Wall clock time and date at job start Tue Mar 31 2020 20:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35994 * 116.99977 * 2 1 4 4 C 1.38566 * 120.07342 * 0.02562 * 3 2 1 5 5 C 1.38241 * 119.99737 * 179.97438 * 4 3 2 6 6 C 1.38243 * 120.15107 * 0.03225 * 5 4 3 7 7 C 1.38246 * 120.14442 * 359.67265 * 6 5 4 8 8 C 1.38564 * 119.99931 * 0.60042 * 7 6 5 9 9 O 1.35990 * 120.07583 * 179.69814 * 8 7 6 10 10 C 1.42898 * 116.99935 * 359.72589 * 9 8 7 11 11 C 1.50705 * 109.47396 * 179.97438 * 10 9 8 12 12 O 1.21279 * 119.99571 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00278 * 179.97438 * 11 10 9 14 14 C 1.46495 * 120.00030 * 180.02562 * 13 11 10 15 15 C 1.53006 * 110.78061 * 303.23840 * 14 13 11 16 16 C 1.55151 * 110.72020 * 180.02562 * 14 13 11 17 17 C 1.54914 * 101.58023 * 277.13513 * 16 14 13 18 18 N 1.47420 * 104.83159 * 322.99181 * 17 16 14 19 19 C 1.36945 * 125.64792 * 204.08975 * 18 17 16 20 20 H 1.07997 * 119.99756 * 180.02562 * 19 18 17 21 21 C 1.38805 * 119.99878 * 0.02562 * 19 18 17 22 22 N 1.31624 * 120.00257 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47187 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47141 * 300.00154 * 23 21 19 26 26 H 1.48498 * 109.47018 * 60.00200 * 23 21 19 27 27 C 1.47020 * 108.70626 * 24.35323 * 18 17 16 28 28 H 1.08998 * 109.47103 * 299.99841 * 1 2 3 29 29 H 1.08999 * 109.46815 * 59.99954 * 1 2 3 30 30 H 1.09004 * 109.46730 * 179.97438 * 1 2 3 31 31 H 1.08002 * 119.99772 * 359.96731 * 4 3 2 32 32 H 1.08004 * 119.92102 * 180.02562 * 5 4 3 33 33 H 1.08003 * 119.93262 * 179.97438 * 6 5 4 34 34 H 1.08006 * 120.00013 * 180.31928 * 7 6 5 35 35 H 1.09004 * 109.47625 * 60.00064 * 10 9 8 36 36 H 1.08998 * 109.47020 * 299.99702 * 10 9 8 37 37 H 0.97000 * 119.99444 * 0.02562 * 13 11 10 38 38 H 1.08995 * 109.47166 * 296.76593 * 15 14 13 39 39 H 1.09000 * 109.47069 * 56.76058 * 15 14 13 40 40 H 1.08991 * 109.47197 * 176.76236 * 15 14 13 41 41 H 1.09002 * 111.00697 * 159.06407 * 16 14 13 42 42 H 1.08994 * 111.00548 * 35.20875 * 16 14 13 43 43 H 1.08999 * 110.37083 * 204.15142 * 17 16 14 44 44 H 1.08998 * 110.45606 * 81.87777 * 17 16 14 45 45 H 0.97001 * 119.99885 * 179.97438 * 22 21 19 46 46 H 1.09001 * 109.88406 * 118.12749 * 27 18 17 47 47 H 1.09001 * 109.88743 * 239.29401 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3748 0.0005 5 6 1.9225 3.6057 0.0011 6 6 3.3029 3.6799 0.0004 7 6 4.0603 2.5233 0.0060 8 6 3.4360 1.2863 -0.0002 9 8 4.1795 0.1477 -0.0009 10 6 5.6003 0.3007 -0.0011 11 6 6.2519 -1.0582 -0.0012 12 8 5.5670 -2.0591 -0.0017 13 7 7.5958 -1.1612 -0.0019 14 6 8.2292 -2.4822 -0.0026 15 6 7.7574 -3.3110 1.1939 16 6 9.7750 -2.3497 -0.0026 17 6 10.0686 -2.1346 -1.5084 18 7 9.0996 -2.9970 -2.2088 19 6 9.2492 -3.5031 -3.4725 20 1 8.4781 -4.1277 -3.8987 21 6 10.3918 -3.2133 -4.2054 22 7 11.3317 -2.4524 -3.6857 23 14 10.5961 -3.9042 -5.9289 24 1 11.8923 -3.4503 -6.4937 25 1 10.5722 -5.3879 -5.8734 26 1 9.4860 -3.4231 -6.7899 27 6 7.9431 -3.2185 -1.3285 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2146 2.3196 0.0004 32 1 1.3342 4.5115 0.0019 33 1 3.7908 4.6434 0.0004 34 1 5.1386 2.5840 0.0107 35 1 5.9068 0.8500 0.8891 36 1 5.9064 0.8508 -0.8908 37 1 8.1435 -0.3606 -0.0019 38 1 8.0694 -2.8250 2.1182 39 1 6.6705 -3.3911 1.1745 40 1 8.1961 -4.3074 1.1412 41 1 10.2455 -3.2635 0.3605 42 1 10.0933 -1.4883 0.5844 43 1 11.0880 -2.4405 -1.7437 44 1 9.9141 -1.0907 -1.7813 45 1 12.1303 -2.2502 -4.1978 46 1 7.0422 -2.8159 -1.7915 47 1 7.8202 -4.2849 -1.1391 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500290359.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:16 Heat of formation + Delta-G solvation = -42.322254 kcal Electronic energy + Delta-G solvation = -28896.048931 eV Core-core repulsion = 24853.185878 eV Total energy + Delta-G solvation = -4042.863054 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.78935 -39.90464 -38.56770 -37.32946 -36.74470 -34.00169 -32.08005 -30.66806 -30.55794 -29.99020 -28.70880 -27.81794 -27.40200 -25.66281 -23.68913 -22.62724 -22.49590 -20.79097 -20.26940 -19.16953 -18.78418 -17.46389 -17.34804 -16.71444 -16.48674 -16.21240 -15.71981 -15.55066 -15.02442 -14.90209 -14.64163 -14.39651 -14.24723 -13.68830 -13.60199 -13.09228 -12.90429 -12.72741 -12.67240 -12.37348 -12.24349 -11.96155 -11.73458 -11.55980 -11.51699 -11.35937 -11.33391 -11.19832 -10.93087 -10.82904 -10.41028 -10.33139 -10.10754 -9.93498 -9.64435 -9.23997 -8.99998 -8.68496 -8.61963 -8.01245 -6.80478 -5.64205 -3.04523 1.03380 1.21618 2.59563 2.81394 3.09283 3.42827 3.46478 3.48222 3.49736 3.72536 4.50357 4.53278 4.60961 4.71085 4.83295 4.86400 4.94049 4.94071 5.00504 5.13033 5.17407 5.20504 5.29202 5.39236 5.40388 5.50446 5.57694 5.74405 5.92154 6.01340 6.04755 6.17789 6.22639 6.23826 6.36224 6.41588 6.45873 6.52912 6.71416 6.81417 6.87453 7.12883 7.39430 7.44419 7.64260 7.76600 7.85020 8.36116 8.47196 9.24443 9.84997 10.49636 11.40157 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014537 B = 0.002556 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.687477 B =10953.700035 C =11344.667752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.301 6.301 3 C 0.101 3.899 4 C -0.175 4.175 5 C -0.121 4.121 6 C -0.117 4.117 7 C -0.176 4.176 8 C 0.104 3.896 9 O -0.276 6.276 10 C 0.039 3.961 11 C 0.517 3.483 12 O -0.511 6.511 13 N -0.705 5.705 14 C 0.162 3.838 15 C -0.153 4.153 16 C -0.146 4.146 17 C 0.152 3.848 18 N -0.604 5.604 19 C -0.218 4.218 20 H 0.076 0.924 21 C -0.013 4.013 22 N -0.926 5.926 23 Si 0.915 3.085 24 H -0.290 1.290 25 H -0.285 1.285 26 H -0.286 1.286 27 C 0.136 3.864 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.100 0.900 31 H 0.134 0.866 32 H 0.125 0.875 33 H 0.127 0.873 34 H 0.136 0.864 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.398 0.602 38 H 0.049 0.951 39 H 0.077 0.923 40 H 0.064 0.936 41 H 0.077 0.923 42 H 0.063 0.937 43 H 0.108 0.892 44 H 0.010 0.990 45 H 0.252 0.748 46 H 0.031 0.969 47 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.859 13.025 12.265 23.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.214 6.214 3 C 0.056 3.944 4 C -0.194 4.194 5 C -0.139 4.139 6 C -0.135 4.135 7 C -0.195 4.195 8 C 0.058 3.942 9 O -0.188 6.188 10 C -0.040 4.040 11 C 0.301 3.699 12 O -0.386 6.386 13 N -0.358 5.358 14 C 0.076 3.924 15 C -0.211 4.211 16 C -0.185 4.185 17 C 0.027 3.973 18 N -0.330 5.330 19 C -0.346 4.346 20 H 0.094 0.906 21 C -0.208 4.208 22 N -0.575 5.575 23 Si 0.745 3.255 24 H -0.216 1.216 25 H -0.212 1.212 26 H -0.213 1.213 27 C 0.010 3.990 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.119 0.881 31 H 0.152 0.848 32 H 0.143 0.857 33 H 0.145 0.855 34 H 0.154 0.846 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.232 0.768 38 H 0.069 0.931 39 H 0.095 0.905 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.082 0.918 43 H 0.126 0.874 44 H 0.028 0.972 45 H 0.062 0.938 46 H 0.049 0.951 47 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -16.193 11.863 12.077 23.427 hybrid contribution 0.273 0.587 -0.998 1.190 sum -15.921 12.451 11.080 23.049 Atomic orbital electron populations 1.23072 0.78710 1.04121 1.00942 1.86271 1.20860 1.25604 1.88704 1.18290 0.89118 0.85439 1.01602 1.21066 0.99919 0.91530 1.06837 1.20839 0.94608 0.96929 1.01546 1.20859 0.93733 0.97846 1.01053 1.21143 1.00638 0.91089 1.06593 1.18349 0.88434 0.86115 1.01302 1.86279 1.16542 1.27439 1.88537 1.22546 0.80584 0.97322 1.03529 1.19808 0.82735 0.90023 0.77383 1.90712 1.62779 1.37615 1.47490 1.45825 1.05297 1.09582 1.75073 1.21378 0.93329 0.81709 0.95944 1.22079 1.03561 0.99418 0.96087 1.23360 0.92055 1.01528 1.01533 1.21943 0.98001 0.92885 0.84445 1.44504 1.16762 1.57869 1.13872 1.19060 1.02437 1.24049 0.89057 0.90582 1.24755 0.96940 1.00259 0.98818 1.69763 1.09520 1.41692 1.36523 0.86141 0.76907 0.78551 0.83870 1.21602 1.21151 1.21274 1.21621 0.91612 0.96793 0.89013 0.92842 0.92787 0.88118 0.84827 0.85660 0.85509 0.84597 0.89308 0.89008 0.76763 0.93148 0.90461 0.91682 0.90411 0.91825 0.87399 0.97198 0.93767 0.95118 0.95064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.30 -4.07 10.28 -34.22 -0.35 -4.43 16 3 C 0.10 1.29 6.70 -39.12 -0.26 1.03 16 4 C -0.17 -1.68 9.04 -39.46 -0.36 -2.04 16 5 C -0.12 -1.03 10.04 -39.58 -0.40 -1.43 16 6 C -0.12 -1.03 10.04 -39.58 -0.40 -1.42 16 7 C -0.18 -1.82 9.04 -39.46 -0.36 -2.18 16 8 C 0.10 1.39 6.70 -39.12 -0.26 1.13 16 9 O -0.28 -4.33 9.45 -47.34 -0.45 -4.78 16 10 C 0.04 0.50 5.22 36.01 0.19 0.68 16 11 C 0.52 8.49 7.12 -10.98 -0.08 8.41 16 12 O -0.51 -10.51 13.48 -14.35 -0.19 -10.71 16 13 N -0.70 -10.92 5.14 -45.91 -0.24 -11.15 16 14 C 0.16 2.90 0.81 -129.98 -0.11 2.79 16 15 C -0.15 -2.47 8.44 37.16 0.31 -2.15 16 16 C -0.15 -2.60 6.07 -24.58 -0.15 -2.75 16 17 C 0.15 3.57 5.87 -2.53 -0.01 3.55 16 18 N -0.60 -15.71 3.39 -170.07 -0.58 -16.28 16 19 C -0.22 -6.21 10.27 -15.06 -0.15 -6.37 16 20 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 21 C -0.01 -0.36 5.49 -17.43 -0.10 -0.46 16 22 N -0.93 -26.78 10.09 55.49 0.56 -26.22 16 23 Si 0.91 22.40 29.55 -169.99 -5.02 17.38 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 27 C 0.14 3.09 6.19 -3.06 -0.02 3.07 16 28 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 29 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 30 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.13 0.94 6.30 -52.49 -0.33 0.61 16 32 H 0.13 0.74 8.06 -52.48 -0.42 0.31 16 33 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 34 H 0.14 1.11 6.30 -52.48 -0.33 0.78 16 35 H 0.09 0.82 7.65 -51.93 -0.40 0.42 16 36 H 0.09 1.00 7.68 -51.93 -0.40 0.60 16 37 H 0.40 5.03 8.49 -40.82 -0.35 4.68 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.08 1.37 5.97 -51.93 -0.31 1.06 16 40 H 0.06 1.01 8.07 -51.93 -0.42 0.59 16 41 H 0.08 1.38 8.05 -51.93 -0.42 0.96 16 42 H 0.06 0.94 8.07 -51.93 -0.42 0.52 16 43 H 0.11 2.86 5.87 -51.93 -0.30 2.56 16 44 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 45 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 46 H 0.03 0.76 6.90 -51.93 -0.36 0.40 16 47 H 0.03 0.72 7.77 -51.93 -0.40 0.32 16 LS Contribution 378.67 15.07 5.71 5.71 Total: -1.00 -35.59 378.67 -8.61 -44.20 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -6.89 Total: 3.19 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: -1.16 Total: 3.08 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: -0.25 Total: -53.66 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -0.99 Total: -19.91 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.59 -8.61 -44.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500290359.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.882 kcal (2) G-P(sol) polarization free energy of solvation -35.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds