Wall clock time and date at job start Tue Mar 31 2020 20:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30851 * 125.82970 * 2 1 4 4 N 1.40073 * 108.33226 * 180.27727 * 3 2 1 5 5 C 1.46505 * 126.05653 * 179.75482 * 4 3 2 6 6 C 1.50699 * 109.46920 * 269.95700 * 5 4 3 7 7 H 1.08001 * 120.00485 * 0.02562 * 6 5 4 8 8 C 1.37881 * 119.99986 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99728 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00075 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47001 * 90.00649 * 10 8 6 12 12 H 1.48500 * 109.47182 * 209.99968 * 10 8 6 13 13 H 1.48496 * 109.47240 * 330.00277 * 10 8 6 14 14 C 1.35773 * 107.87772 * 359.72105 * 4 3 2 15 15 C 1.50705 * 126.21106 * 179.97438 * 14 4 3 16 16 C 1.35656 * 107.58248 * 359.97438 * 14 4 3 17 17 O 1.36180 * 126.06500 * 180.02562 * 16 14 4 18 18 C 1.34752 * 117.00270 * 89.99922 * 17 16 14 19 19 O 1.21556 * 119.99534 * 359.97438 * 18 17 16 20 20 C 1.46940 * 119.99971 * 179.97438 * 18 17 16 21 21 C 1.33086 * 120.00308 * 179.97438 * 20 18 17 22 22 C 1.50697 * 120.00272 * 180.02562 * 21 20 18 23 23 C 1.53175 * 109.54085 * 120.00659 * 22 21 20 24 24 C 1.53092 * 109.16344 * 176.84900 * 23 22 21 25 25 O 1.42905 * 109.41215 * 302.38824 * 24 23 22 26 26 C 1.42905 * 114.09831 * 61.16158 * 25 24 23 27 27 C 1.53098 * 109.41155 * 298.83847 * 26 25 24 28 28 H 1.08989 * 109.47215 * 270.18815 * 1 2 3 29 29 H 1.09001 * 109.46828 * 30.19053 * 1 2 3 30 30 H 1.08998 * 109.46573 * 150.18631 * 1 2 3 31 31 H 1.08997 * 109.47727 * 29.96133 * 5 4 3 32 32 H 1.09005 * 109.47120 * 149.96169 * 5 4 3 33 33 H 0.97009 * 119.99946 * 179.97438 * 9 8 6 34 34 H 1.08994 * 109.47085 * 269.99980 * 15 14 4 35 35 H 1.09004 * 109.47021 * 30.00323 * 15 14 4 36 36 H 1.09002 * 109.47086 * 150.00158 * 15 14 4 37 37 H 1.08006 * 120.00263 * 0.02562 * 20 18 17 38 38 H 1.08006 * 119.99430 * 0.02562 * 21 20 18 39 39 H 1.08996 * 109.54186 * 359.83024 * 22 21 20 40 40 H 1.09004 * 109.52714 * 56.93920 * 23 22 21 41 41 H 1.09001 * 109.57654 * 296.78651 * 23 22 21 42 42 H 1.08997 * 109.48111 * 182.40965 * 24 23 22 43 43 H 1.09000 * 109.48212 * 62.37239 * 24 23 22 44 44 H 1.09000 * 109.47932 * 58.81878 * 26 25 24 45 45 H 1.08993 * 109.48024 * 178.86013 * 26 25 24 46 46 H 1.08996 * 109.52270 * 297.70307 * 27 26 25 47 47 H 1.08995 * 109.57012 * 177.54155 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2730 1.0609 0.0000 4 7 3.6089 0.6398 -0.0064 5 6 4.7874 1.5101 -0.0137 6 6 5.1847 1.8059 -1.4369 7 1 4.6160 1.3878 -2.2544 8 6 6.2736 2.6111 -1.6956 9 7 6.9658 3.1207 -0.7002 10 14 6.7664 2.9772 -3.4598 11 1 6.0648 4.2001 -3.9262 12 1 8.2342 3.1918 -3.5294 13 1 6.3922 1.8308 -4.3264 14 6 3.6179 -0.7179 -0.0040 15 6 4.8398 -1.6002 -0.0096 16 6 2.3275 -1.1363 0.0043 17 8 1.9044 -2.4307 0.0096 18 6 1.7212 -3.0096 1.2126 19 8 1.9332 -2.3781 2.2294 20 6 1.2652 -4.4040 1.2951 21 6 1.0847 -4.9759 2.4832 22 6 0.6176 -6.4061 2.5678 23 6 1.6631 -7.2434 3.3109 24 6 1.1451 -8.6762 3.4611 25 8 -0.1046 -8.6593 4.1540 26 6 -1.1343 -7.9306 3.4826 27 6 -0.7078 -6.4678 3.3332 28 1 -0.3633 0.0034 1.0275 29 1 -0.3633 0.8883 -0.5168 30 1 -0.3632 -0.8917 -0.5109 31 1 4.5535 2.4428 0.4996 32 1 5.6109 1.0109 0.4971 33 1 7.7321 3.6869 -0.8822 34 1 5.1283 -1.8147 -1.0385 35 1 5.6583 -1.0903 0.4987 36 1 4.6164 -2.5335 0.5073 37 1 1.0773 -4.9651 0.3916 38 1 1.2730 -4.4149 3.3867 39 1 0.4787 -6.8044 1.5628 40 1 1.8393 -6.8145 4.2974 41 1 2.5947 -7.2503 2.7451 42 1 1.8664 -9.2661 4.0266 43 1 1.0077 -9.1184 2.4743 44 1 -1.3014 -8.3630 2.4961 45 1 -2.0549 -7.9833 4.0636 46 1 -0.5796 -6.0233 4.3201 47 1 -1.4721 -5.9191 2.7830 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338369721.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:57 Heat of formation + Delta-G solvation = -70.848237 kcal Electronic energy + Delta-G solvation = -28113.531996 eV Core-core repulsion = 24069.431962 eV Total energy + Delta-G solvation = -4044.100033 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.70106 -41.15153 -40.31691 -38.01826 -36.36590 -35.90845 -34.39249 -32.85633 -32.32074 -31.99993 -30.71496 -28.37706 -27.78324 -26.79336 -24.93582 -24.44281 -23.86097 -21.58169 -20.99134 -20.84929 -20.56429 -18.97528 -18.89320 -18.17700 -17.27463 -17.00115 -16.90209 -16.63504 -16.28541 -16.05789 -15.64404 -15.56688 -14.98493 -14.86442 -14.76513 -14.54814 -14.26886 -14.18511 -13.76692 -13.68945 -13.45497 -13.36689 -13.29602 -13.21575 -13.17354 -12.90462 -12.72645 -12.49472 -12.29116 -12.25977 -12.07356 -11.94370 -11.87474 -11.72853 -11.34038 -11.18079 -10.78138 -10.51905 -10.48822 -10.09796 -9.38705 -8.38649 -6.56383 0.04804 0.75118 1.19153 1.36563 1.37755 1.48490 1.61819 1.89822 2.23040 2.31743 2.92316 3.02670 3.44853 3.60119 3.73997 3.75293 3.87267 3.96384 4.07899 4.09419 4.14072 4.34132 4.35668 4.41896 4.49668 4.56723 4.58635 4.66894 4.72994 4.73545 4.77130 4.77432 4.81295 4.85411 4.91097 4.96451 5.02547 5.15109 5.16821 5.19188 5.25042 5.41810 5.45132 5.47449 5.72209 5.76435 6.02341 6.32152 6.52448 6.73787 6.85670 7.14724 8.68833 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.023791 B = 0.002074 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.617641 B =13496.215109 C =14108.949567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.057 3.943 3 N -0.323 5.323 4 N -0.342 5.342 5 C 0.274 3.726 6 C -0.555 4.555 7 H 0.053 0.947 8 C 0.022 3.978 9 N -0.918 5.918 10 Si 0.976 3.024 11 H -0.274 1.274 12 H -0.270 1.270 13 H -0.267 1.267 14 C 0.088 3.912 15 C -0.080 4.080 16 C -0.103 4.103 17 O -0.246 6.246 18 C 0.472 3.528 19 O -0.539 6.539 20 C -0.190 4.190 21 C -0.028 4.028 22 C -0.063 4.063 23 C -0.149 4.149 24 C 0.059 3.941 25 O -0.408 6.408 26 C 0.059 3.941 27 C -0.148 4.148 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.027 0.973 32 H 0.050 0.950 33 H 0.275 0.725 34 H 0.097 0.903 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.171 0.829 38 H 0.112 0.888 39 H 0.106 0.894 40 H 0.065 0.935 41 H 0.088 0.912 42 H 0.103 0.897 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.103 0.897 46 H 0.066 0.934 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.883 -25.452 4.760 29.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.109 4.109 3 N -0.147 5.147 4 N -0.123 5.123 5 C 0.156 3.844 6 C -0.593 4.593 7 H 0.071 0.929 8 C -0.179 4.179 9 N -0.556 5.556 10 Si 0.799 3.201 11 H -0.200 1.200 12 H -0.195 1.195 13 H -0.191 1.191 14 C -0.044 4.044 15 C -0.138 4.138 16 C -0.157 4.157 17 O -0.158 6.158 18 C 0.321 3.679 19 O -0.430 6.430 20 C -0.208 4.208 21 C -0.047 4.047 22 C -0.081 4.081 23 C -0.187 4.187 24 C -0.017 4.017 25 O -0.327 6.327 26 C -0.018 4.018 27 C -0.186 4.186 28 H 0.099 0.901 29 H 0.102 0.898 30 H 0.115 0.885 31 H 0.045 0.955 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.115 0.885 35 H 0.091 0.909 36 H 0.110 0.890 37 H 0.188 0.812 38 H 0.130 0.870 39 H 0.125 0.875 40 H 0.084 0.916 41 H 0.106 0.894 42 H 0.121 0.879 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.121 0.879 46 H 0.084 0.916 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -13.517 -23.856 5.289 27.925 hybrid contribution 0.737 0.503 -0.659 1.109 sum -12.780 -23.353 4.630 27.021 Atomic orbital electron populations 1.20253 0.83807 1.04640 1.03557 1.23090 0.98976 0.89322 0.99510 1.77276 0.87598 1.23596 1.26239 1.49089 1.05751 1.04428 1.53044 1.19339 0.78269 0.88466 0.98328 1.21396 1.13922 1.32650 0.91339 0.92867 1.25795 0.95238 0.94297 1.02618 1.70011 1.19401 1.32849 1.33320 0.85285 0.77807 0.78773 0.78219 1.19957 1.19460 1.19108 1.21677 0.97755 0.85741 0.99249 1.20438 0.91817 0.97057 1.04486 1.17646 0.90247 0.83394 1.24399 1.84776 1.76589 1.22430 1.31966 1.23044 0.73803 0.89677 0.81402 1.90847 1.48810 1.66013 1.37304 1.21999 1.08085 0.89276 1.01475 1.23925 0.87710 0.96194 0.96891 1.20537 0.95626 0.89985 1.01982 1.22230 0.98932 0.96194 1.01354 1.22701 0.85422 0.95521 0.98092 1.87928 1.21320 1.73966 1.49493 1.22711 0.90770 0.89859 0.98432 1.22225 0.96651 0.98529 1.01207 0.90051 0.89759 0.88526 0.95498 0.93190 0.91616 0.88494 0.90873 0.89047 0.81153 0.86963 0.87545 0.91583 0.89393 0.87935 0.91523 0.91526 0.87853 0.91565 0.89227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.92 10.44 71.24 0.74 -1.18 16 2 C 0.06 2.38 7.22 43.17 0.31 2.69 16 3 N -0.32 -15.92 12.57 -47.20 -0.59 -16.51 16 4 N -0.34 -17.23 3.62 -337.49 -1.22 -18.45 16 5 C 0.27 14.92 6.01 85.63 0.51 15.43 16 6 C -0.56 -31.37 9.39 25.60 0.24 -31.13 16 7 H 0.05 3.08 7.81 -2.91 -0.02 3.05 16 8 C 0.02 1.19 5.46 84.66 0.46 1.66 16 9 N -0.92 -52.27 13.29 21.45 0.28 -51.98 16 10 Si 0.98 43.02 29.54 68.60 2.03 45.05 16 11 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 12 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 13 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 14 C 0.09 3.84 6.97 41.35 0.29 4.13 16 15 C -0.08 -2.83 10.10 71.24 0.72 -2.11 16 16 C -0.10 -4.22 5.35 22.14 0.12 -4.10 16 17 O -0.25 -8.24 10.14 -3.25 -0.03 -8.28 16 18 C 0.47 14.20 7.85 70.10 0.55 14.75 16 19 O -0.54 -20.46 15.99 19.66 0.31 -20.14 16 20 C -0.19 -3.49 9.76 23.40 0.23 -3.26 16 21 C -0.03 -0.44 8.36 24.53 0.21 -0.24 16 22 C -0.06 -0.62 2.57 -11.42 -0.03 -0.65 16 23 C -0.15 -1.49 5.40 30.68 0.17 -1.32 16 24 C 0.06 0.55 6.84 72.01 0.49 1.04 16 25 O -0.41 -5.62 10.77 -148.98 -1.60 -7.22 16 26 C 0.06 0.53 6.84 72.01 0.49 1.02 16 27 C -0.15 -1.41 5.41 30.69 0.17 -1.25 16 28 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.05 2.70 7.09 -2.38 -0.02 2.68 16 33 H 0.27 14.55 8.31 -92.70 -0.77 13.78 16 34 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 35 H 0.07 2.65 7.12 -2.38 -0.02 2.63 16 36 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 37 H 0.17 2.02 7.87 -2.91 -0.02 2.00 16 38 H 0.11 2.20 7.49 -2.91 -0.02 2.17 16 39 H 0.11 0.68 7.81 -2.39 -0.02 0.66 16 40 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 44 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 45 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -73.77 398.69 5.80 -67.97 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: 0.96 Total: 14.09 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: 5.67 Total: -4.51 kcal Atomic # 7 Polarization: -85.42 SS G_CDS: -1.53 Total: -86.95 kcal Atomic # 8 Polarization: -34.32 SS G_CDS: -1.32 Total: -35.65 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -73.77 5.80 -67.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338369721.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.879 kcal (2) G-P(sol) polarization free energy of solvation -73.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds