Wall clock time and date at job start Tue Mar 31 2020 20:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30860 * 125.88616 * 2 1 4 4 N 1.40065 * 108.30679 * 180.29526 * 3 2 1 5 5 C 1.46503 * 126.02219 * 179.75527 * 4 3 2 6 6 C 1.50698 * 109.46951 * 269.95796 * 5 4 3 7 7 H 1.07996 * 120.00276 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99966 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00117 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00196 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47025 * 60.00302 * 10 8 6 12 12 H 1.48505 * 109.47405 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47303 * 300.00516 * 10 8 6 14 14 C 1.35237 * 107.96147 * 359.71900 * 4 3 2 15 15 C 1.50696 * 126.16291 * 180.02562 * 14 4 3 16 16 C 1.35632 * 107.67318 * 0.02562 * 14 4 3 17 17 O 1.36187 * 126.08599 * 180.02562 * 16 14 4 18 18 C 1.34192 * 117.00021 * 89.99570 * 17 16 14 19 19 O 1.21205 * 120.00229 * 0.02562 * 18 17 16 20 20 C 1.50705 * 119.99987 * 180.02562 * 18 17 16 21 21 H 1.09004 * 110.31936 * 305.76346 * 20 18 17 22 22 O 1.44398 * 110.35952 * 183.54754 * 20 18 17 23 23 C 1.44391 * 105.26146 * 200.47877 * 22 20 18 24 24 C 1.54421 * 104.87690 * 40.67436 * 23 22 20 25 25 H 1.09002 * 112.10983 * 213.47606 * 24 23 22 26 26 C 1.54145 * 108.81862 * 88.95559 * 24 23 22 27 27 C 1.54828 * 104.35199 * 224.82869 * 26 24 23 28 28 C 1.54837 * 102.73081 * 38.24003 * 27 26 24 29 29 C 1.54140 * 104.35320 * 321.76380 * 28 27 26 30 30 H 1.08996 * 112.06131 * 260.81964 * 29 28 27 31 31 H 1.08999 * 109.46638 * 270.16451 * 1 2 3 32 32 H 1.08993 * 109.47602 * 30.16834 * 1 2 3 33 33 H 1.09002 * 109.46586 * 150.17487 * 1 2 3 34 34 H 1.09003 * 109.46940 * 29.95917 * 5 4 3 35 35 H 1.08997 * 109.47255 * 149.95788 * 5 4 3 36 36 H 0.96997 * 120.00702 * 179.97438 * 9 8 6 37 37 H 1.09004 * 109.47188 * 269.97320 * 15 14 4 38 38 H 1.08997 * 109.47534 * 29.97384 * 15 14 4 39 39 H 1.08998 * 109.47310 * 149.97896 * 15 14 4 40 40 H 1.08998 * 110.36180 * 281.82148 * 23 22 20 41 41 H 1.09002 * 110.44744 * 159.57248 * 23 22 20 42 42 H 1.09001 * 110.45228 * 106.11487 * 26 24 23 43 43 H 1.09001 * 110.46100 * 343.55175 * 26 24 23 44 44 H 1.09005 * 110.76305 * 279.92893 * 27 26 24 45 45 H 1.08997 * 110.91999 * 156.61905 * 27 26 24 46 46 H 1.09000 * 110.46044 * 80.48663 * 28 27 26 47 47 H 1.09007 * 110.45367 * 203.04777 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0602 0.0000 4 7 3.6093 0.6372 -0.0069 5 6 4.7885 1.5065 -0.0142 6 6 5.1856 1.8023 -1.4375 7 1 4.6164 1.3848 -2.2549 8 6 6.2751 2.6067 -1.6963 9 7 6.9680 3.1155 -0.7010 10 14 6.7678 2.9727 -3.4605 11 1 5.6463 3.6529 -4.1567 12 1 7.9631 3.8540 -3.4680 13 1 7.0862 1.7017 -4.1595 14 6 3.6183 -0.7152 -0.0047 15 6 4.8409 -1.5962 -0.0096 16 6 2.3288 -1.1355 0.0027 17 8 1.9073 -2.4305 0.0076 18 6 1.7249 -3.0074 1.2054 19 8 1.9340 -2.3775 2.2196 20 6 1.2601 -4.4385 1.2896 21 1 0.3419 -4.5725 0.7176 22 8 1.0540 -4.8195 2.6670 23 6 1.1028 -6.2626 2.6735 24 6 2.2541 -6.6247 1.7103 25 1 2.0627 -7.5536 1.1730 26 6 3.5718 -6.6786 2.5084 27 6 4.5879 -5.9160 1.6235 28 6 3.7375 -4.7563 1.0495 29 6 2.3604 -5.3919 0.7748 30 1 2.2348 -5.6592 -0.2744 31 1 -0.3632 0.0030 1.0277 32 1 -0.3634 0.8884 -0.5164 33 1 -0.3632 -0.8916 -0.5111 34 1 4.5554 2.4393 0.4993 35 1 5.6116 1.0067 0.4963 36 1 7.7347 3.6811 -0.8830 37 1 5.1300 -1.8108 -1.0384 38 1 5.6588 -1.0857 0.4987 39 1 4.6181 -2.5297 0.5073 40 1 0.1613 -6.6755 2.3114 41 1 1.3170 -6.6318 3.6765 42 1 3.8896 -7.7117 2.6495 43 1 3.4551 -6.1801 3.4706 44 1 4.9595 -6.5556 0.8228 45 1 5.4129 -5.5303 2.2223 46 1 3.6472 -3.9522 1.7799 47 1 4.1766 -4.3838 0.1239 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361995583.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:09 Heat of formation + Delta-G solvation = -55.470653 kcal Electronic energy + Delta-G solvation = -30123.065651 eV Core-core repulsion = 26079.632440 eV Total energy + Delta-G solvation = -4043.433211 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.52864 -40.71905 -39.27285 -36.46725 -35.88909 -34.02991 -32.61413 -31.54303 -30.84156 -29.84022 -29.08449 -26.96065 -26.39467 -25.94349 -24.11988 -22.83063 -21.84518 -20.87886 -20.23427 -19.30622 -19.14111 -17.49274 -17.34697 -16.92373 -16.65410 -15.92423 -15.48952 -15.11484 -14.99118 -14.63515 -14.57075 -14.44522 -14.06630 -13.81220 -13.25647 -12.98213 -12.82356 -12.71763 -12.53653 -12.11551 -12.00084 -11.95081 -11.74971 -11.67708 -11.58222 -11.48625 -11.35396 -11.12114 -11.07045 -11.03646 -10.96303 -10.84822 -10.78172 -10.36174 -10.26733 -9.93284 -9.81285 -9.71238 -8.68998 -8.38103 -7.72004 -6.31057 -4.39377 2.17964 2.29752 2.64672 3.20278 3.24063 3.24569 3.28809 3.41123 3.79522 3.96106 4.22382 4.25365 4.42997 4.70799 4.76169 4.88673 4.97325 5.03077 5.06083 5.13372 5.14655 5.17038 5.23823 5.30997 5.37948 5.44000 5.49427 5.55352 5.66215 5.71698 5.83832 5.87728 5.89357 5.90443 5.96953 6.07838 6.12073 6.12817 6.26451 6.39484 6.46889 6.62535 6.91871 6.97751 7.25590 7.58269 7.79678 7.81656 8.17986 8.42276 8.66233 9.27196 10.76743 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016814 B = 0.003228 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.881751 B = 8671.563342 C = 9699.471973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.060 3.940 3 N -0.279 5.279 4 N -0.313 5.313 5 C 0.257 3.743 6 C -0.540 4.540 7 H 0.065 0.935 8 C 0.067 3.933 9 N -0.890 5.890 10 Si 0.908 3.092 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.274 1.274 14 C 0.107 3.893 15 C -0.092 4.092 16 C -0.105 4.105 17 O -0.248 6.248 18 C 0.448 3.552 19 O -0.476 6.476 20 C 0.091 3.909 21 H 0.105 0.895 22 O -0.342 6.342 23 C 0.046 3.954 24 C -0.124 4.124 25 H 0.098 0.902 26 C -0.119 4.119 27 C -0.120 4.120 28 C -0.136 4.136 29 C -0.107 4.107 30 H 0.108 0.892 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.270 0.730 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.099 0.901 42 H 0.067 0.933 43 H 0.073 0.927 44 H 0.069 0.931 45 H 0.070 0.930 46 H 0.076 0.924 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.748 -22.037 3.224 23.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.106 4.106 3 N -0.104 5.104 4 N -0.093 5.093 5 C 0.140 3.860 6 C -0.579 4.579 7 H 0.083 0.917 8 C -0.137 4.137 9 N -0.528 5.528 10 Si 0.735 3.265 11 H -0.199 1.199 12 H -0.209 1.209 13 H -0.199 1.199 14 C -0.027 4.027 15 C -0.150 4.150 16 C -0.159 4.159 17 O -0.160 6.160 18 C 0.289 3.711 19 O -0.360 6.360 20 C 0.031 3.969 21 H 0.122 0.878 22 O -0.261 6.261 23 C -0.030 4.030 24 C -0.142 4.142 25 H 0.116 0.884 26 C -0.156 4.156 27 C -0.158 4.158 28 C -0.173 4.173 29 C -0.126 4.126 30 H 0.126 0.874 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.103 0.897 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.117 0.883 42 H 0.086 0.914 43 H 0.091 0.909 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.095 0.905 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.376 -20.156 3.796 22.155 hybrid contribution 0.362 -0.575 -0.971 1.185 sum -8.013 -20.731 2.825 22.405 Atomic orbital electron populations 1.20071 0.87236 1.02892 1.02399 1.22274 0.96865 0.89913 1.01542 1.77388 0.87299 1.21590 1.24080 1.49180 1.06118 1.03678 1.50289 1.19804 0.77499 0.89380 0.99276 1.21243 1.13481 1.32104 0.91046 0.91657 1.24927 0.95579 0.94868 0.98296 1.69906 1.18944 1.32594 1.31312 0.86381 0.78066 0.78510 0.83545 1.19871 1.20895 1.19890 1.20863 0.95779 0.86458 0.99553 1.20511 0.93499 0.97386 1.03600 1.17574 0.90588 0.81821 1.25874 1.84679 1.76754 1.24129 1.30426 1.23759 0.75188 0.88834 0.83312 1.90799 1.44820 1.63988 1.36378 1.22374 0.99543 0.89060 0.85888 0.87777 1.89265 1.93151 1.20605 1.23061 1.23607 0.97486 0.81046 1.00898 1.23207 0.96461 0.98345 0.96203 0.88375 1.22449 0.93777 1.00503 0.98903 1.22452 0.97660 0.96628 0.99017 1.22748 0.93981 0.98544 1.02063 1.23101 0.95046 0.93673 1.00791 0.87401 0.91141 0.90764 0.91002 0.92482 0.92719 0.92070 0.89702 0.90276 0.90792 0.91868 0.88299 0.91379 0.90868 0.91214 0.91138 0.90516 0.90219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.06 10.44 36.01 0.38 -0.68 16 2 C 0.06 1.24 7.23 -82.28 -0.59 0.64 16 3 N -0.28 -6.64 12.57 33.73 0.42 -6.22 16 4 N -0.31 -7.52 3.60 -58.17 -0.21 -7.73 16 5 C 0.26 6.64 6.00 -5.19 -0.03 6.60 16 6 C -0.54 -14.76 9.39 -34.44 -0.32 -15.09 16 7 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 8 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 9 N -0.89 -24.89 13.29 55.43 0.74 -24.15 16 10 Si 0.91 20.87 29.54 -169.99 -5.02 15.85 16 11 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 13 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 14 C 0.11 2.28 6.95 -82.03 -0.57 1.71 16 15 C -0.09 -1.60 10.09 36.00 0.36 -1.23 16 16 C -0.10 -2.12 5.34 -39.79 -0.21 -2.33 16 17 O -0.25 -4.21 10.13 -24.24 -0.25 -4.45 16 18 C 0.45 7.22 5.05 36.01 0.18 7.40 16 19 O -0.48 -9.61 15.86 -25.59 -0.41 -10.01 16 20 C 0.09 1.06 3.64 -27.13 -0.10 0.96 16 21 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 22 O -0.34 -4.37 10.91 -54.44 -0.59 -4.96 16 23 C 0.05 0.37 6.90 37.90 0.26 0.63 16 24 C -0.12 -0.89 4.02 -88.15 -0.35 -1.25 16 25 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 26 C -0.12 -0.91 6.26 -25.17 -0.16 -1.07 16 27 C -0.12 -1.04 6.90 -24.80 -0.17 -1.21 16 28 C -0.14 -1.48 4.50 -25.17 -0.11 -1.60 16 29 C -0.11 -0.99 3.89 -88.15 -0.34 -1.33 16 30 H 0.11 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.06 1.57 8.14 -51.93 -0.42 1.15 16 35 H 0.06 1.39 7.06 -51.93 -0.37 1.03 16 36 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 37 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.08 1.39 7.09 -51.93 -0.37 1.02 16 39 H 0.07 1.12 5.24 -51.93 -0.27 0.84 16 40 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.10 0.69 7.71 -51.93 -0.40 0.29 16 42 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.07 0.65 7.56 -51.93 -0.39 0.26 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.08 1.09 5.57 -51.93 -0.29 0.80 16 47 H 0.08 0.86 7.04 -51.93 -0.37 0.49 16 LS Contribution 380.36 15.07 5.73 5.73 Total: -1.00 -33.09 380.36 -8.54 -41.63 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -7.07 Total: 0.43 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: -1.88 Total: -6.12 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: 0.95 Total: -38.09 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -1.25 Total: -19.43 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.09 -8.54 -41.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361995583.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.842 kcal (2) G-P(sol) polarization free energy of solvation -33.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds