Wall clock time and date at job start Tue Mar 31 2020 20:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38086 * 119.58288 * 2 1 4 4 C 1.38792 * 119.28360 * 179.70825 * 3 2 1 5 5 C 1.50706 * 120.75662 * 180.29400 * 4 3 2 6 6 C 1.38415 * 118.48712 * 0.53080 * 4 3 2 7 7 C 1.50697 * 120.44317 * 179.74090 * 6 4 3 8 8 C 1.50699 * 109.47279 * 269.71963 * 7 6 4 9 9 O 1.20834 * 119.99743 * 0.02562 * 8 7 6 10 10 O 1.34220 * 120.00501 * 180.02562 * 8 7 6 11 11 C 1.45204 * 117.00384 * 180.02562 * 10 8 7 12 12 C 1.53034 * 109.46058 * 270.02839 * 11 10 8 13 13 C 1.53190 * 109.31254 * 178.59849 * 12 11 10 14 14 N 1.46927 * 108.76519 * 54.65558 * 13 12 11 15 15 C 1.36940 * 120.62789 * 126.40418 * 14 13 12 16 16 H 1.07997 * 120.00661 * 331.82164 * 15 14 13 17 17 C 1.38817 * 119.99465 * 151.82644 * 15 14 13 18 18 N 1.31613 * 120.00197 * 343.07310 * 17 15 14 19 19 Si 1.86803 * 119.99769 * 163.07826 * 17 15 14 20 20 H 1.48503 * 109.46878 * 59.99916 * 19 17 15 21 21 H 1.48503 * 109.46873 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47290 * 299.99917 * 19 17 15 23 23 C 1.46920 * 118.74075 * 306.38251 * 14 13 12 24 24 C 1.53044 * 109.46084 * 149.97114 * 11 10 8 25 25 C 1.38883 * 119.11277 * 359.46355 * 6 4 3 26 26 O 1.35673 * 119.68469 * 180.25353 * 25 6 4 27 27 N 1.31939 * 119.58043 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.46831 * 270.02547 * 1 2 3 29 29 H 1.08996 * 109.47253 * 30.02232 * 1 2 3 30 30 H 1.08993 * 109.47292 * 150.02698 * 1 2 3 31 31 H 1.07994 * 120.35725 * 359.97216 * 3 2 1 32 32 H 1.09000 * 109.47007 * 270.24437 * 5 4 3 33 33 H 1.09004 * 109.47090 * 30.23854 * 5 4 3 34 34 H 1.08994 * 109.47091 * 150.23940 * 5 4 3 35 35 H 1.09004 * 109.47040 * 149.72268 * 7 6 4 36 36 H 1.08997 * 109.47124 * 29.72332 * 7 6 4 37 37 H 1.08999 * 109.45503 * 29.99995 * 11 10 8 38 38 H 1.09002 * 109.49937 * 298.56616 * 12 11 10 39 39 H 1.09006 * 109.49961 * 58.66038 * 12 11 10 40 40 H 1.09000 * 109.60055 * 294.86497 * 13 12 11 41 41 H 1.09007 * 109.70515 * 174.50363 * 13 12 11 42 42 H 0.97003 * 119.99949 * 180.02562 * 18 17 15 43 43 H 1.08999 * 109.58627 * 293.82795 * 23 14 13 44 44 H 1.08999 * 109.70855 * 173.46192 * 23 14 13 45 45 H 1.09004 * 109.49891 * 301.33798 * 24 11 10 46 46 H 1.08999 * 109.49474 * 61.40640 * 24 11 10 47 47 H 0.96701 * 114.00408 * 89.99909 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1887 1.2009 0.0000 4 6 3.5766 1.1936 0.0062 5 6 4.3540 2.4847 0.0130 6 6 4.2305 -0.0264 0.0009 7 6 5.7363 -0.0856 0.0013 8 6 6.2387 -0.1058 -1.4193 9 8 5.4543 -0.0747 -2.3380 10 8 7.5573 -0.1582 -1.6642 11 6 7.9691 -0.1742 -3.0566 12 6 8.0556 -1.6215 -3.5461 13 6 8.4562 -1.6332 -5.0246 14 7 9.7001 -0.8675 -5.1833 15 6 10.7874 -1.4235 -5.8029 16 1 10.9362 -2.4928 -5.7758 17 6 11.6984 -0.6125 -6.4657 18 7 11.3681 0.6194 -6.7907 19 14 13.3931 -1.2697 -6.8966 20 1 13.2544 -2.4528 -7.7833 21 1 14.1696 -0.2152 -7.5968 22 1 14.1022 -1.6637 -5.6527 23 6 9.7550 0.5062 -4.6651 24 6 9.3395 0.4939 -3.1906 25 6 3.4802 -1.1951 0.0010 26 8 4.1092 -2.3972 0.0010 27 7 2.1583 -1.1474 0.0005 28 1 -0.3633 0.0005 1.0277 29 1 -0.3633 0.8897 -0.5142 30 1 -0.3633 -0.8902 -0.5134 31 1 1.6478 2.1355 -0.0005 32 1 4.5423 2.8008 -1.0130 33 1 3.7785 3.2526 0.5300 34 1 5.3034 2.3344 0.5269 35 1 6.0642 -0.9891 0.5155 36 1 6.1342 0.7895 0.5151 37 1 7.2398 0.3693 -3.6571 38 1 8.8027 -2.1591 -2.9622 39 1 7.0852 -2.1040 -3.4285 40 1 7.6668 -1.1757 -5.6210 41 1 8.6147 -2.6600 -5.3544 42 1 12.0046 1.1860 -7.2542 43 1 9.0715 1.1382 -5.2320 44 1 10.7702 0.8928 -4.7553 45 1 9.2831 1.5175 -2.8200 46 1 10.0743 -0.0634 -2.6097 47 1 4.2916 -2.7457 0.8844 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345049271.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:42 Heat of formation + Delta-G solvation = -80.085610 kcal Electronic energy + Delta-G solvation = -29014.067775 eV Core-core repulsion = 24969.567180 eV Total energy + Delta-G solvation = -4044.500596 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.20471 -40.10077 -37.57846 -37.48743 -35.86361 -35.04071 -32.72433 -32.22143 -30.81789 -30.26578 -29.57840 -28.07577 -26.53491 -25.06070 -23.21950 -22.43880 -22.13785 -21.32736 -20.31220 -19.30274 -18.63516 -17.57980 -17.53978 -17.00054 -16.24474 -15.74954 -15.62861 -15.49270 -14.82128 -14.44384 -14.00973 -13.82931 -13.69234 -13.57736 -13.49683 -13.24776 -13.14900 -13.01585 -12.71686 -12.66143 -12.43341 -12.23496 -12.14199 -11.83489 -11.79242 -11.51599 -11.20391 -11.04539 -10.73142 -10.72688 -10.45806 -10.26629 -10.18453 -9.89969 -9.74450 -9.66723 -9.63031 -9.43178 -8.93665 -8.49393 -6.72836 -5.81937 -3.24499 0.67592 0.91270 2.40012 2.87301 3.23986 3.38262 3.43615 3.45190 3.48129 4.09954 4.28114 4.47981 4.48796 4.52150 4.82112 4.92671 4.99073 5.06363 5.09951 5.22520 5.27129 5.27425 5.30601 5.37503 5.42996 5.44150 5.54145 5.55214 5.74128 5.75391 5.76928 5.97113 6.02218 6.24057 6.26423 6.38848 6.45165 6.50988 6.58863 6.74202 6.88167 6.98413 7.23632 7.27878 7.57265 7.69221 7.77477 8.00768 8.41768 9.17692 9.80380 10.37352 11.27368 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.026909 B = 0.002329 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.298613 B =12020.043489 C =12343.880464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.154 3.846 3 C -0.184 4.184 4 C -0.008 4.008 5 C -0.124 4.124 6 C -0.149 4.149 7 C -0.067 4.067 8 C 0.461 3.539 9 O -0.501 6.501 10 O -0.358 6.358 11 C 0.100 3.900 12 C -0.146 4.146 13 C 0.149 3.851 14 N -0.592 5.592 15 C -0.254 4.254 16 H 0.067 0.933 17 C 0.002 3.998 18 N -0.904 5.904 19 Si 0.905 3.095 20 H -0.282 1.282 21 H -0.290 1.290 22 H -0.283 1.283 23 C 0.174 3.826 24 C -0.135 4.135 25 C 0.337 3.663 26 O -0.476 6.476 27 N -0.508 5.508 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.139 0.861 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.055 0.945 40 H 0.021 0.979 41 H 0.061 0.939 42 H 0.255 0.745 43 H 0.021 0.979 44 H 0.096 0.904 45 H 0.057 0.943 46 H 0.067 0.933 47 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.395 3.069 20.001 26.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.017 3.983 3 C -0.204 4.204 4 C -0.015 4.015 5 C -0.181 4.181 6 C -0.152 4.152 7 C -0.105 4.105 8 C 0.303 3.697 9 O -0.389 6.389 10 O -0.275 6.275 11 C 0.046 3.954 12 C -0.185 4.185 13 C 0.022 3.978 14 N -0.315 5.315 15 C -0.384 4.384 16 H 0.084 0.916 17 C -0.196 4.196 18 N -0.548 5.548 19 Si 0.735 3.265 20 H -0.208 1.208 21 H -0.216 1.216 22 H -0.210 1.210 23 C 0.048 3.952 24 C -0.174 4.174 25 C 0.158 3.842 26 O -0.282 6.282 27 N -0.227 5.227 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.157 0.843 32 H 0.102 0.898 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.132 0.868 36 H 0.133 0.867 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.039 0.961 41 H 0.079 0.921 42 H 0.065 0.935 43 H 0.039 0.961 44 H 0.115 0.885 45 H 0.075 0.925 46 H 0.086 0.914 47 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -17.929 2.437 18.960 26.208 hybrid contribution 1.317 0.260 0.068 1.344 sum -16.612 2.697 19.028 25.402 Atomic orbital electron populations 1.20749 0.88430 1.03820 1.03171 1.21006 0.96784 0.87180 0.93302 1.21790 0.93797 0.99448 1.05357 1.20083 0.93826 0.94805 0.92797 1.20955 1.00004 0.93384 1.03718 1.20135 0.95158 0.93128 1.06785 1.20076 0.91117 1.06557 0.92777 1.23212 0.81642 0.73011 0.91822 1.90675 1.56789 1.44798 1.46622 1.86531 1.24449 1.83042 1.33464 1.22937 0.97314 0.98228 0.76931 1.22451 1.00822 0.94910 1.00331 1.20861 0.89237 0.96585 0.91094 1.44111 1.09244 1.12091 1.66061 1.19160 0.99768 0.92414 1.27021 0.91554 1.25072 0.99979 0.96875 0.97696 1.70008 1.34433 1.08160 1.42231 0.86332 0.84204 0.77893 0.78113 1.20833 1.21610 1.20955 1.20805 1.02092 0.86225 0.86083 1.22463 0.93597 0.98933 1.02427 1.18841 0.86647 0.84738 0.93977 1.84867 1.76474 1.33386 1.33521 1.66996 1.09379 1.30692 1.15674 0.90196 0.90390 0.90266 0.84321 0.89754 0.90488 0.90567 0.86764 0.86679 0.90466 0.91368 0.92624 0.96105 0.92077 0.93473 0.96054 0.88547 0.92462 0.91446 0.74416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.72 10.17 36.01 0.37 -0.36 16 2 C 0.15 1.61 6.78 -82.60 -0.56 1.05 16 3 C -0.18 -1.71 9.44 -39.43 -0.37 -2.08 16 4 C -0.01 -0.08 5.91 -104.35 -0.62 -0.69 16 5 C -0.12 -0.95 9.67 36.01 0.35 -0.60 16 6 C -0.15 -1.70 4.41 -104.32 -0.46 -2.16 16 7 C -0.07 -0.71 5.37 -29.04 -0.16 -0.86 16 8 C 0.46 7.13 7.92 36.01 0.29 7.42 16 9 O -0.50 -9.51 15.25 -18.76 -0.29 -9.79 16 10 O -0.36 -5.99 9.88 -39.23 -0.39 -6.37 16 11 C 0.10 1.90 2.42 -26.69 -0.06 1.83 16 12 C -0.15 -2.85 5.71 -26.62 -0.15 -3.00 16 13 C 0.15 3.31 6.52 -3.71 -0.02 3.28 16 14 N -0.59 -15.14 2.99 -172.32 -0.52 -15.65 16 15 C -0.25 -7.02 9.58 -15.06 -0.14 -7.16 16 16 H 0.07 1.79 7.88 -52.49 -0.41 1.38 16 17 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 18 N -0.90 -26.18 11.19 55.49 0.62 -25.56 16 19 Si 0.90 21.65 29.59 -169.99 -5.03 16.62 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 C 0.17 4.18 5.30 -3.71 -0.02 4.16 16 24 C -0.13 -2.66 5.74 -26.61 -0.15 -2.81 16 25 C 0.34 4.26 7.72 -17.12 -0.13 4.13 16 26 O -0.48 -5.47 12.62 -18.72 -0.24 -5.71 16 27 N -0.51 -6.56 10.30 -9.55 -0.10 -6.66 16 28 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.40 8.08 -51.93 -0.42 -0.02 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.14 0.88 8.06 -52.49 -0.42 0.45 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.08 0.42 8.10 -51.93 -0.42 -0.01 16 34 H 0.08 0.50 6.07 -51.93 -0.32 0.18 16 35 H 0.11 0.96 7.55 -51.93 -0.39 0.57 16 36 H 0.12 0.89 6.06 -51.93 -0.31 0.57 16 37 H 0.08 1.58 7.16 -51.93 -0.37 1.21 16 38 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.06 1.31 7.93 -51.93 -0.41 0.90 16 42 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 43 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.10 2.54 6.07 -51.93 -0.31 2.23 16 45 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 46 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 47 H 0.40 2.23 9.06 45.56 0.41 2.64 16 LS Contribution 384.34 15.07 5.79 5.79 Total: -1.00 -35.35 384.34 -8.41 -43.75 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -6.32 Total: 1.45 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -1.94 Total: 2.13 kcal Atomic # 7 Polarization: -47.88 SS G_CDS: 0.01 Total: -47.87 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -0.91 Total: -21.88 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.35 -8.41 -43.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345049271.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.332 kcal (2) G-P(sol) polarization free energy of solvation -35.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds