Wall clock time and date at job start Tue Mar 31 2020 18:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.34513 * 125.79072 * 2 1 4 4 C 1.41383 * 106.84409 * 179.79021 * 3 2 1 5 5 C 1.34513 * 106.83846 * 0.37251 * 4 3 2 6 6 C 1.50696 * 125.79158 * 179.88787 * 5 4 3 7 7 N 1.46499 * 109.47218 * 89.71711 * 6 5 4 8 8 C 1.34776 * 120.00376 * 90.00079 * 7 6 5 9 9 O 1.21274 * 120.00719 * 185.96023 * 8 7 6 10 10 C 1.50700 * 119.99448 * 5.68403 * 8 7 6 11 11 N 1.46904 * 109.47021 * 175.37415 * 10 8 7 12 12 C 1.47474 * 111.00534 * 74.02703 * 11 10 8 13 13 C 1.53510 * 87.93430 * 138.70285 * 12 11 10 14 14 O 1.42892 * 114.34288 * 87.63910 * 13 12 11 15 15 C 1.50704 * 114.16770 * 220.32995 * 13 12 11 16 16 H 1.07997 * 120.00000 * 93.84793 * 15 13 12 17 17 C 1.37880 * 120.00185 * 273.83763 * 15 13 12 18 18 N 1.31514 * 119.99634 * 0.02562 * 17 15 13 19 19 Si 1.86793 * 120.00054 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47146 * 60.00545 * 19 17 15 21 21 H 1.48505 * 109.47095 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47337 * 300.00226 * 19 17 15 23 23 C 1.47485 * 110.99934 * 170.00251 * 11 10 8 24 24 C 1.46505 * 120.00040 * 270.00547 * 7 6 5 25 25 C 1.53005 * 117.49744 * 196.45152 * 24 7 6 26 26 C 1.52995 * 59.99896 * 252.50882 * 25 24 7 27 27 O 1.34302 * 125.79106 * 180.02562 * 2 1 3 28 28 H 1.08998 * 109.47293 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47463 * 300.00342 * 1 2 3 30 30 H 1.09003 * 109.47245 * 59.99875 * 1 2 3 31 31 H 1.08004 * 126.58086 * 0.04420 * 3 2 1 32 32 H 1.07998 * 126.58112 * 180.23917 * 4 3 2 33 33 H 1.09001 * 109.47405 * 329.72201 * 6 5 4 34 34 H 1.08995 * 109.47447 * 209.71850 * 6 5 4 35 35 H 1.09001 * 109.47234 * 295.37174 * 10 8 7 36 36 H 1.09000 * 109.47639 * 55.37196 * 10 8 7 37 37 H 1.08994 * 113.47783 * 253.47453 * 12 11 10 38 38 H 1.09006 * 113.47230 * 23.93624 * 12 11 10 39 39 H 0.96702 * 114.00515 * 86.06973 * 14 13 12 40 40 H 0.97001 * 119.99707 * 179.97438 * 18 17 15 41 41 H 1.08994 * 113.47187 * 336.05583 * 23 11 10 42 42 H 1.08990 * 113.47928 * 106.46605 * 23 11 10 43 43 H 1.09000 * 115.54715 * 342.15311 * 24 7 6 44 44 H 1.08997 * 117.50103 * 359.97438 * 25 24 7 45 45 H 1.08995 * 117.49830 * 145.01934 * 25 24 7 46 46 H 1.09006 * 117.49868 * 252.51455 * 26 25 24 47 47 H 1.08996 * 117.52252 * 107.48083 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6308 0.6321 0.0050 5 6 3.5814 -0.7121 -0.0007 6 6 4.7705 -1.6378 -0.0007 7 7 5.1557 -1.9381 1.3804 8 6 4.6160 -2.9972 2.0156 9 8 4.8507 -3.1839 3.1907 10 6 3.7158 -3.9461 1.2670 11 7 3.3496 -5.0672 2.1428 12 6 2.3654 -4.6461 3.1571 13 6 1.6360 -5.9761 2.9211 14 8 2.1114 -7.0589 3.7231 15 6 0.1334 -5.8616 2.9060 16 1 -0.3888 -5.7304 1.9699 17 6 -0.5747 -5.9246 4.0874 18 7 0.0613 -6.0841 5.2275 19 14 -2.4372 -5.7834 4.0687 20 1 -3.0086 -6.8819 3.2491 21 1 -2.9549 -5.8803 5.4572 22 1 -2.8286 -4.4752 3.4852 23 6 2.2870 -5.8886 1.5335 24 6 6.1276 -1.0869 2.0714 25 6 6.7789 -1.6437 3.3390 26 6 5.7327 -0.5321 3.4414 27 8 2.2924 -1.0894 -0.0005 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 1.9665 2.1204 0.0007 32 1 4.5211 1.2433 0.0099 33 1 5.6040 -1.1586 -0.5143 34 1 4.5106 -2.5632 -0.5148 35 1 2.8139 -3.4203 0.9536 36 1 4.2382 -4.3263 0.3892 37 1 2.7861 -4.5533 4.1582 38 1 1.7833 -3.7732 2.8611 39 1 1.6998 -7.1117 4.5966 40 1 -0.4368 -6.1281 6.0587 41 1 1.6841 -5.3473 0.8044 42 1 2.6415 -6.8483 1.1579 43 1 6.7380 -0.4528 1.4284 44 1 6.4840 -2.6430 3.6591 45 1 7.8181 -1.3760 3.5301 46 1 6.0836 0.4671 3.6999 47 1 4.7496 -0.7998 3.8285 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434466431.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:37 Heat of formation + Delta-G solvation = -1.882944 kcal Electronic energy + Delta-G solvation = -30154.979464 eV Core-core repulsion = 26113.869991 eV Total energy + Delta-G solvation = -4041.109474 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.55153 -41.75102 -40.54426 -37.52972 -36.32425 -35.80688 -34.12888 -34.11250 -32.77524 -31.18180 -29.22788 -28.12847 -26.74078 -25.48045 -25.17257 -23.32959 -23.13763 -22.64254 -21.26612 -20.57459 -20.20643 -19.26802 -18.44098 -17.76553 -17.40796 -17.13635 -16.86849 -16.65166 -16.46459 -15.93586 -15.70162 -15.56927 -15.22069 -14.92510 -14.37509 -14.13205 -14.10430 -13.89401 -13.85042 -13.75122 -13.69682 -13.62662 -13.39748 -13.18066 -12.90386 -12.75521 -12.63991 -12.62034 -12.31410 -12.24693 -12.09465 -11.99389 -11.31974 -11.19993 -10.81027 -10.67168 -10.47658 -10.14517 -9.76568 -9.59532 -9.23816 -8.27146 -6.46124 0.63036 1.40690 1.42040 1.42785 1.51438 1.57961 1.95246 2.03990 2.35333 2.92424 2.94708 3.16812 3.40777 3.68999 3.83219 3.95067 3.96032 4.01491 4.05271 4.08346 4.14202 4.19298 4.21041 4.32274 4.39195 4.47646 4.50911 4.52644 4.63936 4.66080 4.79696 4.84460 4.86030 4.89019 5.03621 5.06326 5.12206 5.27163 5.31506 5.32444 5.34915 5.63273 5.70762 5.71864 5.91293 6.07112 6.24037 6.28824 6.60205 7.13005 7.27104 7.51364 8.78531 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.010354 B = 0.004277 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2703.748348 B = 6545.152879 C = 8171.087552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.027 4.027 3 C -0.226 4.226 4 C -0.182 4.182 5 C -0.062 4.062 6 C 0.190 3.810 7 N -0.583 5.583 8 C 0.514 3.486 9 O -0.545 6.545 10 C -0.001 4.001 11 N -0.462 5.462 12 C 0.011 3.989 13 C 0.219 3.781 14 O -0.583 6.583 15 C -0.557 4.557 16 H 0.072 0.928 17 C 0.022 3.978 18 N -0.924 5.924 19 Si 0.972 3.028 20 H -0.266 1.266 21 H -0.282 1.282 22 H -0.268 1.268 23 C 0.018 3.982 24 C 0.086 3.914 25 C -0.200 4.200 26 C -0.194 4.194 27 O -0.197 6.197 28 H 0.066 0.934 29 H 0.091 0.909 30 H 0.109 0.891 31 H 0.166 0.834 32 H 0.174 0.826 33 H 0.160 0.840 34 H 0.106 0.894 35 H 0.071 0.929 36 H 0.129 0.871 37 H 0.032 0.968 38 H 0.044 0.956 39 H 0.383 0.617 40 H 0.274 0.726 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.178 0.822 44 H 0.095 0.905 45 H 0.117 0.883 46 H 0.122 0.878 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.117 17.274 -14.905 24.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.077 4.077 3 C -0.245 4.245 4 C -0.202 4.202 5 C -0.112 4.112 6 C 0.068 3.932 7 N -0.315 5.315 8 C 0.304 3.696 9 O -0.421 6.421 10 C -0.132 4.132 11 N -0.184 5.184 12 C -0.119 4.119 13 C 0.178 3.822 14 O -0.394 6.394 15 C -0.594 4.594 16 H 0.090 0.910 17 C -0.177 4.177 18 N -0.565 5.565 19 Si 0.796 3.204 20 H -0.190 1.190 21 H -0.207 1.207 22 H -0.193 1.193 23 C -0.111 4.111 24 C -0.018 4.018 25 C -0.238 4.238 26 C -0.232 4.232 27 O -0.095 6.095 28 H 0.086 0.914 29 H 0.110 0.890 30 H 0.128 0.872 31 H 0.184 0.816 32 H 0.191 0.809 33 H 0.177 0.823 34 H 0.124 0.876 35 H 0.088 0.912 36 H 0.147 0.853 37 H 0.051 0.949 38 H 0.062 0.938 39 H 0.238 0.762 40 H 0.084 0.916 41 H 0.102 0.898 42 H 0.099 0.901 43 H 0.195 0.805 44 H 0.113 0.887 45 H 0.135 0.865 46 H 0.140 0.860 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 9.159 16.440 -14.442 23.722 hybrid contribution -2.096 0.704 0.957 2.409 sum 7.063 17.143 -13.485 22.927 Atomic orbital electron populations 1.20466 0.83933 1.04186 1.04925 1.23114 0.95260 0.84333 1.05023 1.21884 0.92950 1.00020 1.09632 1.21901 0.98918 0.93517 1.05861 1.23279 0.83289 0.95966 1.08697 1.20342 0.92058 0.99083 0.81685 1.47525 1.42396 1.26774 1.14802 1.20860 0.80149 0.81565 0.87076 1.90593 1.59559 1.74660 1.17331 1.22772 0.99338 0.93281 0.97809 1.68826 1.28003 1.13316 1.08302 1.24203 0.92318 1.00029 0.95365 1.19759 0.90857 0.83338 0.88234 1.85999 1.68996 1.51353 1.33082 1.21817 0.92058 1.51319 0.94254 0.91007 1.25931 1.04208 0.92939 0.94625 1.69406 1.38068 1.50218 0.98793 0.85394 0.78450 0.79127 0.77413 1.19046 1.20694 1.19253 1.24023 0.91641 0.98310 0.97111 1.22099 0.94056 0.97084 0.88515 1.23676 0.98329 1.00500 1.01264 1.23133 0.99035 0.99226 1.01825 1.83998 1.17417 1.36332 1.71756 0.91446 0.89017 0.87225 0.81647 0.80895 0.82296 0.87555 0.91154 0.85301 0.94924 0.93811 0.76243 0.91616 0.89756 0.90056 0.80462 0.88739 0.86496 0.86037 0.93186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.46 10.42 71.23 0.74 -0.72 16 2 C -0.03 -0.65 7.32 24.83 0.18 -0.46 16 3 C -0.23 -4.61 10.81 22.19 0.24 -4.37 16 4 C -0.18 -3.44 10.81 22.19 0.24 -3.20 16 5 C -0.06 -1.35 6.90 24.83 0.17 -1.18 16 6 C 0.19 3.16 5.87 85.63 0.50 3.67 16 7 N -0.58 -14.34 2.82 -802.15 -2.26 -16.60 16 8 C 0.51 18.17 7.34 87.66 0.64 18.82 16 9 O -0.54 -24.28 11.33 -3.01 -0.03 -24.31 16 10 C 0.00 -0.02 3.85 85.56 0.33 0.31 16 11 N -0.46 -20.91 6.10 -932.82 -5.69 -26.60 16 12 C 0.01 0.56 6.04 83.58 0.50 1.07 16 13 C 0.22 11.91 1.57 -11.19 -0.02 11.89 16 14 O -0.58 -34.37 13.54 -148.98 -2.02 -36.39 16 15 C -0.56 -30.72 8.68 25.60 0.22 -30.50 16 16 H 0.07 3.76 7.81 -2.91 -0.02 3.74 16 17 C 0.02 1.22 5.39 84.66 0.46 1.67 16 18 N -0.92 -52.82 11.02 21.45 0.24 -52.59 16 19 Si 0.97 42.47 29.54 68.60 2.03 44.49 16 20 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 21 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 22 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 23 C 0.02 0.79 7.12 83.58 0.60 1.38 16 24 C 0.09 1.80 6.62 44.99 0.30 2.09 16 25 C -0.20 -5.26 9.63 30.59 0.29 -4.97 16 26 C -0.19 -5.02 9.87 30.59 0.30 -4.72 16 27 O -0.20 -5.46 10.03 -2.51 -0.03 -5.49 16 28 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.09 1.54 8.14 -2.39 -0.02 1.53 16 30 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.17 2.54 8.06 -2.91 -0.02 2.52 16 32 H 0.17 2.15 8.06 -2.91 -0.02 2.13 16 33 H 0.16 1.15 8.03 -2.39 -0.02 1.13 16 34 H 0.11 1.62 6.32 -2.39 -0.02 1.60 16 35 H 0.07 2.46 6.93 -2.39 -0.02 2.45 16 36 H 0.13 3.49 7.36 -2.39 -0.02 3.47 16 37 H 0.03 1.94 8.07 -2.39 -0.02 1.92 16 38 H 0.04 2.32 7.66 -2.38 -0.02 2.30 16 39 H 0.38 23.21 6.33 -74.06 -0.47 22.74 16 40 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 41 H 0.08 3.38 7.72 -2.39 -0.02 3.36 16 42 H 0.08 3.49 8.14 -2.39 -0.02 3.48 16 43 H 0.18 1.92 8.09 -2.39 -0.02 1.90 16 44 H 0.09 3.45 5.22 -5.12 -0.03 3.43 16 45 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 46 H 0.12 2.36 8.14 -2.38 -0.02 2.34 16 47 H 0.05 1.77 7.59 -2.39 -0.02 1.75 16 Total: -1.00 -76.72 384.38 -1.55 -78.27 By element: Atomic # 1 Polarization: 47.92 SS G_CDS: 0.51 Total: 48.43 kcal Atomic # 6 Polarization: -14.92 SS G_CDS: 5.71 Total: -9.21 kcal Atomic # 7 Polarization: -88.07 SS G_CDS: -7.72 Total: -95.79 kcal Atomic # 8 Polarization: -64.11 SS G_CDS: -2.08 Total: -66.19 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.49 kcal Total: -76.72 -1.55 -78.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434466431.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.392 kcal (2) G-P(sol) polarization free energy of solvation -76.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds