Wall clock time and date at job start Tue Mar 31 2020 20:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30860 * 125.88616 * 2 1 4 4 N 1.40065 * 108.30679 * 180.29526 * 3 2 1 5 5 C 1.46503 * 126.02219 * 179.75527 * 4 3 2 6 6 C 1.50698 * 109.46951 * 269.95796 * 5 4 3 7 7 H 1.07996 * 120.00276 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99966 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00117 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00196 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47025 * 60.00302 * 10 8 6 12 12 H 1.48505 * 109.47405 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47303 * 300.00516 * 10 8 6 14 14 C 1.35237 * 107.96147 * 359.71900 * 4 3 2 15 15 C 1.50696 * 126.16291 * 180.02562 * 14 4 3 16 16 C 1.35632 * 107.67318 * 0.02562 * 14 4 3 17 17 O 1.36187 * 126.08599 * 180.02562 * 16 14 4 18 18 C 1.34192 * 117.00021 * 89.99570 * 17 16 14 19 19 O 1.21205 * 120.00229 * 0.02562 * 18 17 16 20 20 C 1.50705 * 119.99987 * 180.02562 * 18 17 16 21 21 H 1.09004 * 110.31936 * 305.76346 * 20 18 17 22 22 O 1.44398 * 110.35952 * 183.54754 * 20 18 17 23 23 C 1.44391 * 105.26146 * 200.47877 * 22 20 18 24 24 C 1.54421 * 104.87690 * 40.67436 * 23 22 20 25 25 H 1.09002 * 112.10983 * 213.47606 * 24 23 22 26 26 C 1.54145 * 108.81862 * 88.95559 * 24 23 22 27 27 C 1.54828 * 104.35199 * 224.82869 * 26 24 23 28 28 C 1.54837 * 102.73081 * 38.24003 * 27 26 24 29 29 C 1.54140 * 104.35320 * 321.76380 * 28 27 26 30 30 H 1.08996 * 112.06131 * 260.81964 * 29 28 27 31 31 H 1.08999 * 109.46638 * 270.16451 * 1 2 3 32 32 H 1.08993 * 109.47602 * 30.16834 * 1 2 3 33 33 H 1.09002 * 109.46586 * 150.17487 * 1 2 3 34 34 H 1.09003 * 109.46940 * 29.95917 * 5 4 3 35 35 H 1.08997 * 109.47255 * 149.95788 * 5 4 3 36 36 H 0.96997 * 120.00702 * 179.97438 * 9 8 6 37 37 H 1.09004 * 109.47188 * 269.97320 * 15 14 4 38 38 H 1.08997 * 109.47534 * 29.97384 * 15 14 4 39 39 H 1.08998 * 109.47310 * 149.97896 * 15 14 4 40 40 H 1.08998 * 110.36180 * 281.82148 * 23 22 20 41 41 H 1.09002 * 110.44744 * 159.57248 * 23 22 20 42 42 H 1.09001 * 110.45228 * 106.11487 * 26 24 23 43 43 H 1.09001 * 110.46100 * 343.55175 * 26 24 23 44 44 H 1.09005 * 110.76305 * 279.92893 * 27 26 24 45 45 H 1.08997 * 110.91999 * 156.61905 * 27 26 24 46 46 H 1.09000 * 110.46044 * 80.48663 * 28 27 26 47 47 H 1.09007 * 110.45367 * 203.04777 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0602 0.0000 4 7 3.6093 0.6372 -0.0069 5 6 4.7885 1.5065 -0.0142 6 6 5.1856 1.8023 -1.4375 7 1 4.6164 1.3848 -2.2549 8 6 6.2751 2.6067 -1.6963 9 7 6.9680 3.1155 -0.7010 10 14 6.7678 2.9727 -3.4605 11 1 5.6463 3.6529 -4.1567 12 1 7.9631 3.8540 -3.4680 13 1 7.0862 1.7017 -4.1595 14 6 3.6183 -0.7152 -0.0047 15 6 4.8409 -1.5962 -0.0096 16 6 2.3288 -1.1355 0.0027 17 8 1.9073 -2.4305 0.0076 18 6 1.7249 -3.0074 1.2054 19 8 1.9340 -2.3775 2.2196 20 6 1.2601 -4.4385 1.2896 21 1 0.3419 -4.5725 0.7176 22 8 1.0540 -4.8195 2.6670 23 6 1.1028 -6.2626 2.6735 24 6 2.2541 -6.6247 1.7103 25 1 2.0627 -7.5536 1.1730 26 6 3.5718 -6.6786 2.5084 27 6 4.5879 -5.9160 1.6235 28 6 3.7375 -4.7563 1.0495 29 6 2.3604 -5.3919 0.7748 30 1 2.2348 -5.6592 -0.2744 31 1 -0.3632 0.0030 1.0277 32 1 -0.3634 0.8884 -0.5164 33 1 -0.3632 -0.8916 -0.5111 34 1 4.5554 2.4393 0.4993 35 1 5.6116 1.0067 0.4963 36 1 7.7347 3.6811 -0.8830 37 1 5.1300 -1.8108 -1.0384 38 1 5.6588 -1.0857 0.4987 39 1 4.6181 -2.5297 0.5073 40 1 0.1613 -6.6755 2.3114 41 1 1.3170 -6.6318 3.6765 42 1 3.8896 -7.7117 2.6495 43 1 3.4551 -6.1801 3.4706 44 1 4.9595 -6.5556 0.8228 45 1 5.4129 -5.5303 2.2223 46 1 3.6472 -3.9522 1.7799 47 1 4.1766 -4.3838 0.1239 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361995583.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:08 Heat of formation + Delta-G solvation = -74.625764 kcal Electronic energy + Delta-G solvation = -30123.896279 eV Core-core repulsion = 26079.632440 eV Total energy + Delta-G solvation = -4044.263839 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -42.89836 -41.89499 -40.52814 -37.82869 -36.73100 -35.92513 -34.42405 -32.70154 -32.14511 -30.74952 -30.55023 -28.23974 -27.83508 -27.39633 -25.23742 -24.45786 -22.91660 -21.92754 -21.01274 -20.88318 -20.53667 -18.93881 -18.79028 -18.26646 -17.90591 -17.33023 -16.78413 -16.36537 -16.18270 -15.96922 -15.69929 -15.38867 -15.30374 -14.94133 -14.70095 -14.54321 -14.22088 -14.15966 -13.91266 -13.62037 -13.46998 -13.35744 -13.15698 -12.92619 -12.71096 -12.65535 -12.50306 -12.42188 -12.28734 -12.19972 -12.06455 -11.84374 -11.79658 -11.76270 -11.51637 -11.44908 -11.31942 -10.77577 -10.67968 -10.12466 -9.39786 -8.38493 -6.56683 0.69502 1.03253 1.08211 1.37047 1.39427 1.47607 1.60676 1.98007 2.31805 2.92426 2.99942 3.21843 3.39748 3.56308 3.62164 3.70064 3.88390 4.02082 4.09211 4.11975 4.28878 4.31682 4.38637 4.45264 4.52444 4.54929 4.57187 4.65587 4.66587 4.69647 4.72283 4.75713 4.79117 4.86202 4.88917 4.94882 5.01109 5.16058 5.16384 5.21457 5.23171 5.28635 5.45676 5.47144 5.69624 5.71619 5.76254 6.01104 6.51975 6.72585 6.81876 7.14597 8.69006 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016814 B = 0.003228 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.881751 B = 8671.563342 C = 9699.471973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.058 3.942 3 N -0.324 5.324 4 N -0.339 5.339 5 C 0.274 3.726 6 C -0.557 4.557 7 H 0.055 0.945 8 C 0.023 3.977 9 N -0.919 5.919 10 Si 0.976 3.024 11 H -0.274 1.274 12 H -0.273 1.273 13 H -0.262 1.262 14 C 0.093 3.907 15 C -0.088 4.088 16 C -0.105 4.105 17 O -0.238 6.238 18 C 0.451 3.549 19 O -0.524 6.524 20 C 0.093 3.907 21 H 0.139 0.861 22 O -0.379 6.379 23 C 0.039 3.961 24 C -0.112 4.112 25 H 0.134 0.866 26 C -0.119 4.119 27 C -0.118 4.118 28 C -0.144 4.144 29 C -0.104 4.104 30 H 0.137 0.863 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.026 0.974 35 H 0.049 0.951 36 H 0.275 0.725 37 H 0.099 0.901 38 H 0.070 0.930 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.104 0.896 42 H 0.091 0.909 43 H 0.051 0.949 44 H 0.090 0.910 45 H 0.058 0.942 46 H 0.036 0.964 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.749 -25.430 1.453 27.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.108 4.108 3 N -0.148 5.148 4 N -0.120 5.120 5 C 0.156 3.844 6 C -0.595 4.595 7 H 0.073 0.927 8 C -0.179 4.179 9 N -0.557 5.557 10 Si 0.799 3.201 11 H -0.199 1.199 12 H -0.198 1.198 13 H -0.186 1.186 14 C -0.039 4.039 15 C -0.145 4.145 16 C -0.159 4.159 17 O -0.150 6.150 18 C 0.296 3.704 19 O -0.411 6.411 20 C 0.034 3.966 21 H 0.156 0.844 22 O -0.299 6.299 23 C -0.036 4.036 24 C -0.130 4.130 25 H 0.152 0.848 26 C -0.157 4.157 27 C -0.156 4.156 28 C -0.181 4.181 29 C -0.122 4.122 30 H 0.155 0.845 31 H 0.098 0.902 32 H 0.104 0.896 33 H 0.117 0.883 34 H 0.044 0.956 35 H 0.067 0.933 36 H 0.084 0.916 37 H 0.117 0.883 38 H 0.089 0.911 39 H 0.112 0.888 40 H 0.108 0.892 41 H 0.122 0.878 42 H 0.110 0.890 43 H 0.070 0.930 44 H 0.108 0.892 45 H 0.077 0.923 46 H 0.055 0.945 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.389 -23.587 2.029 25.468 hybrid contribution 0.609 0.400 -0.314 0.794 sum -8.780 -23.187 1.715 24.853 Atomic orbital electron populations 1.20270 0.83785 1.04816 1.03517 1.23117 0.99000 0.89372 0.99315 1.77306 0.87529 1.23543 1.26391 1.48950 1.05845 1.04505 1.52674 1.19342 0.78204 0.88469 0.98421 1.21369 1.13968 1.32849 0.91275 0.92703 1.25797 0.95193 0.94211 1.02655 1.70003 1.19314 1.32871 1.33464 0.85340 0.77798 0.78805 0.78179 1.19911 1.19778 1.18623 1.21496 0.97679 0.85783 0.98957 1.20605 0.91887 0.97421 1.04632 1.17634 0.90204 0.83213 1.24842 1.84678 1.76526 1.22427 1.31361 1.24742 0.73465 0.90312 0.81924 1.90783 1.47131 1.65445 1.37750 1.22659 1.01646 0.85851 0.86423 0.84393 1.89242 1.93388 1.23552 1.23723 1.23903 0.99195 0.78663 1.01870 1.23257 0.95508 0.98728 0.95486 0.84768 1.22466 0.94044 1.01376 0.97791 1.22471 0.97348 0.96156 0.99612 1.22735 0.96106 0.98424 1.00835 1.23245 0.92592 0.93619 1.02793 0.84525 0.90244 0.89620 0.88302 0.95561 0.93308 0.91598 0.88266 0.91105 0.88779 0.89200 0.87756 0.89010 0.92979 0.89166 0.92295 0.94530 0.90510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.98 10.44 71.24 0.74 -1.24 16 2 C 0.06 2.43 7.23 43.17 0.31 2.75 16 3 N -0.32 -16.03 12.57 -47.19 -0.59 -16.63 16 4 N -0.34 -17.15 3.60 -337.94 -1.22 -18.37 16 5 C 0.27 14.98 6.00 85.63 0.51 15.49 16 6 C -0.56 -31.45 9.39 25.60 0.24 -31.21 16 7 H 0.05 3.15 7.81 -2.91 -0.02 3.13 16 8 C 0.02 1.25 5.46 84.65 0.46 1.71 16 9 N -0.92 -52.47 13.29 21.45 0.28 -52.18 16 10 Si 0.98 42.85 29.54 68.60 2.03 44.87 16 11 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 12 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 13 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 14 C 0.09 4.10 6.95 41.43 0.29 4.38 16 15 C -0.09 -3.13 10.09 71.23 0.72 -2.41 16 16 C -0.11 -4.30 5.34 22.14 0.12 -4.18 16 17 O -0.24 -7.89 10.13 2.23 0.02 -7.86 16 18 C 0.45 14.34 5.05 71.24 0.36 14.70 16 19 O -0.52 -21.78 15.86 27.04 0.43 -21.35 16 20 C 0.09 1.97 3.64 30.33 0.11 2.08 16 21 H 0.14 1.99 8.14 -2.38 -0.02 1.97 16 22 O -0.38 -9.12 10.91 -130.61 -1.42 -10.55 16 23 C 0.04 0.51 6.90 72.46 0.50 1.01 16 24 C -0.11 -1.17 4.02 -9.19 -0.04 -1.20 16 25 H 0.13 0.54 8.14 -2.39 -0.02 0.52 16 26 C -0.12 -1.53 6.26 31.61 0.20 -1.33 16 27 C -0.12 -1.85 6.90 31.85 0.22 -1.63 16 28 C -0.14 -2.97 4.50 31.61 0.14 -2.83 16 29 C -0.10 -1.59 3.89 -9.20 -0.04 -1.62 16 30 H 0.14 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.05 2.66 7.06 -2.39 -0.02 2.65 16 36 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 37 H 0.10 3.21 8.14 -2.38 -0.02 3.19 16 38 H 0.07 2.62 7.09 -2.39 -0.02 2.60 16 39 H 0.09 2.91 5.24 -2.39 -0.01 2.90 16 40 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.10 1.20 7.71 -2.39 -0.02 1.19 16 42 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.05 0.89 7.56 -2.39 -0.02 0.87 16 44 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 45 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.04 1.06 5.57 -2.39 -0.01 1.04 16 47 H 0.08 1.57 7.04 -2.38 -0.02 1.55 16 Total: -1.00 -76.36 380.36 5.36 -70.99 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: 0.98 Total: 16.61 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: 4.85 Total: -5.54 kcal Atomic # 7 Polarization: -85.65 SS G_CDS: -1.53 Total: -87.18 kcal Atomic # 8 Polarization: -38.79 SS G_CDS: -0.97 Total: -39.76 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.87 kcal Total: -76.36 5.36 -70.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361995583.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.631 kcal (2) G-P(sol) polarization free energy of solvation -76.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds