Wall clock time and date at job start Tue Mar 31 2020 20:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42906 * 113.99740 * 2 1 4 4 C 1.53005 * 109.47054 * 179.97438 * 3 2 1 5 5 C 1.53000 * 110.63762 * 298.30977 * 4 3 2 6 6 C 1.55154 * 110.86921 * 175.06075 * 4 3 2 7 7 C 1.55127 * 101.48255 * 205.89695 * 6 4 3 8 8 N 1.47421 * 104.72509 * 37.29996 * 7 6 4 9 9 C 1.34778 * 125.65162 * 155.82024 * 8 7 6 10 10 O 1.21596 * 119.99889 * 179.69170 * 9 8 7 11 11 N 1.34774 * 120.00048 * 359.68743 * 9 8 7 12 12 C 1.40023 * 120.00057 * 175.50242 * 11 9 8 13 13 C 1.38906 * 120.00154 * 35.12863 * 12 11 9 14 14 C 1.38013 * 119.99782 * 179.97438 * 13 12 11 15 15 C 1.38902 * 120.00209 * 359.97437 * 14 13 12 16 16 O 1.35783 * 120.00240 * 180.02562 * 15 14 13 17 17 C 1.34818 * 116.99795 * 354.65712 * 16 15 14 18 18 H 1.08003 * 119.99642 * 5.03141 * 17 16 15 19 19 C 1.38625 * 120.00119 * 185.03844 * 17 16 15 20 20 N 1.31572 * 120.00179 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 119.99829 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47160 * 90.00398 * 21 19 17 23 23 H 1.48501 * 109.47124 * 210.00351 * 21 19 17 24 24 H 1.48506 * 109.47386 * 330.00201 * 21 19 17 25 25 C 1.38904 * 120.00172 * 0.29531 * 15 14 13 26 26 C 1.38010 * 119.99733 * 359.45449 * 25 15 14 27 27 C 1.47024 * 108.69890 * 335.54843 * 8 7 6 28 28 H 1.08993 * 109.47540 * 300.00210 * 1 2 3 29 29 H 1.09001 * 109.47010 * 60.00706 * 1 2 3 30 30 H 1.09000 * 109.47073 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47336 * 59.99221 * 3 2 1 32 32 H 1.09007 * 109.46811 * 299.99662 * 3 2 1 33 33 H 1.09007 * 109.46716 * 181.69055 * 5 4 3 34 34 H 1.09003 * 109.47000 * 301.68352 * 5 4 3 35 35 H 1.09000 * 109.47431 * 61.69005 * 5 4 3 36 36 H 1.08996 * 111.00630 * 324.13473 * 6 4 3 37 37 H 1.08993 * 111.00483 * 87.98930 * 6 4 3 38 38 H 1.09000 * 110.49789 * 278.45003 * 7 6 4 39 39 H 1.09009 * 110.34374 * 156.06202 * 7 6 4 40 40 H 0.97002 * 119.99756 * 355.49658 * 11 9 8 41 41 H 1.08002 * 120.00538 * 359.95138 * 13 12 11 42 42 H 1.08001 * 119.99654 * 179.97438 * 14 13 12 43 43 H 0.97003 * 120.00088 * 179.97438 * 20 19 17 44 44 H 1.08003 * 120.00384 * 179.72432 * 25 15 14 45 45 H 1.08005 * 119.99816 * 180.29075 * 26 25 15 46 46 H 1.09004 * 109.88309 * 120.70726 * 27 8 7 47 47 H 1.08997 * 109.88207 * 241.71487 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 6 4.0189 0.4655 1.2615 6 6 4.2005 2.5810 -0.1242 7 6 5.5642 2.2171 -0.7679 8 7 5.2541 1.1281 -1.7121 9 6 5.9797 0.8011 -2.7997 10 8 5.6309 -0.1240 -3.5076 11 7 7.0918 1.4994 -3.1028 12 6 7.8970 1.1020 -4.1772 13 6 7.3168 0.5577 -5.3159 14 6 8.1105 0.1664 -6.3751 15 6 9.4894 0.3175 -6.3026 16 8 10.2702 -0.0669 -7.3449 17 6 9.6571 -0.6882 -8.3724 18 1 8.5817 -0.7872 -8.3793 19 6 10.4071 -1.2000 -9.4199 20 7 9.8087 -1.8059 -10.4229 21 14 12.2671 -1.0282 -9.4081 22 1 12.8686 -2.2046 -8.7303 23 1 12.7661 -0.9529 -10.8047 24 1 12.6454 0.2096 -8.6799 25 6 10.0701 0.8566 -5.1618 26 6 9.2761 1.2526 -4.1047 27 6 4.0258 0.4538 -1.2669 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.6885 1.8465 0.8899 32 1 1.6885 1.8464 -0.8901 33 1 5.1079 0.4166 1.2569 34 1 3.6836 1.0123 2.1429 35 1 3.6099 -0.5446 1.2831 36 1 3.6192 3.2339 -0.7752 37 1 4.3422 3.0353 0.8564 38 1 6.2652 1.8722 -0.0078 39 1 5.9731 3.0759 -1.3004 40 1 7.3344 2.2774 -2.5767 41 1 6.2447 0.4402 -5.3723 42 1 7.6594 -0.2572 -7.2602 43 1 10.3335 -2.1636 -11.1561 44 1 11.1426 0.9699 -5.1036 45 1 9.7272 1.6762 -3.2195 46 1 3.2665 0.5139 -2.0466 47 1 4.2387 -0.5901 -1.0367 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001475877777.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:05 Heat of formation + Delta-G solvation = -60.749327 kcal Electronic energy + Delta-G solvation = -28249.293127 eV Core-core repulsion = 24205.631016 eV Total energy + Delta-G solvation = -4043.662112 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.77175 -39.48484 -38.65746 -37.53565 -36.45578 -34.11145 -33.21442 -32.23481 -30.23721 -29.95144 -28.35221 -27.83441 -26.74837 -25.74689 -24.90636 -23.36268 -22.35298 -21.29489 -19.78238 -19.68064 -18.51122 -17.67356 -17.22370 -16.84460 -16.65419 -16.29552 -16.11196 -15.54363 -14.94222 -14.91731 -14.34252 -14.02506 -13.92774 -13.78965 -13.73776 -13.64882 -13.22622 -12.92938 -12.73630 -12.56338 -12.49619 -12.34949 -12.26997 -12.18705 -11.85589 -11.65438 -11.57326 -11.24792 -11.18694 -10.97342 -10.92222 -10.69672 -10.23375 -10.08053 -9.88277 -9.58598 -9.21988 -8.79852 -8.66473 -8.21696 -6.97970 -6.35147 -4.00863 2.10965 2.20140 2.56912 3.24004 3.26084 3.29392 3.34341 3.44187 3.89794 4.03659 4.17428 4.28708 4.41087 4.55899 4.65048 4.76919 4.82102 4.91283 4.91488 4.95730 5.05397 5.11727 5.16228 5.16477 5.28280 5.30738 5.47061 5.52984 5.56139 5.61078 5.68700 5.70996 5.78511 5.95394 5.99782 6.15485 6.17334 6.35819 6.65722 6.72581 6.74649 6.92426 7.14620 7.23226 7.38235 7.65688 7.86608 8.00477 8.09444 8.69077 9.00011 9.62290 10.72612 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.025452 B = 0.002065 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.863944 B =13557.225606 C =14359.153249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.386 6.386 3 C 0.077 3.923 4 C -0.072 4.072 5 C -0.134 4.134 6 C -0.121 4.121 7 C 0.100 3.900 8 N -0.639 5.639 9 C 0.717 3.283 10 O -0.569 6.569 11 N -0.674 5.674 12 C 0.064 3.936 13 C -0.067 4.067 14 C -0.205 4.205 15 C 0.150 3.850 16 O -0.218 6.218 17 C -0.387 4.387 18 H 0.107 0.893 19 C 0.062 3.938 20 N -0.880 5.880 21 Si 0.906 3.094 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.260 1.260 25 C -0.177 4.177 26 C -0.098 4.098 27 C 0.144 3.856 28 H 0.040 0.960 29 H 0.041 0.959 30 H 0.087 0.913 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.397 0.603 41 H 0.129 0.871 42 H 0.136 0.864 43 H 0.279 0.721 44 H 0.121 0.879 45 H 0.115 0.885 46 H 0.068 0.932 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.333 11.103 25.834 31.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C 0.000 4.000 4 C -0.073 4.073 5 C -0.191 4.191 6 C -0.159 4.159 7 C -0.023 4.023 8 N -0.379 5.379 9 C 0.420 3.580 10 O -0.445 6.445 11 N -0.322 5.322 12 C -0.029 4.029 13 C -0.087 4.087 14 C -0.225 4.225 15 C 0.097 3.903 16 O -0.123 6.123 17 C -0.463 4.463 18 H 0.124 0.876 19 C -0.141 4.141 20 N -0.519 5.519 21 Si 0.732 3.268 22 H -0.199 1.199 23 H -0.209 1.209 24 H -0.184 1.184 25 C -0.197 4.197 26 C -0.119 4.119 27 C 0.021 3.979 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.105 0.895 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.106 0.894 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.231 0.769 41 H 0.147 0.853 42 H 0.154 0.846 43 H 0.089 0.911 44 H 0.139 0.861 45 H 0.133 0.867 46 H 0.086 0.914 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.181 10.110 24.984 30.455 hybrid contribution 0.497 0.598 0.152 0.792 sum -13.683 10.707 25.136 30.556 Atomic orbital electron populations 1.22748 0.80880 1.02970 0.99895 1.87911 1.19703 1.27453 1.95374 1.22496 0.91913 0.85100 1.00474 1.21649 0.93451 0.95993 0.96194 1.21765 1.01192 1.01024 0.95102 1.22868 0.95509 0.95657 1.01829 1.22311 0.97387 0.90172 0.92475 1.47576 1.28094 1.36006 1.26246 1.15437 0.80164 0.82171 0.80238 1.90960 1.70849 1.31687 1.50981 1.42316 1.25033 1.31299 1.33572 1.17106 0.88991 1.08817 0.88027 1.20954 1.00238 0.96888 0.90601 1.21235 0.93188 1.07408 1.00655 1.19138 0.89894 0.93565 0.87666 1.83564 1.36123 1.67224 1.25420 1.20779 0.94487 1.34362 0.96668 0.87589 1.24467 1.00241 0.95109 0.94314 1.69662 1.36812 1.36176 1.09207 0.86172 0.83522 0.79820 0.77300 1.19938 1.20874 1.18383 1.19958 0.99354 1.07704 0.92646 1.20318 0.90992 1.02360 0.98217 1.21732 0.85271 0.96424 0.94486 0.94169 0.93995 0.89478 0.92758 0.92886 0.92242 0.92384 0.91326 0.90129 0.89359 0.91176 0.90769 0.76871 0.85326 0.84612 0.91125 0.86095 0.86688 0.91388 0.91052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.27 9.94 -35.23 -0.35 -3.62 16 3 C 0.08 0.51 4.74 37.16 0.18 0.68 16 4 C -0.07 -0.51 0.72 -152.68 -0.11 -0.62 16 5 C -0.13 -0.88 8.28 37.16 0.31 -0.57 16 6 C -0.12 -0.63 6.04 -24.47 -0.15 -0.78 16 7 C 0.10 0.70 6.31 -2.41 -0.02 0.69 16 8 N -0.64 -7.41 3.32 -176.10 -0.59 -8.00 16 9 C 0.72 11.40 8.33 -86.92 -0.72 10.67 16 10 O -0.57 -11.68 14.11 5.28 0.07 -11.61 16 11 N -0.67 -9.74 5.30 -14.18 -0.08 -9.82 16 12 C 0.06 1.15 6.30 -83.62 -0.53 0.62 16 13 C -0.07 -1.39 8.69 -39.42 -0.34 -1.74 16 14 C -0.21 -4.76 9.16 -39.42 -0.36 -5.12 16 15 C 0.15 3.56 6.65 -39.09 -0.26 3.30 16 16 O -0.22 -5.87 8.58 -0.02 0.00 -5.87 16 17 C -0.39 -11.21 9.94 30.88 0.31 -10.90 16 18 H 0.11 3.16 5.43 -52.48 -0.28 2.87 16 19 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 20 N -0.88 -26.03 13.96 55.48 0.77 -25.25 16 21 Si 0.91 22.05 28.61 -169.99 -4.86 17.19 16 22 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 24 H -0.26 -6.30 7.11 56.52 0.40 -5.89 16 25 C -0.18 -3.52 9.99 -39.42 -0.39 -3.91 16 26 C -0.10 -1.68 9.96 -39.41 -0.39 -2.07 16 27 C 0.14 1.56 5.78 -3.06 -0.02 1.54 16 28 H 0.04 0.18 8.14 -51.93 -0.42 -0.25 16 29 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.40 7.42 -51.93 -0.39 0.02 16 34 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 35 H 0.07 0.54 7.85 -51.93 -0.41 0.13 16 36 H 0.08 0.41 8.05 -51.93 -0.42 -0.01 16 37 H 0.09 0.29 8.04 -51.93 -0.42 -0.13 16 38 H 0.07 0.44 7.69 -51.93 -0.40 0.04 16 39 H 0.07 0.43 7.22 -51.92 -0.38 0.06 16 40 H 0.40 4.18 7.27 -40.82 -0.30 3.89 16 41 H 0.13 2.75 6.22 -52.49 -0.33 2.42 16 42 H 0.14 3.31 5.63 -52.49 -0.30 3.02 16 43 H 0.28 7.60 8.31 -40.82 -0.34 7.26 16 44 H 0.12 2.19 8.06 -52.48 -0.42 1.77 16 45 H 0.12 1.53 8.06 -52.48 -0.42 1.10 16 46 H 0.07 0.82 7.82 -51.93 -0.41 0.42 16 47 H 0.07 0.89 7.85 -51.93 -0.41 0.48 16 LS Contribution 382.31 15.07 5.76 5.76 Total: -1.00 -34.50 382.31 -7.69 -42.19 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -6.94 Total: 4.26 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: -1.48 Total: -5.23 kcal Atomic # 7 Polarization: -43.18 SS G_CDS: 0.11 Total: -43.07 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: -0.28 Total: -21.10 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.86 Total: 17.19 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.50 -7.69 -42.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001475877777.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.558 kcal (2) G-P(sol) polarization free energy of solvation -34.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds