Wall clock time and date at job start Tue Mar 31 2020 20:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35995 * 117.00081 * 2 1 4 4 C 1.38558 * 120.07405 * 359.96402 * 3 2 1 5 5 C 1.38247 * 119.99917 * 180.02562 * 4 3 2 6 6 C 1.38255 * 120.14468 * 359.97438 * 5 4 3 7 7 C 1.38241 * 120.14765 * 0.02562 * 6 5 4 8 8 C 1.38563 * 119.99765 * 359.97368 * 7 6 5 9 9 O 1.35999 * 120.07024 * 180.02562 * 8 7 6 10 10 C 1.42897 * 116.99765 * 359.97438 * 9 8 7 11 11 C 1.50703 * 109.46980 * 179.97438 * 10 9 8 12 12 O 1.21280 * 119.99832 * 0.02562 * 11 10 9 13 13 N 1.34782 * 120.00113 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99647 * 180.02562 * 13 11 10 15 15 C 1.53000 * 110.89172 * 59.29939 * 14 13 11 16 16 C 1.55166 * 111.00021 * 183.18010 * 14 13 11 17 17 C 1.54426 * 102.89441 * 82.58968 * 16 14 13 18 18 N 1.47021 * 107.28119 * 22.18704 * 17 16 14 19 19 C 1.36941 * 125.65029 * 181.02246 * 18 17 16 20 20 H 1.08002 * 120.00093 * 180.02562 * 19 18 17 21 21 C 1.38815 * 119.99867 * 0.04459 * 19 18 17 22 22 N 1.31618 * 119.99926 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00226 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47058 * 89.99515 * 23 21 19 25 25 H 1.48494 * 109.47249 * 210.00073 * 23 21 19 26 26 H 1.48497 * 109.46813 * 330.00074 * 23 21 19 27 27 C 1.47432 * 108.70552 * 1.05979 * 18 17 16 28 28 H 1.09003 * 109.46964 * 299.99453 * 1 2 3 29 29 H 1.09001 * 109.47221 * 59.99407 * 1 2 3 30 30 H 1.09001 * 109.47520 * 179.97438 * 1 2 3 31 31 H 1.07996 * 120.00021 * 0.02562 * 4 3 2 32 32 H 1.07998 * 119.92703 * 180.27362 * 5 4 3 33 33 H 1.08004 * 119.92416 * 179.97438 * 6 5 4 34 34 H 1.07998 * 119.99949 * 179.97438 * 7 6 5 35 35 H 1.08996 * 109.47596 * 299.99815 * 10 9 8 36 36 H 1.09004 * 109.47087 * 60.00573 * 10 9 8 37 37 H 0.96998 * 119.99872 * 359.97438 * 13 11 10 38 38 H 1.09002 * 109.46961 * 60.69983 * 15 14 13 39 39 H 1.09002 * 109.46889 * 180.69852 * 15 14 13 40 40 H 1.09001 * 109.46598 * 300.69629 * 15 14 13 41 41 H 1.09000 * 110.71850 * 200.93384 * 16 14 13 42 42 H 1.09000 * 110.71893 * 324.20843 * 16 14 13 43 43 H 1.09000 * 109.87885 * 262.77045 * 17 16 14 44 44 H 1.08999 * 109.88096 * 141.60199 * 17 16 14 45 45 H 0.97003 * 120.00325 * 180.02562 * 22 21 19 46 46 H 1.08997 * 110.36384 * 217.03432 * 27 18 17 47 47 H 1.08994 * 110.36385 * 94.71081 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3748 -0.0008 5 6 1.9225 3.6057 -0.0013 6 6 3.3031 3.6797 -0.0005 7 6 4.0604 2.5232 0.0002 8 6 3.4359 1.2862 0.0008 9 8 4.1795 0.1475 0.0020 10 6 5.6002 0.3005 0.0022 11 6 6.2518 -1.0584 0.0043 12 8 5.5669 -2.0592 0.0051 13 7 7.5957 -1.1614 0.0053 14 6 8.2289 -2.4825 0.0067 15 6 7.8075 -3.2909 -1.2220 16 6 9.7735 -2.3586 0.0881 17 6 10.0251 -2.1723 1.6002 18 7 8.8564 -2.7155 2.3077 19 6 8.6782 -2.7241 3.6654 20 1 7.7805 -3.1490 4.0896 21 6 9.6514 -2.1864 4.4966 22 7 10.7455 -1.6687 3.9796 23 14 9.4081 -2.1974 6.3486 24 1 9.9702 -3.4501 6.9142 25 1 10.1029 -1.0290 6.9461 26 1 7.9576 -2.1220 6.6577 27 6 7.9084 -3.2504 1.3133 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 0.2147 2.3196 -0.0009 32 1 1.3344 4.5115 0.0026 33 1 3.7910 4.6433 -0.0014 34 1 5.1386 2.5838 0.0004 35 1 5.9067 0.8494 -0.8883 36 1 5.9063 0.8511 0.8918 37 1 8.1434 -0.3609 0.0043 38 1 8.1171 -2.7661 -2.1258 39 1 8.2812 -4.2721 -1.1912 40 1 6.7241 -3.4104 -1.2241 41 1 10.2529 -3.2683 -0.2735 42 1 10.1207 -1.4899 -0.4713 43 1 10.1375 -1.1126 1.8295 44 1 10.9228 -2.7150 1.8963 45 1 11.4257 -1.2932 4.5604 46 1 6.8821 -3.0566 1.6252 47 1 8.0680 -4.3196 1.1739 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500290358.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:12 Heat of formation + Delta-G solvation = -44.492866 kcal Electronic energy + Delta-G solvation = -29119.811646 eV Core-core repulsion = 25076.854467 eV Total energy + Delta-G solvation = -4042.957179 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.73393 -39.82702 -38.51778 -37.28619 -36.69060 -33.92471 -32.06012 -30.62459 -30.51180 -29.98558 -28.71148 -27.76493 -27.36243 -25.64348 -23.69200 -22.59704 -22.44849 -20.83139 -20.10707 -19.15603 -18.74400 -17.42320 -17.31790 -16.64543 -16.42484 -16.12571 -15.67198 -15.49820 -14.97141 -14.85476 -14.59877 -14.35971 -14.25000 -13.68469 -13.58835 -13.21562 -12.82791 -12.68628 -12.66453 -12.33173 -12.02062 -11.91320 -11.79796 -11.65190 -11.47501 -11.31868 -11.29053 -11.13410 -10.87508 -10.85881 -10.36811 -10.35013 -10.06312 -9.98479 -9.64087 -9.23261 -8.95216 -8.65715 -8.52860 -7.96323 -6.78361 -5.69259 -3.00935 1.08188 1.26307 2.65999 2.90117 3.13410 3.42142 3.47536 3.49614 3.54472 3.79420 4.52861 4.57540 4.66159 4.76010 4.88058 4.91398 4.97378 4.98908 5.07734 5.17574 5.19157 5.23282 5.32235 5.39640 5.44389 5.49258 5.62956 5.73737 5.96842 6.02206 6.05973 6.13700 6.17308 6.28390 6.36946 6.40433 6.46321 6.54915 6.69626 6.83061 6.91333 7.13258 7.44332 7.56078 7.57256 7.81280 7.86717 8.27827 8.54737 9.25662 9.85490 10.51433 11.42815 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011889 B = 0.002986 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2354.457107 B = 9376.165245 C =10281.013916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.301 6.301 3 C 0.101 3.899 4 C -0.175 4.175 5 C -0.122 4.122 6 C -0.116 4.116 7 C -0.176 4.176 8 C 0.105 3.895 9 O -0.276 6.276 10 C 0.039 3.961 11 C 0.519 3.481 12 O -0.515 6.515 13 N -0.698 5.698 14 C 0.159 3.841 15 C -0.151 4.151 16 C -0.146 4.146 17 C 0.177 3.823 18 N -0.603 5.603 19 C -0.221 4.221 20 H 0.076 0.924 21 C -0.010 4.010 22 N -0.925 5.925 23 Si 0.910 3.090 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.131 3.869 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.100 0.900 31 H 0.134 0.866 32 H 0.125 0.875 33 H 0.127 0.873 34 H 0.136 0.864 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.399 0.601 38 H 0.050 0.950 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.045 0.955 44 H 0.044 0.956 45 H 0.251 0.749 46 H 0.053 0.947 47 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.311 10.546 -13.227 22.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.214 6.214 3 C 0.055 3.945 4 C -0.194 4.194 5 C -0.140 4.140 6 C -0.135 4.135 7 C -0.194 4.194 8 C 0.059 3.941 9 O -0.188 6.188 10 C -0.040 4.040 11 C 0.303 3.697 12 O -0.389 6.389 13 N -0.351 5.351 14 C 0.073 3.927 15 C -0.210 4.210 16 C -0.185 4.185 17 C 0.053 3.947 18 N -0.330 5.330 19 C -0.349 4.349 20 H 0.094 0.906 21 C -0.206 4.206 22 N -0.574 5.574 23 Si 0.741 3.259 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.207 1.207 27 C 0.004 3.996 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.119 0.881 31 H 0.151 0.849 32 H 0.143 0.857 33 H 0.145 0.855 34 H 0.154 0.846 35 H 0.106 0.894 36 H 0.111 0.889 37 H 0.233 0.767 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.083 0.917 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.061 0.939 46 H 0.071 0.929 47 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -14.679 9.466 -13.019 21.785 hybrid contribution 0.226 0.865 1.117 1.431 sum -14.453 10.331 -11.902 21.384 Atomic orbital electron populations 1.23065 0.78764 1.04083 1.00922 1.86269 1.20815 1.25620 1.88725 1.18285 0.89124 0.85422 1.01673 1.21056 0.99886 0.91535 1.06881 1.20835 0.94602 0.96909 1.01643 1.20859 0.93728 0.97845 1.01044 1.21146 1.00666 0.91089 1.06538 1.18351 0.88432 0.86141 1.01178 1.86277 1.16606 1.27407 1.88495 1.22541 0.80490 0.97414 1.03512 1.19759 0.82706 0.89961 0.77267 1.90702 1.62801 1.37652 1.47793 1.45629 1.05254 1.09363 1.74815 1.21500 0.92864 0.82289 0.96060 1.22019 1.03474 0.99448 0.96062 1.23255 0.92702 1.01459 1.01071 1.21175 0.90551 0.98750 0.84265 1.44450 1.17529 1.69517 1.01460 1.19081 1.02884 1.32748 0.80203 0.90574 1.24754 0.96739 1.01089 0.97979 1.69945 1.09079 1.45319 1.33022 0.86132 0.77370 0.77117 0.85297 1.21642 1.21745 1.20741 1.21895 0.95056 0.94839 0.87798 0.92796 0.92878 0.88149 0.84859 0.85690 0.85529 0.84580 0.89413 0.88926 0.76741 0.93133 0.91791 0.90686 0.90783 0.91700 0.93649 0.93819 0.93902 0.92853 0.95600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.30 -4.21 10.28 -34.23 -0.35 -4.56 16 3 C 0.10 1.34 6.70 -39.12 -0.26 1.08 16 4 C -0.17 -1.77 9.04 -39.46 -0.36 -2.12 16 5 C -0.12 -1.10 10.04 -39.57 -0.40 -1.49 16 6 C -0.12 -1.09 10.04 -39.57 -0.40 -1.49 16 7 C -0.18 -1.94 9.04 -39.46 -0.36 -2.29 16 8 C 0.11 1.47 6.70 -39.12 -0.26 1.21 16 9 O -0.28 -4.51 9.45 -47.36 -0.45 -4.96 16 10 C 0.04 0.53 5.22 36.01 0.19 0.72 16 11 C 0.52 8.86 7.28 -10.98 -0.08 8.78 16 12 O -0.51 -10.79 13.31 -14.35 -0.19 -10.98 16 13 N -0.70 -11.19 5.18 -45.62 -0.24 -11.42 16 14 C 0.16 2.82 0.82 -129.67 -0.11 2.71 16 15 C -0.15 -2.35 8.57 37.16 0.32 -2.04 16 16 C -0.15 -2.55 5.99 -24.84 -0.15 -2.70 16 17 C 0.18 4.15 5.37 -3.01 -0.02 4.13 16 18 N -0.60 -15.51 3.39 -170.01 -0.58 -16.09 16 19 C -0.22 -6.29 10.28 -15.06 -0.15 -6.45 16 20 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 21 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 22 N -0.93 -26.92 10.31 55.49 0.57 -26.35 16 23 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 26 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 27 C 0.13 2.92 6.13 -2.52 -0.02 2.90 16 28 H 0.05 0.38 7.67 -51.93 -0.40 -0.01 16 29 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 30 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.13 1.00 6.30 -52.49 -0.33 0.67 16 32 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 33 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 34 H 0.14 1.22 6.30 -52.49 -0.33 0.89 16 35 H 0.09 0.87 7.66 -51.93 -0.40 0.47 16 36 H 0.09 1.13 7.66 -51.93 -0.40 0.73 16 37 H 0.40 5.38 8.50 -40.82 -0.35 5.03 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.93 8.13 -51.93 -0.42 0.51 16 40 H 0.07 1.30 6.23 -51.93 -0.32 0.97 16 41 H 0.07 1.21 8.04 -51.93 -0.42 0.80 16 42 H 0.06 0.96 8.07 -51.93 -0.42 0.54 16 43 H 0.05 1.15 7.38 -51.93 -0.38 0.77 16 44 H 0.04 1.14 7.51 -51.93 -0.39 0.75 16 45 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 46 H 0.05 1.30 6.58 -51.93 -0.34 0.96 16 47 H 0.03 0.58 8.03 -51.93 -0.42 0.16 16 LS Contribution 379.57 15.07 5.72 5.72 Total: -1.00 -35.66 379.57 -8.64 -44.30 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -6.95 Total: 3.07 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: -1.15 Total: 3.79 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: -0.24 Total: -53.85 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: -0.99 Total: -20.50 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.66 -8.64 -44.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500290358.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.191 kcal (2) G-P(sol) polarization free energy of solvation -35.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds