Wall clock time and date at job start Tue Mar 31 2020 20:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38086 * 119.58288 * 2 1 4 4 C 1.38792 * 119.28360 * 179.70825 * 3 2 1 5 5 C 1.50706 * 120.75662 * 180.29400 * 4 3 2 6 6 C 1.38415 * 118.48712 * 0.53080 * 4 3 2 7 7 C 1.50697 * 120.44317 * 179.74090 * 6 4 3 8 8 C 1.50699 * 109.47279 * 269.71963 * 7 6 4 9 9 O 1.20834 * 119.99743 * 0.02562 * 8 7 6 10 10 O 1.34220 * 120.00501 * 180.02562 * 8 7 6 11 11 C 1.45204 * 117.00384 * 180.02562 * 10 8 7 12 12 C 1.53034 * 109.46058 * 270.02839 * 11 10 8 13 13 C 1.53190 * 109.31254 * 178.59849 * 12 11 10 14 14 N 1.46927 * 108.76519 * 54.65558 * 13 12 11 15 15 C 1.36940 * 120.62789 * 126.40418 * 14 13 12 16 16 H 1.07997 * 120.00661 * 331.82164 * 15 14 13 17 17 C 1.38817 * 119.99465 * 151.82644 * 15 14 13 18 18 N 1.31613 * 120.00197 * 343.07310 * 17 15 14 19 19 Si 1.86803 * 119.99769 * 163.07826 * 17 15 14 20 20 H 1.48503 * 109.46878 * 59.99916 * 19 17 15 21 21 H 1.48503 * 109.46873 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47290 * 299.99917 * 19 17 15 23 23 C 1.46920 * 118.74075 * 306.38251 * 14 13 12 24 24 C 1.53044 * 109.46084 * 149.97114 * 11 10 8 25 25 C 1.38883 * 119.11277 * 359.46355 * 6 4 3 26 26 O 1.35673 * 119.68469 * 180.25353 * 25 6 4 27 27 N 1.31939 * 119.58043 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.46831 * 270.02547 * 1 2 3 29 29 H 1.08996 * 109.47253 * 30.02232 * 1 2 3 30 30 H 1.08993 * 109.47292 * 150.02698 * 1 2 3 31 31 H 1.07994 * 120.35725 * 359.97216 * 3 2 1 32 32 H 1.09000 * 109.47007 * 270.24437 * 5 4 3 33 33 H 1.09004 * 109.47090 * 30.23854 * 5 4 3 34 34 H 1.08994 * 109.47091 * 150.23940 * 5 4 3 35 35 H 1.09004 * 109.47040 * 149.72268 * 7 6 4 36 36 H 1.08997 * 109.47124 * 29.72332 * 7 6 4 37 37 H 1.08999 * 109.45503 * 29.99995 * 11 10 8 38 38 H 1.09002 * 109.49937 * 298.56616 * 12 11 10 39 39 H 1.09006 * 109.49961 * 58.66038 * 12 11 10 40 40 H 1.09000 * 109.60055 * 294.86497 * 13 12 11 41 41 H 1.09007 * 109.70515 * 174.50363 * 13 12 11 42 42 H 0.97003 * 119.99949 * 180.02562 * 18 17 15 43 43 H 1.08999 * 109.58627 * 293.82795 * 23 14 13 44 44 H 1.08999 * 109.70855 * 173.46192 * 23 14 13 45 45 H 1.09004 * 109.49891 * 301.33798 * 24 11 10 46 46 H 1.08999 * 109.49474 * 61.40640 * 24 11 10 47 47 H 0.96701 * 114.00408 * 89.99909 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1887 1.2009 0.0000 4 6 3.5766 1.1936 0.0062 5 6 4.3540 2.4847 0.0130 6 6 4.2305 -0.0264 0.0009 7 6 5.7363 -0.0856 0.0013 8 6 6.2387 -0.1058 -1.4193 9 8 5.4543 -0.0747 -2.3380 10 8 7.5573 -0.1582 -1.6642 11 6 7.9691 -0.1742 -3.0566 12 6 8.0556 -1.6215 -3.5461 13 6 8.4562 -1.6332 -5.0246 14 7 9.7001 -0.8675 -5.1833 15 6 10.7874 -1.4235 -5.8029 16 1 10.9362 -2.4928 -5.7758 17 6 11.6984 -0.6125 -6.4657 18 7 11.3681 0.6194 -6.7907 19 14 13.3931 -1.2697 -6.8966 20 1 13.2544 -2.4528 -7.7833 21 1 14.1696 -0.2152 -7.5968 22 1 14.1022 -1.6637 -5.6527 23 6 9.7550 0.5062 -4.6651 24 6 9.3395 0.4939 -3.1906 25 6 3.4802 -1.1951 0.0010 26 8 4.1092 -2.3972 0.0010 27 7 2.1583 -1.1474 0.0005 28 1 -0.3633 0.0005 1.0277 29 1 -0.3633 0.8897 -0.5142 30 1 -0.3633 -0.8902 -0.5134 31 1 1.6478 2.1355 -0.0005 32 1 4.5423 2.8008 -1.0130 33 1 3.7785 3.2526 0.5300 34 1 5.3034 2.3344 0.5269 35 1 6.0642 -0.9891 0.5155 36 1 6.1342 0.7895 0.5151 37 1 7.2398 0.3693 -3.6571 38 1 8.8027 -2.1591 -2.9622 39 1 7.0852 -2.1040 -3.4285 40 1 7.6668 -1.1757 -5.6210 41 1 8.6147 -2.6600 -5.3544 42 1 12.0046 1.1860 -7.2542 43 1 9.0715 1.1382 -5.2320 44 1 10.7702 0.8928 -4.7553 45 1 9.2831 1.5175 -2.8200 46 1 10.0743 -0.0634 -2.6097 47 1 4.2916 -2.7457 0.8844 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345049271.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:41 Heat of formation + Delta-G solvation = -104.461378 kcal Electronic energy + Delta-G solvation = -29015.124788 eV Core-core repulsion = 24969.567180 eV Total energy + Delta-G solvation = -4045.557608 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.11564 -41.29705 -39.14350 -38.33474 -37.35387 -35.86785 -34.61558 -33.00325 -32.23854 -31.63554 -31.20349 -28.72328 -27.57466 -26.74726 -24.39165 -23.94932 -23.63871 -22.36141 -21.40017 -21.05116 -19.43105 -18.90486 -18.78981 -18.36065 -17.49910 -17.05437 -16.81091 -16.50845 -16.30821 -15.70978 -15.44414 -15.11804 -14.95247 -14.78107 -14.56281 -14.48290 -14.19209 -14.11096 -13.86713 -13.85091 -13.31696 -13.26023 -13.07535 -12.98767 -12.85934 -12.67384 -12.59467 -12.51988 -12.51187 -12.46299 -12.17180 -12.00582 -11.89266 -11.61002 -11.43256 -11.08545 -10.57192 -10.48923 -10.43512 -9.69872 -8.78114 -7.91880 -5.38333 -0.09865 0.15999 1.19653 1.48114 1.50151 1.57526 1.69142 2.49830 2.52495 2.67157 3.24552 3.33694 3.53781 3.64691 3.70731 3.76163 3.80921 3.82758 3.87230 4.12839 4.18649 4.32501 4.33852 4.43283 4.52489 4.53389 4.59344 4.69111 4.71374 4.77407 4.79793 4.82776 4.86793 4.93660 4.99360 5.01392 5.09042 5.17463 5.21373 5.28838 5.37644 5.50228 5.60793 5.63857 5.67985 6.34467 6.59400 6.74229 6.94105 7.09382 7.77111 8.30785 9.15853 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.026909 B = 0.002329 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.298613 B =12020.043489 C =12343.880464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.140 3.860 3 C -0.186 4.186 4 C -0.015 4.015 5 C -0.124 4.124 6 C -0.165 4.165 7 C -0.058 4.058 8 C 0.460 3.540 9 O -0.540 6.540 10 O -0.351 6.351 11 C 0.107 3.893 12 C -0.132 4.132 13 C 0.147 3.853 14 N -0.610 5.610 15 C -0.269 4.269 16 H 0.069 0.931 17 C -0.048 4.048 18 N -0.935 5.935 19 Si 0.972 3.028 20 H -0.276 1.276 21 H -0.293 1.293 22 H -0.275 1.275 23 C 0.180 3.820 24 C -0.120 4.120 25 C 0.318 3.682 26 O -0.494 6.494 27 N -0.541 5.541 28 H 0.097 0.903 29 H 0.099 0.901 30 H 0.067 0.933 31 H 0.170 0.830 32 H 0.070 0.930 33 H 0.102 0.898 34 H 0.088 0.912 35 H 0.138 0.862 36 H 0.149 0.851 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.010 0.990 41 H 0.065 0.935 42 H 0.253 0.747 43 H -0.001 1.001 44 H 0.070 0.930 45 H 0.080 0.920 46 H 0.070 0.930 47 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.662 3.503 22.182 28.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.003 3.997 3 C -0.205 4.205 4 C -0.023 4.023 5 C -0.180 4.180 6 C -0.169 4.169 7 C -0.095 4.095 8 C 0.304 3.696 9 O -0.429 6.429 10 O -0.268 6.268 11 C 0.053 3.947 12 C -0.171 4.171 13 C 0.021 3.979 14 N -0.333 5.333 15 C -0.399 4.399 16 H 0.086 0.914 17 C -0.244 4.244 18 N -0.581 5.581 19 Si 0.800 3.200 20 H -0.202 1.202 21 H -0.219 1.219 22 H -0.201 1.201 23 C 0.054 3.946 24 C -0.159 4.159 25 C 0.140 3.860 26 O -0.304 6.304 27 N -0.262 5.262 28 H 0.116 0.884 29 H 0.117 0.883 30 H 0.086 0.914 31 H 0.187 0.813 32 H 0.089 0.911 33 H 0.120 0.880 34 H 0.107 0.893 35 H 0.156 0.844 36 H 0.166 0.834 37 H 0.079 0.921 38 H 0.091 0.909 39 H 0.080 0.920 40 H 0.028 0.972 41 H 0.083 0.917 42 H 0.062 0.938 43 H 0.017 0.983 44 H 0.089 0.911 45 H 0.099 0.901 46 H 0.088 0.912 47 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -18.210 2.850 21.186 28.081 hybrid contribution 1.259 0.119 -0.598 1.399 sum -16.951 2.969 20.588 26.833 Atomic orbital electron populations 1.20844 0.86322 1.04300 1.04443 1.21637 0.98358 0.87116 0.92578 1.22168 0.93814 1.00296 1.04220 1.20493 0.94546 0.95358 0.91859 1.21025 1.00810 0.92796 1.03334 1.20262 0.95508 0.93335 1.07770 1.20220 0.90642 1.09224 0.89410 1.24240 0.80513 0.71309 0.93520 1.90669 1.57364 1.46609 1.48296 1.86534 1.25674 1.83269 1.31330 1.22567 0.96463 0.97384 0.78310 1.22248 1.01104 0.95553 0.98228 1.20931 0.87801 0.96218 0.92945 1.44366 1.09913 1.12667 1.66367 1.19489 1.00615 0.92753 1.26992 0.91359 1.25861 1.03413 0.97188 0.97922 1.70164 1.35406 1.09337 1.43156 0.85277 0.79634 0.77162 0.77964 1.20218 1.21869 1.20090 1.20604 1.00096 0.85290 0.88629 1.22173 0.93969 1.00616 0.99119 1.19114 0.86971 0.85326 0.94614 1.84802 1.76450 1.33474 1.35646 1.67018 1.09872 1.32212 1.17121 0.88427 0.88264 0.91373 0.81284 0.91094 0.87962 0.89293 0.84423 0.83393 0.92133 0.90857 0.91976 0.97213 0.91688 0.93820 0.98289 0.91123 0.90099 0.91163 0.72063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.25 10.17 71.24 0.72 -0.53 16 2 C 0.14 2.76 6.78 42.51 0.29 3.05 16 3 C -0.19 -3.06 9.44 22.37 0.21 -2.85 16 4 C -0.02 -0.27 5.91 -19.69 -0.12 -0.39 16 5 C -0.12 -1.55 9.67 71.24 0.69 -0.86 16 6 C -0.17 -3.54 4.41 -19.67 -0.09 -3.63 16 7 C -0.06 -1.07 5.37 29.10 0.16 -0.91 16 8 C 0.46 13.52 7.92 71.24 0.56 14.08 16 9 O -0.54 -20.29 15.25 21.94 0.33 -19.95 16 10 O -0.35 -11.10 9.88 -51.32 -0.51 -11.60 16 11 C 0.11 4.01 2.42 30.62 0.07 4.08 16 12 C -0.13 -5.08 5.71 30.67 0.18 -4.90 16 13 C 0.15 6.59 6.52 86.36 0.56 7.16 16 14 N -0.61 -31.60 2.99 -699.10 -2.09 -33.69 16 15 C -0.27 -14.95 9.58 84.03 0.81 -14.15 16 16 H 0.07 3.69 7.88 -2.91 -0.02 3.67 16 17 C -0.05 -2.70 4.92 84.86 0.42 -2.28 16 18 N -0.94 -55.26 11.19 21.65 0.24 -55.02 16 19 Si 0.97 44.69 29.59 68.60 2.03 46.72 16 20 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 21 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 22 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 23 C 0.18 8.81 5.30 86.36 0.46 9.26 16 24 C -0.12 -4.62 5.74 30.67 0.18 -4.45 16 25 C 0.32 7.88 7.72 84.78 0.65 8.53 16 26 O -0.49 -11.13 12.62 -89.90 -1.13 -12.27 16 27 N -0.54 -13.87 10.30 -296.98 -3.06 -16.92 16 28 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.10 0.77 8.08 -2.39 -0.02 0.75 16 30 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.17 1.59 8.06 -2.91 -0.02 1.56 16 32 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.10 0.74 8.10 -2.38 -0.02 0.72 16 34 H 0.09 0.85 6.07 -2.39 -0.01 0.84 16 35 H 0.14 1.91 7.55 -2.38 -0.02 1.89 16 36 H 0.15 1.74 6.06 -2.39 -0.01 1.72 16 37 H 0.06 2.49 7.16 -2.39 -0.02 2.47 16 38 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 39 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 40 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.06 2.81 7.93 -2.38 -0.02 2.79 16 42 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 43 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 44 H 0.07 3.82 6.07 -2.39 -0.01 3.81 16 45 H 0.08 2.73 8.14 -2.38 -0.02 2.71 16 46 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 47 H 0.42 4.40 9.06 -74.06 -0.67 3.73 16 Total: -1.00 -78.04 384.34 1.89 -76.15 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: 0.32 Total: 15.36 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: 5.75 Total: 11.23 kcal Atomic # 7 Polarization: -100.73 SS G_CDS: -4.91 Total: -105.63 kcal Atomic # 8 Polarization: -42.51 SS G_CDS: -1.31 Total: -43.82 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -78.04 1.89 -76.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345049271.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.310 kcal (2) G-P(sol) polarization free energy of solvation -78.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds