Wall clock time and date at job start Tue Mar 31 2020 20:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30841 * 125.83148 * 2 1 4 4 N 1.40073 * 108.33853 * 180.02562 * 3 2 1 5 5 C 1.46504 * 126.06330 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.46841 * 90.03280 * 5 4 3 7 7 H 1.08001 * 119.99960 * 0.02562 * 6 5 4 8 8 C 1.37871 * 120.00010 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00181 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00229 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.47156 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47272 * 119.99652 * 10 8 6 13 13 H 1.48500 * 109.47474 * 240.00499 * 10 8 6 14 14 C 1.35790 * 107.86989 * 359.76766 * 4 3 2 15 15 C 1.50706 * 126.20601 * 180.27434 * 14 4 3 16 16 C 1.35639 * 107.58041 * 0.38098 * 14 4 3 17 17 O 1.36187 * 126.06501 * 179.87949 * 16 14 4 18 18 C 1.34752 * 116.99548 * 269.71763 * 17 16 14 19 19 O 1.21547 * 120.00399 * 359.97438 * 18 17 16 20 20 C 1.46955 * 119.99618 * 179.97438 * 18 17 16 21 21 C 1.33077 * 119.99996 * 186.31420 * 20 18 17 22 22 C 1.50698 * 120.00053 * 17.57016 * 21 20 18 23 23 C 1.53175 * 109.54395 * 249.59089 * 22 21 20 24 24 C 1.53099 * 109.16324 * 183.15232 * 23 22 21 25 25 O 1.42906 * 109.41242 * 57.60774 * 24 23 22 26 26 C 1.42899 * 114.09969 * 298.83839 * 25 24 23 27 27 C 1.53102 * 109.41020 * 61.16056 * 26 25 24 28 28 H 1.08997 * 109.47006 * 269.95570 * 1 2 3 29 29 H 1.09004 * 109.46859 * 29.95826 * 1 2 3 30 30 H 1.09003 * 109.46748 * 149.95555 * 1 2 3 31 31 H 1.09003 * 109.46979 * 210.02904 * 5 4 3 32 32 H 1.08997 * 109.47418 * 330.03236 * 5 4 3 33 33 H 0.97001 * 120.00248 * 179.97438 * 9 8 6 34 34 H 1.08995 * 109.47100 * 270.15230 * 15 14 4 35 35 H 1.09003 * 109.46857 * 30.15385 * 15 14 4 36 36 H 1.09002 * 109.46486 * 150.14813 * 15 14 4 37 37 H 1.08002 * 119.99661 * 6.31180 * 20 18 17 38 38 H 1.07997 * 120.00032 * 197.57061 * 21 20 18 39 39 H 1.08999 * 109.61421 * 9.81123 * 22 21 20 40 40 H 1.09003 * 109.52302 * 303.05443 * 23 22 21 41 41 H 1.09005 * 109.52400 * 63.24964 * 23 22 21 42 42 H 1.09000 * 109.48189 * 297.62402 * 24 23 22 43 43 H 1.09002 * 109.47946 * 177.59141 * 24 23 22 44 44 H 1.09000 * 109.48199 * 301.18336 * 26 25 24 45 45 H 1.08993 * 109.47985 * 181.13975 * 26 25 24 46 46 H 1.09007 * 109.51712 * 182.48388 * 27 26 25 47 47 H 1.08999 * 109.57235 * 62.33398 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2730 1.0608 0.0000 4 7 3.6089 0.6397 -0.0006 5 6 4.7874 1.5100 -0.0013 6 6 5.1927 1.8080 1.4193 7 1 4.6290 1.3904 2.2405 8 6 6.2836 2.6127 1.6706 9 7 6.9703 3.1207 0.6706 10 14 6.7855 2.9826 3.4315 11 1 5.8561 2.2976 4.3655 12 1 8.1693 2.4966 3.6643 13 1 6.7297 4.4481 3.6647 14 6 3.6178 -0.7181 0.0043 15 6 4.8397 -1.6003 0.0114 16 6 2.3275 -1.1363 -0.0008 17 8 1.9043 -2.4308 -0.0006 18 6 1.7139 -3.0122 -1.2012 19 8 1.9189 -2.3828 -2.2207 20 6 1.2583 -4.4072 -1.2780 21 6 1.1906 -5.0212 -2.4568 22 6 1.9327 -4.4601 -3.6423 23 6 0.9301 -3.9018 -4.6569 24 6 1.6878 -3.4059 -5.8914 25 8 2.4517 -4.4803 -6.4431 26 6 3.4380 -5.0109 -5.5556 27 6 2.7505 -5.5713 -4.3076 28 1 -0.3633 -0.0008 1.0276 29 1 -0.3633 0.8904 -0.5132 30 1 -0.3633 -0.8896 -0.5145 31 1 5.6080 1.0100 -0.5159 32 1 4.5507 2.4419 -0.5147 33 1 7.7376 3.6871 0.8474 34 1 5.1392 -1.8144 -1.0145 35 1 5.6528 -1.0906 0.5284 36 1 4.6108 -2.5338 0.5255 37 1 0.9785 -4.9342 -0.3778 38 1 0.6039 -5.9215 -2.5637 39 1 2.5999 -3.6636 -3.3128 40 1 0.2321 -4.6864 -4.9489 41 1 0.3817 -3.0731 -4.2090 42 1 2.3563 -2.5937 -5.6058 43 1 0.9761 -3.0467 -6.6348 44 1 4.1293 -4.2198 -5.2654 45 1 3.9869 -5.8079 -6.0569 46 1 3.5041 -5.9366 -3.6098 47 1 2.0895 -6.3901 -4.5914 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338369720.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:48 Heat of formation + Delta-G solvation = -57.830502 kcal Electronic energy + Delta-G solvation = -29227.674762 eV Core-core repulsion = 25184.139220 eV Total energy + Delta-G solvation = -4043.535542 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 3.34 seconds Orbital eigenvalues (eV) -42.68143 -41.28772 -40.23019 -38.09304 -36.00345 -35.89583 -34.37818 -32.84553 -32.29606 -32.02939 -30.71030 -28.30452 -27.78190 -26.62578 -24.98995 -24.49290 -24.00891 -21.51271 -21.29901 -20.82937 -20.51983 -18.93590 -18.83160 -17.85996 -17.30096 -16.96208 -16.79174 -16.62733 -16.28492 -15.89583 -15.78606 -15.49358 -14.94738 -14.75568 -14.71824 -14.52445 -14.32255 -14.21506 -14.07996 -13.70616 -13.42806 -13.35505 -13.33414 -13.19389 -13.07747 -12.88447 -12.74490 -12.58470 -12.40414 -12.30986 -12.26602 -11.90736 -11.76597 -11.35333 -11.29026 -10.88979 -10.78547 -10.58215 -10.24026 -10.07500 -9.34686 -8.39175 -6.57151 0.10651 0.77663 1.25620 1.35120 1.37136 1.49100 1.62990 1.92923 2.30221 2.34546 2.91635 2.92730 3.53513 3.62265 3.68997 3.82914 3.89910 3.96040 4.08398 4.12212 4.30899 4.35397 4.38102 4.49887 4.51726 4.56270 4.58807 4.67004 4.69986 4.74596 4.76305 4.78154 4.83000 4.87497 4.94568 4.97884 5.00209 5.11309 5.17227 5.21533 5.25234 5.33371 5.47176 5.66928 5.71939 5.85498 6.05264 6.21512 6.52572 6.76198 6.94975 7.14381 8.68325 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015574 B = 0.002813 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.452908 B = 9951.545556 C =10617.476835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.055 3.945 3 N -0.324 5.324 4 N -0.343 5.343 5 C 0.275 3.725 6 C -0.556 4.556 7 H 0.052 0.948 8 C 0.023 3.977 9 N -0.917 5.917 10 Si 0.975 3.025 11 H -0.272 1.272 12 H -0.266 1.266 13 H -0.274 1.274 14 C 0.087 3.913 15 C -0.086 4.086 16 C -0.097 4.097 17 O -0.252 6.252 18 C 0.465 3.535 19 O -0.518 6.518 20 C -0.204 4.204 21 C -0.018 4.018 22 C -0.103 4.103 23 C -0.129 4.129 24 C 0.059 3.941 25 O -0.399 6.399 26 C 0.053 3.947 27 C -0.139 4.139 28 H 0.095 0.905 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.049 0.951 32 H 0.027 0.973 33 H 0.275 0.725 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.103 0.897 37 H 0.173 0.827 38 H 0.178 0.822 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.062 0.938 42 H 0.032 0.968 43 H 0.105 0.895 44 H 0.037 0.963 45 H 0.114 0.886 46 H 0.085 0.915 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.338 -21.826 -7.387 25.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.111 4.111 3 N -0.148 5.148 4 N -0.124 5.124 5 C 0.157 3.843 6 C -0.594 4.594 7 H 0.070 0.930 8 C -0.178 4.178 9 N -0.555 5.555 10 Si 0.799 3.201 11 H -0.196 1.196 12 H -0.190 1.190 13 H -0.200 1.200 14 C -0.045 4.045 15 C -0.144 4.144 16 C -0.151 4.151 17 O -0.164 6.164 18 C 0.314 3.686 19 O -0.409 6.409 20 C -0.223 4.223 21 C -0.036 4.036 22 C -0.121 4.121 23 C -0.167 4.167 24 C -0.017 4.017 25 O -0.318 6.318 26 C -0.023 4.023 27 C -0.177 4.177 28 H 0.113 0.887 29 H 0.097 0.903 30 H 0.100 0.900 31 H 0.067 0.933 32 H 0.045 0.955 33 H 0.084 0.916 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.122 0.878 37 H 0.190 0.810 38 H 0.196 0.804 39 H 0.100 0.900 40 H 0.105 0.895 41 H 0.081 0.919 42 H 0.050 0.950 43 H 0.123 0.877 44 H 0.055 0.945 45 H 0.132 0.868 46 H 0.103 0.897 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -10.976 -20.199 -7.929 24.318 hybrid contribution 0.708 0.440 0.972 1.280 sum -10.267 -19.759 -6.958 23.329 Atomic orbital electron populations 1.20190 0.83930 1.03563 1.04120 1.23067 0.98891 0.89445 0.99650 1.77267 0.87627 1.23638 1.26276 1.49086 1.05682 1.04469 1.53146 1.19306 0.78275 0.88489 0.98227 1.21433 1.13869 1.32660 0.91402 0.92968 1.25778 0.95276 0.94274 1.02515 1.70013 1.19495 1.32927 1.33108 0.85248 0.78455 0.78242 0.78182 1.19618 1.19043 1.19950 1.21641 0.97704 0.85632 0.99493 1.20488 0.92291 0.97949 1.03671 1.17596 0.90101 0.83437 1.23960 1.84781 1.76691 1.22287 1.32671 1.23147 0.73816 0.90289 0.81322 1.90773 1.48182 1.65892 1.36008 1.22145 1.08912 0.89648 1.01545 1.24159 0.89559 0.98456 0.91439 1.21012 0.97835 0.98919 0.94373 1.21947 0.98112 1.01561 0.95059 1.22596 0.94409 0.88488 0.96239 1.87882 1.51047 1.51599 1.41286 1.22731 0.90046 0.98318 0.91231 1.22193 1.00370 0.97961 0.97174 0.88673 0.90340 0.89988 0.93316 0.95539 0.91609 0.89723 0.90516 0.87819 0.80985 0.80438 0.90030 0.89459 0.91914 0.94999 0.87724 0.94487 0.86829 0.89668 0.89068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.77 10.44 71.24 0.74 -1.03 16 2 C 0.06 2.28 7.22 43.17 0.31 2.60 16 3 N -0.32 -15.83 12.57 -47.20 -0.59 -16.42 16 4 N -0.34 -17.11 3.62 -337.50 -1.22 -18.34 16 5 C 0.28 14.93 5.84 85.63 0.50 15.43 16 6 C -0.56 -31.41 9.39 25.60 0.24 -31.17 16 7 H 0.05 3.04 7.81 -2.91 -0.02 3.01 16 8 C 0.02 1.25 5.46 84.65 0.46 1.71 16 9 N -0.92 -52.14 13.29 21.45 0.28 -51.85 16 10 Si 0.98 43.04 29.54 68.60 2.03 45.07 16 11 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 12 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 13 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 14 C 0.09 3.75 6.97 41.35 0.29 4.04 16 15 C -0.09 -3.00 9.89 71.24 0.70 -2.30 16 16 C -0.10 -3.89 5.35 22.14 0.12 -3.78 16 17 O -0.25 -8.26 10.14 -3.33 -0.03 -8.29 16 18 C 0.47 13.17 7.62 70.11 0.53 13.71 16 19 O -0.52 -17.73 12.70 19.68 0.25 -17.48 16 20 C -0.20 -3.47 10.12 23.40 0.24 -3.24 16 21 C -0.02 -0.24 8.82 24.53 0.22 -0.02 16 22 C -0.10 -1.89 1.73 -11.42 -0.02 -1.91 16 23 C -0.13 -2.41 5.25 30.69 0.16 -2.25 16 24 C 0.06 1.24 6.84 72.02 0.49 1.74 16 25 O -0.40 -8.67 10.77 -148.98 -1.60 -10.27 16 26 C 0.05 0.92 6.84 72.02 0.49 1.42 16 27 C -0.14 -1.95 5.40 30.69 0.17 -1.78 16 28 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 29 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 30 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.05 2.63 7.71 -2.39 -0.02 2.61 16 32 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 34 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 35 H 0.08 2.86 7.77 -2.39 -0.02 2.84 16 36 H 0.10 3.00 8.14 -2.39 -0.02 2.98 16 37 H 0.17 1.89 8.06 -2.91 -0.02 1.86 16 38 H 0.18 0.88 8.06 -2.91 -0.02 0.86 16 39 H 0.08 2.14 5.13 -2.43 -0.01 2.13 16 40 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.06 1.37 7.79 -2.38 -0.02 1.36 16 42 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 47 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -72.52 393.63 5.72 -66.80 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: 0.96 Total: 17.61 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: 5.65 Total: -6.81 kcal Atomic # 7 Polarization: -85.08 SS G_CDS: -1.53 Total: -86.61 kcal Atomic # 8 Polarization: -34.66 SS G_CDS: -1.39 Total: -36.05 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -72.52 5.72 -66.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338369720.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.970 kcal (2) G-P(sol) polarization free energy of solvation -72.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.34 seconds