Wall clock time and date at job start Tue Mar 31 2020 20:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35994 * 116.99977 * 2 1 4 4 C 1.38566 * 120.07342 * 0.02562 * 3 2 1 5 5 C 1.38241 * 119.99737 * 179.97438 * 4 3 2 6 6 C 1.38243 * 120.15107 * 0.03225 * 5 4 3 7 7 C 1.38246 * 120.14442 * 359.67265 * 6 5 4 8 8 C 1.38564 * 119.99931 * 0.60042 * 7 6 5 9 9 O 1.35990 * 120.07583 * 179.69814 * 8 7 6 10 10 C 1.42898 * 116.99935 * 359.72589 * 9 8 7 11 11 C 1.50705 * 109.47396 * 179.97438 * 10 9 8 12 12 O 1.21279 * 119.99571 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00278 * 179.97438 * 11 10 9 14 14 C 1.46495 * 120.00030 * 180.02562 * 13 11 10 15 15 C 1.53006 * 110.78061 * 303.23840 * 14 13 11 16 16 C 1.55151 * 110.72020 * 180.02562 * 14 13 11 17 17 C 1.54914 * 101.58023 * 277.13513 * 16 14 13 18 18 N 1.47420 * 104.83159 * 322.99181 * 17 16 14 19 19 C 1.36945 * 125.64792 * 204.08975 * 18 17 16 20 20 H 1.07997 * 119.99756 * 180.02562 * 19 18 17 21 21 C 1.38805 * 119.99878 * 0.02562 * 19 18 17 22 22 N 1.31624 * 120.00257 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47187 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47141 * 300.00154 * 23 21 19 26 26 H 1.48498 * 109.47018 * 60.00200 * 23 21 19 27 27 C 1.47020 * 108.70626 * 24.35323 * 18 17 16 28 28 H 1.08998 * 109.47103 * 299.99841 * 1 2 3 29 29 H 1.08999 * 109.46815 * 59.99954 * 1 2 3 30 30 H 1.09004 * 109.46730 * 179.97438 * 1 2 3 31 31 H 1.08002 * 119.99772 * 359.96731 * 4 3 2 32 32 H 1.08004 * 119.92102 * 180.02562 * 5 4 3 33 33 H 1.08003 * 119.93262 * 179.97438 * 6 5 4 34 34 H 1.08006 * 120.00013 * 180.31928 * 7 6 5 35 35 H 1.09004 * 109.47625 * 60.00064 * 10 9 8 36 36 H 1.08998 * 109.47020 * 299.99702 * 10 9 8 37 37 H 0.97000 * 119.99444 * 0.02562 * 13 11 10 38 38 H 1.08995 * 109.47166 * 296.76593 * 15 14 13 39 39 H 1.09000 * 109.47069 * 56.76058 * 15 14 13 40 40 H 1.08991 * 109.47197 * 176.76236 * 15 14 13 41 41 H 1.09002 * 111.00697 * 159.06407 * 16 14 13 42 42 H 1.08994 * 111.00548 * 35.20875 * 16 14 13 43 43 H 1.08999 * 110.37083 * 204.15142 * 17 16 14 44 44 H 1.08998 * 110.45606 * 81.87777 * 17 16 14 45 45 H 0.97001 * 119.99885 * 179.97438 * 22 21 19 46 46 H 1.09001 * 109.88406 * 118.12749 * 27 18 17 47 47 H 1.09001 * 109.88743 * 239.29401 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3748 0.0005 5 6 1.9225 3.6057 0.0011 6 6 3.3029 3.6799 0.0004 7 6 4.0603 2.5233 0.0060 8 6 3.4360 1.2863 -0.0002 9 8 4.1795 0.1477 -0.0009 10 6 5.6003 0.3007 -0.0011 11 6 6.2519 -1.0582 -0.0012 12 8 5.5670 -2.0591 -0.0017 13 7 7.5958 -1.1612 -0.0019 14 6 8.2292 -2.4822 -0.0026 15 6 7.7574 -3.3110 1.1939 16 6 9.7750 -2.3497 -0.0026 17 6 10.0686 -2.1346 -1.5084 18 7 9.0996 -2.9970 -2.2088 19 6 9.2492 -3.5031 -3.4725 20 1 8.4781 -4.1277 -3.8987 21 6 10.3918 -3.2133 -4.2054 22 7 11.3317 -2.4524 -3.6857 23 14 10.5961 -3.9042 -5.9289 24 1 11.8923 -3.4503 -6.4937 25 1 10.5722 -5.3879 -5.8734 26 1 9.4860 -3.4231 -6.7899 27 6 7.9431 -3.2185 -1.3285 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2146 2.3196 0.0004 32 1 1.3342 4.5115 0.0019 33 1 3.7908 4.6434 0.0004 34 1 5.1386 2.5840 0.0107 35 1 5.9068 0.8500 0.8891 36 1 5.9064 0.8508 -0.8908 37 1 8.1435 -0.3606 -0.0019 38 1 8.0694 -2.8250 2.1182 39 1 6.6705 -3.3911 1.1745 40 1 8.1961 -4.3074 1.1412 41 1 10.2455 -3.2635 0.3605 42 1 10.0933 -1.4883 0.5844 43 1 11.0880 -2.4405 -1.7437 44 1 9.9141 -1.0907 -1.7813 45 1 12.1303 -2.2502 -4.1978 46 1 7.0422 -2.8159 -1.7915 47 1 7.8202 -4.2849 -1.1391 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500290359.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:15 Heat of formation + Delta-G solvation = -66.261221 kcal Electronic energy + Delta-G solvation = -28897.087003 eV Core-core repulsion = 24853.185878 eV Total energy + Delta-G solvation = -4043.901125 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.71750 -41.14681 -39.61428 -38.68631 -37.68755 -35.74217 -33.78243 -32.06533 -31.28971 -31.15079 -30.38920 -28.84128 -28.07403 -27.56466 -25.42906 -23.55242 -23.25534 -22.31468 -21.81537 -20.54747 -19.71907 -19.04886 -18.26968 -18.16599 -17.45434 -17.23224 -17.04481 -16.68098 -16.56525 -15.79302 -15.68282 -15.64946 -15.42034 -15.38179 -14.84657 -14.37659 -14.32438 -14.06195 -13.70623 -13.58743 -13.45749 -13.31406 -13.12677 -12.99859 -12.84141 -12.76751 -12.28901 -12.14831 -12.09082 -12.04708 -12.02039 -11.98551 -11.97925 -11.69604 -11.54190 -10.75643 -10.64204 -10.08949 -9.72769 -8.89896 -8.83408 -7.79824 -5.23368 0.30911 0.45899 1.44447 1.47151 1.50375 1.53931 1.60214 2.39822 2.47424 2.65813 2.76852 3.29028 3.50634 3.69608 3.70889 3.89172 3.96018 4.00202 4.05313 4.10024 4.14092 4.18077 4.31293 4.38007 4.44218 4.50640 4.62545 4.67028 4.70573 4.74846 4.79020 4.84669 4.89603 5.00526 5.09295 5.21659 5.33020 5.35003 5.41470 5.54313 5.59507 5.65958 5.76697 5.80166 6.05048 6.30899 6.53690 6.64169 7.10459 7.23594 7.75938 8.39252 9.21162 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014537 B = 0.002556 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.687477 B =10953.700035 C =11344.667752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.342 6.342 3 C 0.071 3.929 4 C -0.174 4.174 5 C -0.117 4.117 6 C -0.117 4.117 7 C -0.176 4.176 8 C 0.066 3.934 9 O -0.315 6.315 10 C 0.045 3.955 11 C 0.511 3.489 12 O -0.560 6.560 13 N -0.696 5.696 14 C 0.172 3.828 15 C -0.144 4.144 16 C -0.125 4.125 17 C 0.154 3.846 18 N -0.623 5.623 19 C -0.246 4.246 20 H 0.067 0.933 21 C -0.058 4.058 22 N -0.942 5.942 23 Si 0.978 3.022 24 H -0.286 1.286 25 H -0.279 1.279 26 H -0.283 1.283 27 C 0.136 3.864 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.107 0.893 31 H 0.156 0.844 32 H 0.158 0.842 33 H 0.157 0.843 34 H 0.156 0.844 35 H 0.129 0.871 36 H 0.109 0.891 37 H 0.415 0.585 38 H 0.081 0.919 39 H 0.057 0.943 40 H 0.067 0.933 41 H 0.083 0.917 42 H 0.106 0.894 43 H 0.077 0.923 44 H -0.003 1.003 45 H 0.250 0.750 46 H 0.002 0.998 47 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.001 15.587 13.381 26.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.256 6.256 3 C 0.026 3.974 4 C -0.193 4.193 5 C -0.135 4.135 6 C -0.135 4.135 7 C -0.195 4.195 8 C 0.021 3.979 9 O -0.229 6.229 10 C -0.033 4.033 11 C 0.298 3.702 12 O -0.438 6.438 13 N -0.350 5.350 14 C 0.086 3.914 15 C -0.202 4.202 16 C -0.164 4.164 17 C 0.029 3.971 18 N -0.349 5.349 19 C -0.375 4.375 20 H 0.085 0.915 21 C -0.251 4.251 22 N -0.591 5.591 23 Si 0.806 3.194 24 H -0.212 1.212 25 H -0.205 1.205 26 H -0.210 1.210 27 C 0.009 3.991 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.125 0.875 31 H 0.174 0.826 32 H 0.175 0.825 33 H 0.175 0.825 34 H 0.174 0.826 35 H 0.146 0.854 36 H 0.127 0.873 37 H 0.252 0.748 38 H 0.100 0.900 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.102 0.898 42 H 0.125 0.875 43 H 0.095 0.905 44 H 0.015 0.985 45 H 0.059 0.941 46 H 0.020 0.980 47 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -16.332 14.466 13.214 25.507 hybrid contribution 0.234 -0.154 -1.381 1.409 sum -16.098 14.313 11.833 24.577 Atomic orbital electron populations 1.23315 0.76646 1.05149 1.02399 1.86202 1.23315 1.26902 1.89209 1.18739 0.89535 0.86124 1.03041 1.21392 1.01020 0.91001 1.05887 1.21303 0.95021 0.97557 0.99611 1.21293 0.94043 0.98526 0.99687 1.21447 1.01861 0.90446 1.05726 1.18781 0.88823 0.86457 1.03819 1.86203 1.17695 1.29488 1.89493 1.22593 0.79714 0.94877 1.06132 1.20535 0.82661 0.91114 0.75938 1.90692 1.63843 1.39657 1.49623 1.45689 1.05417 1.09344 1.74505 1.21168 0.93632 0.82722 0.93905 1.21993 1.02254 0.99628 0.96354 1.23211 0.91640 1.03723 0.97784 1.21793 0.95817 0.91478 0.87986 1.44781 1.18331 1.58032 1.13758 1.19319 1.02691 1.24694 0.90765 0.91514 1.25527 0.96587 1.00679 1.02349 1.69992 1.09540 1.42143 1.37462 0.85172 0.76758 0.78049 0.79450 1.21155 1.20483 1.20979 1.21685 0.89613 0.96752 0.91021 0.91082 0.91473 0.87478 0.82616 0.82487 0.82523 0.82638 0.85359 0.87298 0.74785 0.90024 0.92381 0.91383 0.89807 0.87524 0.90515 0.98490 0.94060 0.97989 0.96237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 113.37 1.11 1.42 16 2 O -0.34 -9.66 10.28 -79.61 -0.82 -10.48 16 3 C 0.07 1.82 6.70 22.57 0.15 1.97 16 4 C -0.17 -3.07 9.04 22.35 0.20 -2.87 16 5 C -0.12 -1.63 10.04 22.27 0.22 -1.40 16 6 C -0.12 -1.69 10.04 22.27 0.22 -1.47 16 7 C -0.18 -3.31 9.04 22.35 0.20 -3.11 16 8 C 0.07 1.77 6.70 22.57 0.15 1.92 16 9 O -0.32 -10.15 9.45 -67.03 -0.63 -10.78 16 10 C 0.04 1.10 5.22 71.24 0.37 1.47 16 11 C 0.51 16.81 7.12 87.66 0.62 17.44 16 12 O -0.56 -23.96 13.48 16.01 0.22 -23.74 16 13 N -0.70 -20.75 5.14 -417.55 -2.15 -22.90 16 14 C 0.17 6.04 0.81 4.80 0.00 6.04 16 15 C -0.14 -4.47 8.44 71.98 0.61 -3.86 16 16 C -0.13 -4.23 6.07 31.99 0.19 -4.03 16 17 C 0.15 7.24 5.87 86.86 0.51 7.75 16 18 N -0.62 -33.31 3.39 -691.97 -2.35 -35.66 16 19 C -0.25 -14.46 10.27 84.03 0.86 -13.60 16 20 H 0.07 3.92 7.83 -2.91 -0.02 3.89 16 21 C -0.06 -3.36 5.49 84.86 0.47 -2.89 16 22 N -0.94 -55.27 10.09 21.65 0.22 -55.05 16 23 Si 0.98 46.60 29.55 68.60 2.03 48.63 16 24 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 25 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 26 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 27 C 0.14 6.36 6.19 86.73 0.54 6.90 16 28 H 0.07 0.86 7.66 -2.39 -0.02 0.84 16 29 H 0.07 0.87 7.66 -2.39 -0.02 0.85 16 30 H 0.11 1.50 8.14 -2.38 -0.02 1.48 16 31 H 0.16 1.86 6.30 -2.91 -0.02 1.84 16 32 H 0.16 1.15 8.06 -2.91 -0.02 1.13 16 33 H 0.16 1.28 8.06 -2.91 -0.02 1.26 16 34 H 0.16 2.10 6.30 -2.91 -0.02 2.08 16 35 H 0.13 2.04 7.65 -2.39 -0.02 2.03 16 36 H 0.11 2.24 7.68 -2.39 -0.02 2.22 16 37 H 0.41 9.50 8.49 -92.71 -0.79 8.72 16 38 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.06 2.07 5.97 -2.39 -0.01 2.05 16 40 H 0.07 2.05 8.07 -2.39 -0.02 2.03 16 41 H 0.08 2.78 8.05 -2.39 -0.02 2.76 16 42 H 0.11 2.73 8.07 -2.39 -0.02 2.71 16 43 H 0.08 4.13 5.87 -2.39 -0.01 4.12 16 44 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 45 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 46 H 0.00 0.11 6.90 -2.39 -0.02 0.09 16 47 H 0.02 0.95 7.77 -2.39 -0.02 0.93 16 Total: -1.00 -82.65 378.67 3.16 -79.49 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: 0.20 Total: 18.81 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: 6.44 Total: 11.68 kcal Atomic # 7 Polarization: -109.33 SS G_CDS: -4.28 Total: -113.61 kcal Atomic # 8 Polarization: -43.77 SS G_CDS: -1.24 Total: -45.00 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Total: -82.65 3.16 -79.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500290359.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.228 kcal (2) G-P(sol) polarization free energy of solvation -82.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds