9581 37 1 5.4317 -1.0250 1.9585 38 1 6.7117 -3.1483 0.6060 39 1 9.1031 -3.2056 5.3769 40 1 7.4023 -3.1832 4.8478 41 1 7.7431 -4.3962 7.0320 42 1 7.0463 -5.4299 5.7606 43 1 8.8824 -6.5896 6.9776 44 1 10.0036 -5.2913 6.5033 45 1 10.5927 -8.6666 2.0211 46 1 10.6622 -5.0316 4.0680 47 1 9.7960 -5.9879 2.8400 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333983057.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:21 Heat of formation + Delta-G solvation = -70.530285 kcal Electronic energy + Delta-G solvation = -28291.430834 eV Core-core repulsion = 24247.344589 eV Total energy + Delta-G solvation = -4044.086246 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.55015 -41.95893 -39.85590 -38.54139 -36.97946 -35.21943 -34.13211 -33.84835 -33.42366 -31.57161 -31.28105 -28.05083 -27.06466 -26.50300 -24.60998 -23.53208 -23.24831 -22.67811 -21.76209 -21.05623 -20.43395 -18.93320 -18.26737 -17.98878 -17.49823 -17.13628 -17.06733 -16.74411 -16.48387 -15.98614 -15.94457 -15.48272 -15.18793 -15.00693 -14.77474 -14.52927 -14.44585 -14.00496 -13.82942 -13.80533 -13.72892 -13.49031 -13.44661 -13.13601 -13.02496 -12.85087 -12.78626 -12.51661 -12.33760 -12.29064 -12.17770 -11.71714 -11.62128 -11.17024 -10.98667 -10.81854 -10.54707 -10.41452 -10.02169 -9.55121 -9.21832 -8.12215 -6.28730 0.33328 0.69279 1.29895 1.42507 1.44235 1.52015 1.67919 1.99186 2.14080 2.41524 2.58877 3.15779 3.29219 3.72792 3.80243 3.91567 4.11609 4.14231 4.15684 4.18745 4.34110 4.42187 4.52766 4.57503 4.68016 4.72752 4.73203 4.75876 4.81703 4.86886 4.91338 4.96356 5.05444 5.11589 5.15094 5.23592 5.26745 5.31095 5.38843 5.51255 5.56494 5.64965 5.83625 5.93400 5.97536 6.22980 6.29435 6.44325 6.72728 6.82859 6.97270 7.40977 8.91753 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.024405 B = 0.002061 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.013452 B =13580.010273 C =14146.937383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.026 4.026 3 C -0.226 4.226 4 C -0.204 4.204 5 C -0.030 4.030 6 C -0.042 4.042 7 C 0.125 3.875 8 N -0.685 5.685 9 C 0.522 3.478 10 O -0.520 6.520 11 C 0.487 3.513 12 O -0.557 6.557 13 N -0.575 5.575 14 C 0.049 3.951 15 C -0.121 4.121 16 C -0.106 4.106 17 C 0.038 3.962 18 H -0.012 1.012 19 C -0.536 4.536 20 H 0.063 0.937 21 C 0.011 3.989 22 N -0.915 5.915 23 Si 0.960 3.040 24 H -0.270 1.270 25 H -0.287 1.287 26 H -0.267 1.267 27 C 0.121 3.879 28 O -0.195 6.195 29 H 0.076 0.924 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.166 0.834 33 H 0.165 0.835 34 H 0.126 0.874 35 H 0.096 0.904 36 H 0.067 0.933 37 H 0.084 0.916 38 H 0.421 0.579 39 H 0.072 0.928 40 H 0.156 0.844 41 H 0.098 0.902 42 H 0.045 0.955 43 H 0.053 0.947 44 H 0.058 0.942 45 H 0.262 0.738 46 H 0.044 0.956 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.540 20.097 -5.249 26.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.076 4.076 3 C -0.245 4.245 4 C -0.223 4.223 5 C -0.080 4.080 6 C -0.080 4.080 7 C 0.002 3.998 8 N -0.337 5.337 9 C 0.303 3.697 10 O -0.398 6.398 11 C 0.269 3.731 12 O -0.436 6.436 13 N -0.306 5.306 14 C -0.071 4.071 15 C -0.159 4.159 16 C -0.144 4.144 17 C 0.019 3.981 18 H 0.006 0.994 19 C -0.574 4.574 20 H 0.081 0.919 21 C -0.189 4.189 22 N -0.554 5.554 23 Si 0.785 3.215 24 H -0.195 1.195 25 H -0.213 1.213 26 H -0.192 1.192 27 C 0.000 4.000 28 O -0.093 6.093 29 H 0.095 0.905 30 H 0.118 0.882 31 H 0.120 0.880 32 H 0.184 0.816 33 H 0.183 0.817 34 H 0.144 0.856 35 H 0.115 0.885 36 H 0.085 0.915 37 H 0.103 0.897 38 H 0.259 0.741 39 H 0.090 0.910 40 H 0.172 0.828 41 H 0.116 0.884 42 H 0.064 0.936 43 H 0.072 0.928 44 H 0.076 0.924 45 H 0.071 0.929 46 H 0.063 0.937 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -16.770 19.763 -5.233 26.442 hybrid contribution 1.190 -1.100 -0.484 1.691 sum -15.580 18.664 -5.718 24.975 Atomic orbital electron populations 1.20482 0.82934 1.04625 1.05063 1.23193 0.95501 0.83876 1.05053 1.21904 0.92657 1.00408 1.09565 1.21941 0.99238 0.93835 1.07322 1.22224 0.82892 0.94802 1.08092 1.20236 0.92491 0.99344 0.95883 1.21525 0.86881 0.93710 0.97670 1.45697 1.32042 1.47585 1.08425 1.19950 0.84005 0.80868 0.84852 1.90289 1.61919 1.57453 1.30186 1.20422 0.84840 0.83366 0.84464 1.90732 1.66034 1.54991 1.31884 1.48465 1.35874 1.38136 1.08122 1.23317 1.04912 0.96156 0.82727 1.21825 0.97658 0.96903 0.99500 1.21558 0.97720 0.97736 0.97403 1.18917 0.95109 0.92260 0.91834 0.99360 1.21454 1.17375 1.21974 0.96625 0.91910 1.25892 0.99283 0.98714 0.95007 1.70036 1.42275 1.41529 1.01535 0.85576 0.79665 0.79044 0.77180 1.19490 1.21285 1.19215 1.21948 0.86780 0.87350 1.03935 1.83968 1.17021 1.36284 1.71983 0.90531 0.88190 0.87987 0.81624 0.81732 0.85628 0.88509 0.91476 0.89734 0.74081 0.91001 0.82836 0.88389 0.93623 0.92830 0.92376 0.92905 0.93736 0.89634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.65 10.42 71.24 0.74 0.09 16 2 C -0.03 -0.43 7.32 24.83 0.18 -0.25 16 3 C -0.23 -3.50 10.81 22.19 0.24 -3.26 16 4 C -0.20 -3.30 10.81 22.19 0.24 -3.06 16 5 C -0.03 -0.53 6.57 24.83 0.16 -0.37 16 6 C -0.04 -0.59 5.86 29.85 0.17 -0.41 16 7 C 0.12 2.30 5.66 86.38 0.49 2.79 16 8 N -0.68 -16.10 5.55 -464.39 -2.58 -18.67 16 9 C 0.52 16.64 7.78 87.27 0.68 17.32 16 10 O -0.52 -17.08 13.10 -3.25 -0.04 -17.12 16 11 C 0.49 19.82 7.74 87.27 0.68 20.50 16 12 O -0.56 -25.88 15.95 -3.27 -0.05 -25.93 16 13 N -0.57 -24.35 2.97 -820.48 -2.44 -26.79 16 14 C 0.05 1.69 6.27 86.36 0.54 2.24 16 15 C -0.12 -4.16 6.08 30.67 0.19 -3.97 16 16 C -0.11 -4.36 5.11 30.62 0.16 -4.20 16 17 C 0.04 1.96 2.25 -11.46 -0.03 1.93 16 18 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 19 C -0.54 -29.62 8.57 25.60 0.22 -29.40 16 20 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 21 C 0.01 0.59 5.30 84.65 0.45 1.04 16 22 N -0.92 -54.75 11.38 21.45 0.24 -54.51 16 23 Si 0.96 43.97 29.54 68.60 2.03 46.00 16 24 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 25 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 26 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 27 C 0.12 6.12 5.38 86.36 0.46 6.58 16 28 O -0.19 -4.00 10.65 -2.49 -0.03 -4.03 16 29 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.17 1.77 8.06 -2.91 -0.02 1.74 16 33 H 0.17 1.98 8.06 -2.91 -0.02 1.95 16 34 H 0.13 1.19 8.14 -2.38 -0.02 1.17 16 35 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 37 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 38 H 0.42 8.98 7.96 -92.71 -0.74 8.24 16 39 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.16 5.07 3.78 -78.73 -0.30 4.77 16 41 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 42 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 43 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 44 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 45 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 46 H 0.04 2.21 8.14 -2.39 -0.02 2.19 16 47 H 0.09 5.01 5.17 -2.39 -0.01 4.99 16 Total: -1.00 -72.14 385.45 2.67 -69.47 By element: Atomic # 1 Polarization: 24.07 SS G_CDS: -0.04 Total: 24.03 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: 5.58 Total: 7.56 kcal Atomic # 7 Polarization: -95.21 SS G_CDS: -4.77 Total: -99.98 kcal Atomic # 8 Polarization: -46.96 SS G_CDS: -0.12 Total: -47.08 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -72.14 2.67 -69.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333983057.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.063 kcal (2) G-P(sol) polarization free energy of solvation -72.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds