Wall clock time and date at job start Tue Mar 31 2020 20:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30851 * 125.82970 * 2 1 4 4 N 1.40073 * 108.33226 * 180.27727 * 3 2 1 5 5 C 1.46505 * 126.05653 * 179.75482 * 4 3 2 6 6 C 1.50699 * 109.46920 * 269.95700 * 5 4 3 7 7 H 1.08001 * 120.00485 * 0.02562 * 6 5 4 8 8 C 1.37881 * 119.99986 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99728 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00075 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47001 * 90.00649 * 10 8 6 12 12 H 1.48500 * 109.47182 * 209.99968 * 10 8 6 13 13 H 1.48496 * 109.47240 * 330.00277 * 10 8 6 14 14 C 1.35773 * 107.87772 * 359.72105 * 4 3 2 15 15 C 1.50705 * 126.21106 * 179.97438 * 14 4 3 16 16 C 1.35656 * 107.58248 * 359.97438 * 14 4 3 17 17 O 1.36180 * 126.06500 * 180.02562 * 16 14 4 18 18 C 1.34752 * 117.00270 * 89.99922 * 17 16 14 19 19 O 1.21556 * 119.99534 * 359.97438 * 18 17 16 20 20 C 1.46940 * 119.99971 * 179.97438 * 18 17 16 21 21 C 1.33086 * 120.00308 * 179.97438 * 20 18 17 22 22 C 1.50697 * 120.00272 * 180.02562 * 21 20 18 23 23 C 1.53175 * 109.54085 * 120.00659 * 22 21 20 24 24 C 1.53092 * 109.16344 * 176.84900 * 23 22 21 25 25 O 1.42905 * 109.41215 * 302.38824 * 24 23 22 26 26 C 1.42905 * 114.09831 * 61.16158 * 25 24 23 27 27 C 1.53098 * 109.41155 * 298.83847 * 26 25 24 28 28 H 1.08989 * 109.47215 * 270.18815 * 1 2 3 29 29 H 1.09001 * 109.46828 * 30.19053 * 1 2 3 30 30 H 1.08998 * 109.46573 * 150.18631 * 1 2 3 31 31 H 1.08997 * 109.47727 * 29.96133 * 5 4 3 32 32 H 1.09005 * 109.47120 * 149.96169 * 5 4 3 33 33 H 0.97009 * 119.99946 * 179.97438 * 9 8 6 34 34 H 1.08994 * 109.47085 * 269.99980 * 15 14 4 35 35 H 1.09004 * 109.47021 * 30.00323 * 15 14 4 36 36 H 1.09002 * 109.47086 * 150.00158 * 15 14 4 37 37 H 1.08006 * 120.00263 * 0.02562 * 20 18 17 38 38 H 1.08006 * 119.99430 * 0.02562 * 21 20 18 39 39 H 1.08996 * 109.54186 * 359.83024 * 22 21 20 40 40 H 1.09004 * 109.52714 * 56.93920 * 23 22 21 41 41 H 1.09001 * 109.57654 * 296.78651 * 23 22 21 42 42 H 1.08997 * 109.48111 * 182.40965 * 24 23 22 43 43 H 1.09000 * 109.48212 * 62.37239 * 24 23 22 44 44 H 1.09000 * 109.47932 * 58.81878 * 26 25 24 45 45 H 1.08993 * 109.48024 * 178.86013 * 26 25 24 46 46 H 1.08996 * 109.52270 * 297.70307 * 27 26 25 47 47 H 1.08995 * 109.57012 * 177.54155 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2730 1.0609 0.0000 4 7 3.6089 0.6398 -0.0064 5 6 4.7874 1.5101 -0.0137 6 6 5.1847 1.8059 -1.4369 7 1 4.6160 1.3878 -2.2544 8 6 6.2736 2.6111 -1.6956 9 7 6.9658 3.1207 -0.7002 10 14 6.7664 2.9772 -3.4598 11 1 6.0648 4.2001 -3.9262 12 1 8.2342 3.1918 -3.5294 13 1 6.3922 1.8308 -4.3264 14 6 3.6179 -0.7179 -0.0040 15 6 4.8398 -1.6002 -0.0096 16 6 2.3275 -1.1363 0.0043 17 8 1.9044 -2.4307 0.0096 18 6 1.7212 -3.0096 1.2126 19 8 1.9332 -2.3781 2.2294 20 6 1.2652 -4.4040 1.2951 21 6 1.0847 -4.9759 2.4832 22 6 0.6176 -6.4061 2.5678 23 6 1.6631 -7.2434 3.3109 24 6 1.1451 -8.6762 3.4611 25 8 -0.1046 -8.6593 4.1540 26 6 -1.1343 -7.9306 3.4826 27 6 -0.7078 -6.4678 3.3332 28 1 -0.3633 0.0034 1.0275 29 1 -0.3633 0.8883 -0.5168 30 1 -0.3632 -0.8917 -0.5109 31 1 4.5535 2.4428 0.4996 32 1 5.6109 1.0109 0.4971 33 1 7.7321 3.6869 -0.8822 34 1 5.1283 -1.8147 -1.0385 35 1 5.6583 -1.0903 0.4987 36 1 4.6164 -2.5335 0.5073 37 1 1.0773 -4.9651 0.3916 38 1 1.2730 -4.4149 3.3867 39 1 0.4787 -6.8044 1.5628 40 1 1.8393 -6.8145 4.2974 41 1 2.5947 -7.2503 2.7451 42 1 1.8664 -9.2661 4.0266 43 1 1.0077 -9.1184 2.4743 44 1 -1.3014 -8.3630 2.4961 45 1 -2.0549 -7.9833 4.0636 46 1 -0.5796 -6.0233 4.3201 47 1 -1.4721 -5.9191 2.7830 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338369721.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:58 Heat of formation + Delta-G solvation = -52.030679 kcal Electronic energy + Delta-G solvation = -28112.716005 eV Core-core repulsion = 24069.431962 eV Total energy + Delta-G solvation = -4043.284043 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.15798 -39.97094 -39.55736 -36.73131 -35.60888 -34.00910 -32.58970 -31.97792 -31.56849 -30.78440 -29.07825 -27.03761 -26.01296 -25.78374 -23.99781 -23.47078 -22.43408 -20.76286 -20.04637 -19.36082 -19.19575 -17.73024 -17.02079 -16.70633 -16.44536 -16.37730 -15.66083 -15.23179 -15.15484 -14.88636 -14.54698 -14.35232 -14.32268 -13.63055 -13.30358 -13.13843 -12.97730 -12.88087 -12.76967 -12.55003 -12.41635 -12.07177 -12.02262 -11.81695 -11.72994 -11.58008 -11.51779 -11.45392 -11.06754 -10.97194 -10.82595 -10.81478 -10.46876 -10.31896 -9.99869 -9.80318 -9.78124 -9.70086 -8.69287 -8.36112 -7.71462 -6.31151 -4.39177 0.98240 2.34648 2.73411 2.99498 3.18975 3.24865 3.26045 3.33709 3.43381 3.59428 4.23963 4.25453 4.30121 4.33170 4.53514 4.73023 4.76358 4.90659 4.96493 5.02925 5.04304 5.14552 5.21278 5.23565 5.24524 5.33836 5.36474 5.51709 5.54984 5.60984 5.72940 5.73619 5.88940 5.93903 5.99977 6.08802 6.12383 6.13897 6.25970 6.47895 6.64328 6.74257 6.92169 6.97891 7.25748 7.58725 7.79919 7.82167 8.18674 8.42541 8.66811 9.27362 10.76615 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.023791 B = 0.002074 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.617641 B =13496.215109 C =14108.949567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.058 3.942 3 N -0.279 5.279 4 N -0.315 5.315 5 C 0.258 3.742 6 C -0.539 4.539 7 H 0.066 0.934 8 C 0.066 3.934 9 N -0.890 5.890 10 Si 0.908 3.092 11 H -0.277 1.277 12 H -0.283 1.283 13 H -0.271 1.271 14 C 0.103 3.897 15 C -0.084 4.084 16 C -0.102 4.102 17 O -0.250 6.250 18 C 0.472 3.528 19 O -0.497 6.497 20 C -0.180 4.180 21 C -0.056 4.056 22 C -0.067 4.067 23 C -0.150 4.150 24 C 0.061 3.939 25 O -0.384 6.384 26 C 0.061 3.939 27 C -0.150 4.150 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.269 0.731 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.138 0.862 38 H 0.130 0.870 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.096 0.904 43 H 0.052 0.948 44 H 0.052 0.948 45 H 0.096 0.904 46 H 0.078 0.922 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.870 -22.906 6.056 26.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.108 4.108 3 N -0.103 5.103 4 N -0.096 5.096 5 C 0.141 3.859 6 C -0.577 4.577 7 H 0.084 0.916 8 C -0.138 4.138 9 N -0.528 5.528 10 Si 0.735 3.265 11 H -0.202 1.202 12 H -0.208 1.208 13 H -0.196 1.196 14 C -0.030 4.030 15 C -0.142 4.142 16 C -0.156 4.156 17 O -0.161 6.161 18 C 0.317 3.683 19 O -0.385 6.385 20 C -0.199 4.199 21 C -0.075 4.075 22 C -0.085 4.085 23 C -0.188 4.188 24 C -0.016 4.016 25 O -0.303 6.303 26 C -0.016 4.016 27 C -0.187 4.187 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.156 0.844 38 H 0.148 0.852 39 H 0.103 0.897 40 H 0.096 0.904 41 H 0.098 0.902 42 H 0.114 0.886 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.114 0.886 46 H 0.096 0.904 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.491 -21.281 6.579 25.538 hybrid contribution 0.524 -0.168 -1.193 1.314 sum -11.967 -21.449 5.386 25.145 Atomic orbital electron populations 1.20059 0.87282 1.02874 1.02289 1.22249 0.96835 0.89897 1.01798 1.77356 0.87369 1.21643 1.23930 1.49318 1.06013 1.03598 1.50662 1.19799 0.77541 0.89319 0.99267 1.21287 1.13460 1.31915 0.91084 0.91626 1.24938 0.95591 0.94915 0.98316 1.69922 1.19027 1.32590 1.31228 0.86318 0.77643 0.79014 0.83503 1.20242 1.20828 1.19618 1.21017 0.95815 0.86387 0.99755 1.20340 0.93400 0.96939 1.03509 1.17570 0.90599 0.82023 1.25425 1.84780 1.76604 1.24073 1.30648 1.22189 0.75015 0.88268 0.82802 1.90852 1.46626 1.64725 1.36331 1.21972 1.06260 0.92057 0.99636 1.23763 0.90442 0.95190 0.98069 1.20470 0.95474 0.91985 1.00599 1.22234 0.98644 0.95995 1.01910 1.22594 0.85888 0.95755 0.97329 1.87954 1.20374 1.73569 1.48355 1.22591 0.90961 0.90386 0.97628 1.22231 0.96684 0.98067 1.01762 0.91245 0.90816 0.91010 0.92503 0.92725 0.92146 0.89697 0.90279 0.91307 0.84395 0.85242 0.89706 0.90371 0.90192 0.88556 0.92967 0.92977 0.88578 0.90379 0.90226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.04 10.44 36.01 0.38 -0.66 16 2 C 0.06 1.20 7.22 -82.29 -0.59 0.61 16 3 N -0.28 -6.65 12.57 33.73 0.42 -6.22 16 4 N -0.32 -7.63 3.62 -58.03 -0.21 -7.84 16 5 C 0.26 6.67 6.01 -5.19 -0.03 6.64 16 6 C -0.54 -14.81 9.39 -34.44 -0.32 -15.13 16 7 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 8 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 9 N -0.89 -24.95 13.29 55.43 0.74 -24.22 16 10 Si 0.91 20.98 29.54 -169.99 -5.02 15.96 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 13 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 14 C 0.10 2.23 6.97 -81.77 -0.57 1.66 16 15 C -0.08 -1.48 10.10 36.01 0.36 -1.12 16 16 C -0.10 -2.10 5.35 -39.78 -0.21 -2.31 16 17 O -0.25 -4.35 10.14 -25.71 -0.26 -4.61 16 18 C 0.47 7.40 7.85 34.25 0.27 7.66 16 19 O -0.50 -9.45 15.99 -19.31 -0.31 -9.76 16 20 C -0.18 -1.90 9.76 -37.85 -0.37 -2.27 16 21 C -0.06 -0.50 8.36 -36.10 -0.30 -0.80 16 22 C -0.07 -0.43 2.57 -91.59 -0.24 -0.66 16 23 C -0.15 -0.91 5.40 -26.59 -0.14 -1.06 16 24 C 0.06 0.36 6.84 37.20 0.25 0.61 16 25 O -0.38 -3.02 10.77 -35.23 -0.38 -3.40 16 26 C 0.06 0.35 6.84 37.21 0.25 0.61 16 27 C -0.15 -0.89 5.41 -26.59 -0.14 -1.03 16 28 H 0.07 1.01 8.14 -51.94 -0.42 0.59 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.06 1.57 8.14 -51.93 -0.42 1.14 16 32 H 0.06 1.40 7.09 -51.93 -0.37 1.03 16 33 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 34 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 35 H 0.08 1.40 7.12 -51.93 -0.37 1.03 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.14 1.11 7.87 -52.48 -0.41 0.70 16 38 H 0.13 1.32 7.49 -52.48 -0.39 0.93 16 39 H 0.08 0.46 7.81 -51.93 -0.41 0.05 16 40 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 44 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 45 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 47 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 398.69 15.07 6.01 6.01 Total: -1.00 -33.04 398.69 -7.93 -40.97 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -7.41 Total: -1.33 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: -1.51 Total: -5.56 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: 0.95 Total: -38.28 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: -0.95 Total: -17.77 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.04 -7.93 -40.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338369721.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.058 kcal (2) G-P(sol) polarization free energy of solvation -33.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds